RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 FXR2P51116 673 aaKnown RBP eCLIP6.25□□□□□ -1.41
TDP1-217ENST00000557782 MDM2Q00987 491 aaPredicted RBP6.25□□□□□ -1.41
TDP1-217ENST00000557782 UPF1Q92900 1129 aaKnown RBP eCLIP6.25□□□□□ -1.41
TDP1-217ENST00000557782 FBXW7Q969H0 707 aa6.25□□□□□ -1.41
TDP1-217ENST00000557782 BEGAINQ9BUH8 593 aa6.25□□□□□ -1.41
TDP1-217ENST00000557782 C2orf72A6NCS6 295 aa6.24□□□□□ -1.41
TDP1-217ENST00000557782 TIE1P35590 1138 aa6.24□□□□□ -1.41
TDP1-217ENST00000557782 PROCA1Q8NCQ7 364 aaPredicted RBP6.24□□□□□ -1.41
TDP1-217ENST00000557782 G3V3G9 751 aa6.23□□□□□ -1.41
TDP1-217ENST00000557782 CD44P16070 742 aaKnown RBP6.23□□□□□ -1.41
TDP1-217ENST00000557782 IRF5Q13568 498 aa6.23□□□□□ -1.41
TDP1-217ENST00000557782 POLR3EQ9NVU0 708 aa6.23□□□□□ -1.41
TDP1-217ENST00000557782 RBM25P49756 843 aaKnown RBP6.22□□□□□ -1.41
TDP1-217ENST00000557782 CLK2P49760 499 aaKnown RBP6.22□□□□□ -1.41
TDP1-217ENST00000557782 MS4A3Q96HJ5 214 aa6.22□□□□□ -1.41
TDP1-217ENST00000557782 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.22□□□□□ -1.41
TDP1-217ENST00000557782 PRM3Q9NNZ6 103 aa6.22□□□□□ -1.41
TDP1-217ENST00000557782 TRPC6Q9Y210 931 aa6.22□□□□□ -1.41
TDP1-217ENST00000557782 KIF3CO14782 793 aa6.21□□□□□ -1.42
TDP1-217ENST00000557782 RFC5P40937 340 aa6.21□□□□□ -1.42
TDP1-217ENST00000557782 DIXDC1Q155Q3 683 aa6.21□□□□□ -1.42
TDP1-217ENST00000557782 TMEM259Q4ZIN3 620 aa6.21□□□□□ -1.42
TDP1-217ENST00000557782 CALR3Q96L12 384 aaKnown RBP6.21□□□□□ -1.42
TDP1-217ENST00000557782 TTLL13PA6NNM8 815 aa6.2□□□□□ -1.42
TDP1-217ENST00000557782 FOXD4L5Q5VV16 416 aaPredicted RBP6.2□□□□□ -1.42
TDP1-217ENST00000557782 MYSM1Q5VVJ2 828 aa6.2□□□□□ -1.42
TDP1-217ENST00000557782 DPY19L2Q6NUT2 758 aa6.2□□□□□ -1.42
TDP1-217ENST00000557782 FOXD4L4Q8WXT5 416 aaPredicted RBP6.2□□□□□ -1.42
TDP1-217ENST00000557782 FAM217BQ9NTX9 383 aaPredicted RBP6.2□□□□□ -1.42
TDP1-217ENST00000557782 EVI5O60447 810 aa6.19□□□□□ -1.42
TDP1-217ENST00000557782 PRIM1P49642 420 aaKnown RBP6.19□□□□□ -1.42
TDP1-217ENST00000557782 KCNA1Q09470 495 aa6.19□□□□□ -1.42
TDP1-217ENST00000557782 SNRKQ9NRH2 765 aa6.19□□□□□ -1.42
TDP1-217ENST00000557782 TRIM35Q9UPQ4 493 aa6.18□□□□□ -1.42
TDP1-217ENST00000557782 SHROOM4Q9ULL8 1493 aa6.17□□□□□ -1.42
TDP1-217ENST00000557782 E9PSI1 815 aa6.17□□□□□ -1.42
TDP1-217ENST00000557782 BRD1O95696 1058 aa6.17□□□□□ -1.42
TDP1-217ENST00000557782 EN1Q05925 392 aaPredicted RBP6.17□□□□□ -1.42
TDP1-217ENST00000557782 EPAS1Q99814 870 aa6.17□□□□□ -1.42
TDP1-217ENST00000557782 CDHR5Q9HBB8 845 aa6.17□□□□□ -1.42
TDP1-217ENST00000557782 GDPD2Q9HCC8 539 aa6.17□□□□□ -1.42
TDP1-217ENST00000557782 USTQ9Y2C2 406 aa6.17□□□□□ -1.42
TDP1-217ENST00000557782 BOLA1Q9Y3E2 137 aa6.17□□□□□ -1.42
TDP1-217ENST00000557782 MAP3K7O43318 606 aa6.16□□□□□ -1.42
TDP1-217ENST00000557782 OATP04181 439 aa6.16□□□□□ -1.42
TDP1-217ENST00000557782 ABL2P42684 1182 aa6.16□□□□□ -1.42
TDP1-217ENST00000557782 PPP2R2DQ66LE6 453 aa6.16□□□□□ -1.42
TDP1-217ENST00000557782 GLMNQ92990 594 aa6.16□□□□□ -1.42
TDP1-217ENST00000557782 PHOX2BQ99453 314 aa6.16□□□□□ -1.42
TDP1-217ENST00000557782 TMEM121BQ9BXQ6 578 aaPredicted RBP6.16□□□□□ -1.42
TDP1-217ENST00000557782 NPDC1Q9NQX5 325 aaPredicted RBP6.16□□□□□ -1.42
TDP1-217ENST00000557782 SOCS7O14512 581 aa6.15□□□□□ -1.42
TDP1-217ENST00000557782 CSB-PGBD3P0DP91 1061 aa6.15□□□□□ -1.42
TDP1-217ENST00000557782 PBXIP1Q96AQ6 731 aa6.15□□□□□ -1.42
TDP1-217ENST00000557782 TBC1D2Q9BYX2 928 aa6.15□□□□□ -1.42
TDP1-217ENST00000557782 METTL3Q86U44 580 aaKnown RBP6.14□□□□□ -1.43
TDP1-217ENST00000557782 PDCD7Q8N8D1 485 aaKnown RBP6.14□□□□□ -1.43
TDP1-217ENST00000557782 MTMR14Q8NCE2 650 aa6.14□□□□□ -1.43
TDP1-217ENST00000557782 BMP2KQ9NSY1 1161 aaPredicted RBP6.14□□□□□ -1.43
TDP1-217ENST00000557782 PHF14O94880 888 aa6.13□□□□□ -1.43
TDP1-217ENST00000557782 ZNF428Q96B54 188 aa6.13□□□□□ -1.43
TDP1-217ENST00000557782 LOC105371045A0A1W2PR82 267 aa6.12□□□□□ -1.43
TDP1-217ENST00000557782 IGSF3O75054 1194 aa6.12□□□□□ -1.43
TDP1-217ENST00000557782 PIP4P2Q8N4L2 257 aa6.12□□□□□ -1.43
TDP1-217ENST00000557782 MYT1LQ9UL68 1186 aa6.12□□□□□ -1.43
TDP1-217ENST00000557782 AMOTL2Q9Y2J4 779 aa6.12□□□□□ -1.43
TDP1-217ENST00000557782 POM121CA8CG34 1229 aa6.11□□□□□ -1.43
TDP1-217ENST00000557782 CCDC27Q2M243 656 aa6.11□□□□□ -1.43
TDP1-217ENST00000557782 TUSC1Q2TAM9 212 aa6.11□□□□□ -1.43
TDP1-217ENST00000557782 RIC3Q7Z5B4 369 aa6.11□□□□□ -1.43
TDP1-217ENST00000557782 PXYLP1Q8TE99 480 aa6.11□□□□□ -1.43
TDP1-217ENST00000557782 RBM33Q96EV2 1170 aaKnown RBP6.11□□□□□ -1.43
TDP1-217ENST00000557782 ANO8Q9HCE9 1232 aaPredicted RBP6.11□□□□□ -1.43
TDP1-217ENST00000557782 LIMD1Q9UGP4 676 aa6.11□□□□□ -1.43
TDP1-217ENST00000557782 CERKQ8TCT0 537 aa6.1□□□□□ -1.43
TDP1-217ENST00000557782 PTCD2Q8WV60 388 aaKnown RBP6.1□□□□□ -1.43
TDP1-217ENST00000557782 NLRP7Q8WX94 980 aa6.1□□□□□ -1.43
TDP1-217ENST00000557782 OCEL1Q9H607 264 aa6.1□□□□□ -1.43
TDP1-217ENST00000557782 TBC1D2BQ9UPU7 963 aa6.1□□□□□ -1.43
TDP1-217ENST00000557782 TYW1BQ6NUM6 668 aa6.09□□□□□ -1.43
TDP1-217ENST00000557782 SLAIN1Q8ND83 568 aa6.09□□□□□ -1.43
TDP1-217ENST00000557782 L3MBTL3Q96JM7 780 aaPredicted RBP6.09□□□□□ -1.43
TDP1-217ENST00000557782 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.08□□□□□ -1.44
TDP1-217ENST00000557782 RFX1P22670 979 aa6.08□□□□□ -1.44
TDP1-217ENST00000557782 IRX5P78411 483 aaPredicted RBP6.08□□□□□ -1.44
TDP1-217ENST00000557782 WASHC4Q2M389 1173 aa6.08□□□□□ -1.44
TDP1-217ENST00000557782 TSR1Q2NL82 804 aaKnown RBP6.08□□□□□ -1.44
TDP1-217ENST00000557782 FAM161AQ3B820 660 aa6.08□□□□□ -1.44
TDP1-217ENST00000557782 FBXO31Q5XUX0 539 aaPredicted RBP6.08□□□□□ -1.44
TDP1-217ENST00000557782 ADGRG1Q9Y653 693 aa6.08□□□□□ -1.44
TDP1-217ENST00000557782 SPTLC1O15269 473 aa6.07□□□□□ -1.44
TDP1-217ENST00000557782 AP1G2O75843 785 aa6.07□□□□□ -1.44
TDP1-217ENST00000557782 IER5LQ5T953 404 aa6.07□□□□□ -1.44
TDP1-217ENST00000557782 HDGFL1Q5TGJ6 251 aa6.07□□□□□ -1.44
TDP1-217ENST00000557782 PADI6Q6TGC4 694 aa6.07□□□□□ -1.44
TDP1-217ENST00000557782 SND1Q7KZF4 910 aaKnown RBP eCLIP6.07□□□□□ -1.44
TDP1-217ENST00000557782 SPIRE2Q8WWL2 714 aa6.07□□□□□ -1.44
TDP1-217ENST00000557782 NDUFB9Q9Y6M9 179 aa6.07□□□□□ -1.44
TDP1-217ENST00000557782 IVNS1ABPQ9Y6Y0 642 aa6.07□□□□□ -1.44
TDP1-217ENST00000557782 HMGB1P09429 215 aaKnown RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms