RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 USP47Q96K76 1375 aa14.16□□□□□ -0.14
TMEM260-211ENST00000556648 ASXL2Q76L83 1435 aa14.16□□□□□ -0.14
TMEM260-211ENST00000556648 AFAP1Q8N556 730 aa14.15□□□□□ -0.14
TMEM260-211ENST00000556648 KDM2AQ9Y2K7 1162 aa14.15□□□□□ -0.14
TMEM260-211ENST00000556648 SENP3Q9H4L4 574 aaPredicted RBP14.14□□□□□ -0.15
TMEM260-211ENST00000556648 FANCAO15360 1455 aa14.14□□□□□ -0.15
TMEM260-211ENST00000556648 CCDC144AA2RUR9 1427 aa14.13□□□□□ -0.15
TMEM260-211ENST00000556648 SPAG9O60271 1321 aaKnown RBP14.13□□□□□ -0.15
TMEM260-211ENST00000556648 DCAF11Q8TEB1 546 aa14.13□□□□□ -0.15
TMEM260-211ENST00000556648 INO80Q9ULG1 1556 aaPredicted RBP14.12□□□□□ -0.15
TMEM260-211ENST00000556648 OSCARQ8IYS5 282 aa14.12□□□□□ -0.15
TMEM260-211ENST00000556648 ATP7AQ04656 1500 aa14.1□□□□□ -0.15
TMEM260-211ENST00000556648 A2MP01023 1474 aa14.1□□□□□ -0.15
TMEM260-211ENST00000556648 RTEL1-TNFRSF6BF6WH68 1400 aa14.1□□□□□ -0.15
TMEM260-211ENST00000556648 TRPM1Q7Z4N2 1603 aa14.09□□□□□ -0.15
TMEM260-211ENST00000556648 ADGRL1O94910 1474 aa14.09□□□□□ -0.15
TMEM260-211ENST00000556648 E9PCH4 1651 aa14.09□□□□□ -0.15
TMEM260-211ENST00000556648 CCDC184Q52MB2 194 aa14.08□□□□□ -0.15
TMEM260-211ENST00000556648 PRAG1Q86YV5 1406 aa14.08□□□□□ -0.15
TMEM260-211ENST00000556648 RGL3Q3MIN7 710 aa14.08□□□□□ -0.16
TMEM260-211ENST00000556648 CARD11Q9BXL7 1154 aa14.08□□□□□ -0.16
TMEM260-211ENST00000556648 SCAPERQ9BY12 1400 aa14.08□□□□□ -0.16
TMEM260-211ENST00000556648 DEPDC5O75140 1603 aa14.07□□□□□ -0.16
TMEM260-211ENST00000556648 POLR3GLQ9BT43 218 aa14.06□□□□□ -0.16
TMEM260-211ENST00000556648 ATP10AO60312 1499 aa14.05□□□□□ -0.16
TMEM260-211ENST00000556648 ROCK2O75116 1388 aaKnown RBP14.05□□□□□ -0.16
TMEM260-211ENST00000556648 PRKRIP1Q9H875 184 aaPredicted RBP14.05□□□□□ -0.16
TMEM260-211ENST00000556648 DHX29Q7Z478 1369 aaKnown RBP14.04□□□□□ -0.16
TMEM260-211ENST00000556648 SUPT16HQ9Y5B9 1047 aaKnown RBP14.04□□□□□ -0.16
TMEM260-211ENST00000556648 MROH1Q8NDA8 1641 aa14.04□□□□□ -0.16
TMEM260-211ENST00000556648 KIDINS220Q9ULH0 1771 aa14.03□□□□□ -0.16
TMEM260-211ENST00000556648 ST20-MTHFSA0A0A6YYL1 179 aa14.03□□□□□ -0.16
TMEM260-211ENST00000556648 SPHKAPQ2M3C7 1700 aa14.02□□□□□ -0.16
TMEM260-211ENST00000556648 NBPF1Q3BBV0 1214 aa14.02□□□□□ -0.16
TMEM260-211ENST00000556648 VWDEQ8N2E2 1590 aa14.02□□□□□ -0.16
TMEM260-211ENST00000556648 TET3O43151 1660 aa14.02□□□□□ -0.17
TMEM260-211ENST00000556648 MYT1LQ9UL68 1186 aa14.02□□□□□ -0.17
TMEM260-211ENST00000556648 CLTCL1P53675 1640 aa14.02□□□□□ -0.17
TMEM260-211ENST00000556648 TRPM2O94759 1503 aa14.01□□□□□ -0.17
TMEM260-211ENST00000556648 NPM1P06748 294 aaKnown RBP eCLIP14□□□□□ -0.17
TMEM260-211ENST00000556648 CNGB1Q14028 1251 aaPredicted RBP14□□□□□ -0.17
TMEM260-211ENST00000556648 EIF2AK4Q9P2K8 1649 aaKnown RBP14□□□□□ -0.17
TMEM260-211ENST00000556648 PRDM15P57071 1507 aaPredicted RBP14□□□□□ -0.17
TMEM260-211ENST00000556648 CEP152O94986 1710 aa13.99□□□□□ -0.17
TMEM260-211ENST00000556648 LAMC1P11047 1609 aa13.99□□□□□ -0.17
TMEM260-211ENST00000556648 KIF3BO15066 747 aa13.98□□□□□ -0.17
TMEM260-211ENST00000556648 HNRNPUQ00839 825 aaKnown RBP eCLIP13.98□□□□□ -0.17
TMEM260-211ENST00000556648 CD109Q6YHK3 1445 aa13.98□□□□□ -0.17
TMEM260-211ENST00000556648 RNF17Q9BXT8 1623 aaKnown RBP13.98□□□□□ -0.17
TMEM260-211ENST00000556648 GPRASP1Q5JY77 1395 aa13.98□□□□□ -0.17
TMEM260-211ENST00000556648 PTPRTO14522 1441 aa13.98□□□□□ -0.17
TMEM260-211ENST00000556648 MADDQ8WXG6 1647 aa13.98□□□□□ -0.17
TMEM260-211ENST00000556648 CFAP74Q9C0B2 1584 aa13.97□□□□□ -0.17
TMEM260-211ENST00000556648 ZNF518AQ6AHZ1 1483 aa13.97□□□□□ -0.17
TMEM260-211ENST00000556648 MRS2Q9HD23 443 aa13.97□□□□□ -0.17
TMEM260-211ENST00000556648 UGGT1Q9NYU2 1555 aa13.96□□□□□ -0.17
TMEM260-211ENST00000556648 POGZQ7Z3K3 1410 aa13.96□□□□□ -0.17
TMEM260-211ENST00000556648 ARID4BQ4LE39 1312 aaPredicted RBP13.96□□□□□ -0.17
TMEM260-211ENST00000556648 FRMPD1Q5SYB0 1578 aa13.95□□□□□ -0.18
TMEM260-211ENST00000556648 KANK1Q14678 1352 aa13.95□□□□□ -0.18
TMEM260-211ENST00000556648 PPRC1Q5VV67 1664 aaKnown RBP13.95□□□□□ -0.18
TMEM260-211ENST00000556648 FAM9BQ8IZU0 186 aa13.94□□□□□ -0.18
TMEM260-211ENST00000556648 EFCAB6Q5THR3 1501 aa13.93□□□□□ -0.18
TMEM260-211ENST00000556648 ABCA6Q8N139 1617 aa13.93□□□□□ -0.18
TMEM260-211ENST00000556648 HECW2Q9P2P5 1572 aa13.93□□□□□ -0.18
TMEM260-211ENST00000556648 COL17A1Q9UMD9 1497 aaPredicted RBP13.92□□□□□ -0.18
TMEM260-211ENST00000556648 DISP3Q9P2K9 1392 aa13.92□□□□□ -0.18
TMEM260-211ENST00000556648 FKBP8Q14318 412 aa13.91□□□□□ -0.18
TMEM260-211ENST00000556648 MROH2AA6NES4 1674 aa13.91□□□□□ -0.18
TMEM260-211ENST00000556648 IQGAP1P46940 1657 aa13.9□□□□□ -0.18
TMEM260-211ENST00000556648 BCANQ96GW7 911 aa13.9□□□□□ -0.18
TMEM260-211ENST00000556648 TESK2Q96S53 571 aa13.9□□□□□ -0.18
TMEM260-211ENST00000556648 MLH3Q9UHC1 1453 aa13.89□□□□□ -0.19
TMEM260-211ENST00000556648 LMTK2Q8IWU2 1503 aa13.88□□□□□ -0.19
TMEM260-211ENST00000556648 RAPGEF3O95398 923 aa13.87□□□□□ -0.19
TMEM260-211ENST00000556648 MAP3K4Q9Y6R4 1608 aa13.87□□□□□ -0.19
TMEM260-211ENST00000556648 NEO1Q92859 1461 aa13.86□□□□□ -0.19
TMEM260-211ENST00000556648 RIMBP3CA6NJZ7 1639 aa13.86□□□□□ -0.19
TMEM260-211ENST00000556648 RIMBP3BA6NNM3 1639 aa13.86□□□□□ -0.19
TMEM260-211ENST00000556648 RIMBP3Q9UFD9 1639 aa13.86□□□□□ -0.19
TMEM260-211ENST00000556648 IFT172Q9UG01 1749 aa13.86□□□□□ -0.19
TMEM260-211ENST00000556648 KIF1BO60333 1816 aa13.86□□□□□ -0.19
TMEM260-211ENST00000556648 DIP2CQ9Y2E4 1556 aa13.85□□□□□ -0.19
TMEM260-211ENST00000556648 RICTORQ6R327 1708 aa13.85□□□□□ -0.19
TMEM260-211ENST00000556648 CYB5RLQ6IPT4 315 aa13.85□□□□□ -0.19
TMEM260-211ENST00000556648 NEURL4Q96JN8 1562 aa13.84□□□□□ -0.19
TMEM260-211ENST00000556648 NPATQ14207 1427 aa13.84□□□□□ -0.19
TMEM260-211ENST00000556648 ABCC3O15438 1527 aa13.83□□□□□ -0.19
TMEM260-211ENST00000556648 CFAP65Q6ZU64 1925 aaKnown RBP13.83□□□□□ -0.2
TMEM260-211ENST00000556648 GGT6Q6P531 493 aa13.83□□□□□ -0.2
TMEM260-211ENST00000556648 ADGRB3O60242 1522 aa13.82□□□□□ -0.2
TMEM260-211ENST00000556648 SENP3-EIF4A1A0A087X0R7 540 aa13.82□□□□□ -0.2
TMEM260-211ENST00000556648 ZBED9Q6R2W3 1325 aa13.82□□□□□ -0.2
TMEM260-211ENST00000556648 MYOM2P54296 1465 aa13.82□□□□□ -0.2
TMEM260-211ENST00000556648 SCAF11Q99590 1463 aaKnown RBP13.82□□□□□ -0.2
TMEM260-211ENST00000556648 SIGLEC1Q9BZZ2 1709 aa13.82□□□□□ -0.2
TMEM260-211ENST00000556648 KIAA1210Q9ULL0 1709 aa13.82□□□□□ -0.2
TMEM260-211ENST00000556648 NEFLP07196 543 aa13.81□□□□□ -0.2
TMEM260-211ENST00000556648 ADGRF5Q8IZF2 1346 aa13.81□□□□□ -0.2
TMEM260-211ENST00000556648 CAMSAP1Q5T5Y3 1602 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 150.3 ms