RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 POTEEQ6S8J3 1075 aa11.01□□□□□ -0.65
SCFD1-221ENST00000556534 POTEMA6NI47 508 aa11□□□□□ -0.65
SCFD1-221ENST00000556534 C6orf132Q5T0Z8 1188 aa11□□□□□ -0.65
SCFD1-221ENST00000556534 ZNF687Q8N1G0 1237 aa11□□□□□ -0.65
SCFD1-221ENST00000556534 POTEGQ6S5H5 508 aa10.99□□□□□ -0.65
SCFD1-221ENST00000556534 GPIHBP1Q8IV16 184 aa10.99□□□□□ -0.65
SCFD1-221ENST00000556534 NUTM2FA1L443 756 aa10.98□□□□□ -0.65
SCFD1-221ENST00000556534 PTPREP23469 700 aa10.97□□□□□ -0.65
SCFD1-221ENST00000556534 KCNK17Q96T54 332 aa10.97□□□□□ -0.65
SCFD1-221ENST00000556534 COL9A1P20849 921 aa10.96□□□□□ -0.65
SCFD1-221ENST00000556534 PBX2P40425 430 aa10.96□□□□□ -0.65
SCFD1-221ENST00000556534 PTGDRQ13258 359 aa10.96□□□□□ -0.65
SCFD1-221ENST00000556534 NPDC1Q9NQX5 325 aaPredicted RBP10.96□□□□□ -0.65
SCFD1-221ENST00000556534 PPP1R3GB7ZBB8 358 aa10.94□□□□□ -0.66
SCFD1-221ENST00000556534 PSEN2P49810 448 aa10.94□□□□□ -0.66
SCFD1-221ENST00000556534 AXIN2Q9Y2T1 843 aa10.94□□□□□ -0.66
SCFD1-221ENST00000556534 ARHGAP33O14559 1287 aa10.93□□□□□ -0.66
SCFD1-221ENST00000556534 ZC3H15Q8WU90 426 aaKnown RBP10.93□□□□□ -0.66
SCFD1-221ENST00000556534 FCHSD2O94868 740 aa10.92□□□□□ -0.66
SCFD1-221ENST00000556534 DMRTA1Q5VZB9 504 aa10.91□□□□□ -0.66
SCFD1-221ENST00000556534 CERKQ8TCT0 537 aa10.91□□□□□ -0.66
SCFD1-221ENST00000556534 KCNH8Q96L42 1107 aa10.91□□□□□ -0.66
SCFD1-221ENST00000556534 PCDH10Q9P2E7 1040 aa10.9□□□□□ -0.66
SCFD1-221ENST00000556534 HIC1Q14526 733 aa10.89□□□□□ -0.67
SCFD1-221ENST00000556534 KRTAP3-3Q9BYR6 98 aa10.89□□□□□ -0.67
SCFD1-221ENST00000556534 KRTAP3-2Q9BYR7 98 aa10.89□□□□□ -0.67
SCFD1-221ENST00000556534 ZBED2Q9BTP6 218 aa10.88□□□□□ -0.67
SCFD1-221ENST00000556534 RBM27Q9P2N5 1060 aaKnown RBP10.88□□□□□ -0.67
SCFD1-221ENST00000556534 GNPATO15228 680 aa10.87□□□□□ -0.67
SCFD1-221ENST00000556534 ZMYND10O75800 440 aa10.87□□□□□ -0.67
SCFD1-221ENST00000556534 TPRNQ4KMQ1 711 aa10.87□□□□□ -0.67
SCFD1-221ENST00000556534 PRSS12P56730 875 aa10.86□□□□□ -0.67
SCFD1-221ENST00000556534 LSM11P83369 360 aaKnown RBP eCLIP10.86□□□□□ -0.67
SCFD1-221ENST00000556534 PADI6Q6TGC4 694 aa10.86□□□□□ -0.67
SCFD1-221ENST00000556534 CDAN1Q8IWY9 1227 aa10.86□□□□□ -0.67
SCFD1-221ENST00000556534 TTC13Q8NBP0 860 aa10.86□□□□□ -0.67
SCFD1-221ENST00000556534 FECHP22830 423 aa10.85□□□□□ -0.67
SCFD1-221ENST00000556534 PROX2Q3B8N5 592 aa10.85□□□□□ -0.67
SCFD1-221ENST00000556534 CDCA7LQ96GN5 454 aa10.85□□□□□ -0.67
SCFD1-221ENST00000556534 SLC4A5Q9BY07 1137 aa10.85□□□□□ -0.67
SCFD1-221ENST00000556534 FAM198AQ9UFP1 575 aa10.85□□□□□ -0.67
SCFD1-221ENST00000556534 BARGINQ6ZT62 677 aa10.84□□□□□ -0.67
SCFD1-221ENST00000556534 TRIM6-TRIM34B2RNG4 842 aa10.83□□□□□ -0.68
SCFD1-221ENST00000556534 TSKSQ9UJT2 592 aa10.83□□□□□ -0.68
SCFD1-221ENST00000556534 TK2O00142 265 aa10.81□□□□□ -0.68
SCFD1-221ENST00000556534 VPS9D1Q9Y2B5 631 aa10.81□□□□□ -0.68
SCFD1-221ENST00000556534 PRKCSHP14314 528 aaPredicted RBP10.8□□□□□ -0.68
SCFD1-221ENST00000556534 MAP2K5Q13163 448 aa10.8□□□□□ -0.68
SCFD1-221ENST00000556534 ONECUT3O60422 494 aaPredicted RBP10.79□□□□□ -0.68
SCFD1-221ENST00000556534 ADGRD1Q6QNK2 874 aa10.79□□□□□ -0.68
SCFD1-221ENST00000556534 C3orf80F5H4A9 247 aa10.78□□□□□ -0.68
SCFD1-221ENST00000556534 RABGEF1Q9UJ41 708 aa10.77□□□□□ -0.69
SCFD1-221ENST00000556534 ADGRG1Q9Y653 693 aa10.77□□□□□ -0.69
SCFD1-221ENST00000556534 ANKRD13DQ6ZTN6 518 aa10.76□□□□□ -0.69
SCFD1-221ENST00000556534 KIAA1468Q9P260 1216 aa10.76□□□□□ -0.69
SCFD1-221ENST00000556534 MINK1Q8N4C8 1332 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-221ENST00000556534 NBPF26B4DH59 902 aa10.75□□□□□ -0.69
SCFD1-221ENST00000556534 HRO43593 1189 aa10.75□□□□□ -0.69
SCFD1-221ENST00000556534 FAM161AQ3B820 660 aa10.75□□□□□ -0.69
SCFD1-221ENST00000556534 CCDC102AQ96A19 550 aa10.75□□□□□ -0.69
SCFD1-221ENST00000556534 BHMG1C9JSJ3 638 aaPredicted RBP10.74□□□□□ -0.69
SCFD1-221ENST00000556534 IRF6O14896 467 aa10.74□□□□□ -0.69
SCFD1-221ENST00000556534 PACS2Q86VP3 889 aa10.74□□□□□ -0.69
SCFD1-221ENST00000556534 SLC24A3Q9HC58 644 aa10.74□□□□□ -0.69
SCFD1-221ENST00000556534 KRI1Q8N9T8 703 aaKnown RBP10.72□□□□□ -0.69
SCFD1-221ENST00000556534 TATDN2Q93075 761 aa10.72□□□□□ -0.69
SCFD1-221ENST00000556534 PNMA3Q9UL41 463 aa10.72□□□□□ -0.69
SCFD1-221ENST00000556534 NUDT18Q6ZVK8 323 aa10.71□□□□□ -0.69
SCFD1-221ENST00000556534 METTL3Q86U44 580 aaKnown RBP10.71□□□□□ -0.69
SCFD1-221ENST00000556534 PXYLP1Q8TE99 480 aa10.71□□□□□ -0.69
SCFD1-221ENST00000556534 EYA1Q99502 592 aa10.71□□□□□ -0.69
SCFD1-221ENST00000556534 SMAPO00193 183 aa10.7□□□□□ -0.7
SCFD1-221ENST00000556534 NBPF3Q9H094 633 aa10.7□□□□□ -0.7
SCFD1-221ENST00000556534 SEPT9Q9UHD8 586 aaPredicted RBP10.7□□□□□ -0.7
SCFD1-221ENST00000556534 PHOX2BQ99453 314 aa10.69□□□□□ -0.7
SCFD1-221ENST00000556534 OATP04181 439 aa10.68□□□□□ -0.7
SCFD1-221ENST00000556534 RBM46Q8TBY0 533 aaKnown RBP10.68□□□□□ -0.7
SCFD1-221ENST00000556534 AK7Q96M32 723 aa10.68□□□□□ -0.7
SCFD1-221ENST00000556534 FAM98CQ17RN3 349 aaKnown RBP10.66□□□□□ -0.7
SCFD1-221ENST00000556534 LAPTM4BQ86VI4 370 aa10.66□□□□□ -0.7
SCFD1-221ENST00000556534 TRIM66O15016 1216 aa10.65□□□□□ -0.7
SCFD1-221ENST00000556534 MRPL50Q8N5N7 158 aaKnown RBP10.65□□□□□ -0.7
SCFD1-221ENST00000556534 RCCD1A6NED2 376 aa10.64□□□□□ -0.71
SCFD1-221ENST00000556534 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.63□□□□□ -0.71
SCFD1-221ENST00000556534 DNAJB2P25686 324 aa10.63□□□□□ -0.71
SCFD1-221ENST00000556534 AMHR2Q16671 573 aa10.63□□□□□ -0.71
SCFD1-221ENST00000556534 NLRP7Q8WX94 980 aa10.63□□□□□ -0.71
SCFD1-221ENST00000556534 ZFRQ96KR1 1074 aaKnown RBP10.61□□□□□ -0.71
SCFD1-221ENST00000556534 TMEM134Q9H6X4 195 aa10.61□□□□□ -0.71
SCFD1-221ENST00000556534 SPNS2Q8IVW8 549 aa10.59□□□□□ -0.71
SCFD1-221ENST00000556534 STAC3Q96MF2 364 aa10.59□□□□□ -0.71
SCFD1-221ENST00000556534 MDM2Q00987 491 aaPredicted RBP10.58□□□□□ -0.72
SCFD1-221ENST00000556534 PDE4DQ08499 809 aa10.58□□□□□ -0.72
SCFD1-221ENST00000556534 TMUB1Q9BVT8 246 aa10.58□□□□□ -0.72
SCFD1-221ENST00000556534 SWT1Q5T5J6 900 aaKnown RBP10.57□□□□□ -0.72
SCFD1-221ENST00000556534 SAMD7Q7Z3H4 446 aa10.57□□□□□ -0.72
SCFD1-221ENST00000556534 PARP9Q8IXQ6 854 aa10.57□□□□□ -0.72
SCFD1-221ENST00000556534 REPIN1Q9BWE0 567 aaKnown RBP10.57□□□□□ -0.72
SCFD1-221ENST00000556534 CLCN1P35523 988 aa10.55□□□□□ -0.72
SCFD1-221ENST00000556534 ANKK1Q8NFD2 765 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms