RNA–Protein interactions for RNA: ENST00000556360.1

PCNX4-212, Transcript of pecanex 4, humanhuman

TSL 3

Gene PCNX4, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-212ENST00000556360 PDIA6Q15084 440 aa12.91□□□□□ -0.34
PCNX4-212ENST00000556360 MRPL50Q8N5N7 158 aaKnown RBP12.91□□□□□ -0.34
PCNX4-212ENST00000556360 THSD4Q6ZMP0 1018 aa12.9□□□□□ -0.34
PCNX4-212ENST00000556360 RABGEF1Q9UJ41 708 aa12.9□□□□□ -0.34
PCNX4-212ENST00000556360 ARIH1Q9Y4X5 557 aaPredicted RBP12.9□□□□□ -0.34
PCNX4-212ENST00000556360 C6orf132Q5T0Z8 1188 aa12.88□□□□□ -0.35
PCNX4-212ENST00000556360 PAXIP1Q6ZW49 1069 aaPredicted RBP12.88□□□□□ -0.35
PCNX4-212ENST00000556360 ONECUT3O60422 494 aaPredicted RBP12.87□□□□□ -0.35
PCNX4-212ENST00000556360 PROX2Q3B8N5 592 aa12.87□□□□□ -0.35
PCNX4-212ENST00000556360 SPDYE16A6NNV3 312 aaPredicted RBP12.86□□□□□ -0.35
PCNX4-212ENST00000556360 E2F4Q16254 413 aa12.85□□□□□ -0.35
PCNX4-212ENST00000556360 WNT2BQ93097 391 aa12.85□□□□□ -0.35
PCNX4-212ENST00000556360 GOLGA8CPA6NN73 597 aa12.84□□□□□ -0.35
PCNX4-212ENST00000556360 CFAP44Q96MT7 982 aa12.84□□□□□ -0.35
PCNX4-212ENST00000556360 PTPN5P54829 565 aa12.83□□□□□ -0.36
PCNX4-212ENST00000556360 LAPTM4BQ86VI4 370 aa12.83□□□□□ -0.36
PCNX4-212ENST00000556360 DDX12PQ92771 950 aa12.83□□□□□ -0.36
PCNX4-212ENST00000556360 EN1Q05925 392 aaPredicted RBP12.81□□□□□ -0.36
PCNX4-212ENST00000556360 IFFO2Q5TF58 517 aa12.79□□□□□ -0.36
PCNX4-212ENST00000556360 KIAA1468Q9P260 1216 aa12.79□□□□□ -0.36
PCNX4-212ENST00000556360 TRIM6-TRIM34B2RNG4 842 aa12.78□□□□□ -0.36
PCNX4-212ENST00000556360 NBR1Q14596 966 aa12.78□□□□□ -0.36
PCNX4-212ENST00000556360 RBM33Q96EV2 1170 aaKnown RBP12.77□□□□□ -0.37
PCNX4-212ENST00000556360 ANKK1Q8NFD2 765 aa12.76□□□□□ -0.37
PCNX4-212ENST00000556360 WDR70Q9NW82 654 aa12.76□□□□□ -0.37
PCNX4-212ENST00000556360 TSR1Q2NL82 804 aaKnown RBP12.73□□□□□ -0.37
PCNX4-212ENST00000556360 SOWAHBA6NEL2 793 aa12.72□□□□□ -0.37
PCNX4-212ENST00000556360 MAP3K7O43318 606 aa12.72□□□□□ -0.37
PCNX4-212ENST00000556360 ZFRQ96KR1 1074 aaKnown RBP12.72□□□□□ -0.37
PCNX4-212ENST00000556360 PRIM1P49642 420 aaKnown RBP12.7□□□□□ -0.38
PCNX4-212ENST00000556360 FAM98CQ17RN3 349 aaKnown RBP12.7□□□□□ -0.38
PCNX4-212ENST00000556360 SEPT9Q9UHD8 586 aaPredicted RBP12.69□□□□□ -0.38
PCNX4-212ENST00000556360 BCAMP50895 628 aa12.68□□□□□ -0.38
PCNX4-212ENST00000556360 CERKQ8TCT0 537 aa12.68□□□□□ -0.38
PCNX4-212ENST00000556360 TSKSQ9UJT2 592 aa12.68□□□□□ -0.38
PCNX4-212ENST00000556360 NYAP1Q6ZVC0 841 aa12.67□□□□□ -0.38
PCNX4-212ENST00000556360 OSBPP22059 807 aa12.66□□□□□ -0.38
PCNX4-212ENST00000556360 GRXCR2A6NFK2 248 aa12.64□□□□□ -0.39
PCNX4-212ENST00000556360 ITGBL1O95965 494 aaPredicted RBP12.64□□□□□ -0.39
PCNX4-212ENST00000556360 PRSS12P56730 875 aa12.64□□□□□ -0.39
PCNX4-212ENST00000556360 PACS2Q86VP3 889 aa12.64□□□□□ -0.39
PCNX4-212ENST00000556360 CDCA7LQ96GN5 454 aa12.64□□□□□ -0.39
PCNX4-212ENST00000556360 RGS20O76081 388 aa12.63□□□□□ -0.39
PCNX4-212ENST00000556360 A0A0G2JS52 829 aa12.62□□□□□ -0.39
PCNX4-212ENST00000556360 FAM198AQ9UFP1 575 aa12.62□□□□□ -0.39
PCNX4-212ENST00000556360 TSHZ2Q9NRE2 1034 aa12.6□□□□□ -0.39
PCNX4-212ENST00000556360 WBP1LQ9NX94 342 aa12.6□□□□□ -0.39
PCNX4-212ENST00000556360 RBM27Q9P2N5 1060 aaKnown RBP12.6□□□□□ -0.39
PCNX4-212ENST00000556360 LRCH3Q96II8 777 aa12.59□□□□□ -0.39
PCNX4-212ENST00000556360 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.59□□□□□ -0.39
PCNX4-212ENST00000556360 TSR3Q9UJK0 312 aaKnown RBP12.58□□□□□ -0.4
PCNX4-212ENST00000556360 CDHR5Q9HBB8 845 aa12.57□□□□□ -0.4
PCNX4-212ENST00000556360 ARHGEF1Q92888 912 aaKnown RBP12.56□□□□□ -0.4
PCNX4-212ENST00000556360 TTC13Q8NBP0 860 aa12.55□□□□□ -0.4
PCNX4-212ENST00000556360 NBPF26B4DH59 902 aa12.54□□□□□ -0.4
PCNX4-212ENST00000556360 C3orf80F5H4A9 247 aa12.54□□□□□ -0.4
PCNX4-212ENST00000556360 HPS5Q9UPZ3 1129 aa12.54□□□□□ -0.4
PCNX4-212ENST00000556360 KCNV2Q8TDN2 545 aa12.53□□□□□ -0.4
PCNX4-212ENST00000556360 TATDN2Q93075 761 aa12.53□□□□□ -0.4
PCNX4-212ENST00000556360 NPDC1Q9NQX5 325 aaPredicted RBP12.53□□□□□ -0.4
PCNX4-212ENST00000556360 SMAPO00193 183 aa12.51□□□□□ -0.41
PCNX4-212ENST00000556360 PNMA3Q9UL41 463 aa12.5□□□□□ -0.41
PCNX4-212ENST00000556360 SAMD7Q7Z3H4 446 aa12.49□□□□□ -0.41
PCNX4-212ENST00000556360 KCNC4Q03721 635 aa12.47□□□□□ -0.41
PCNX4-212ENST00000556360 MLLT3P42568 568 aaPredicted RBP12.46□□□□□ -0.41
PCNX4-212ENST00000556360 PPP4CP60510 307 aa12.46□□□□□ -0.41
PCNX4-212ENST00000556360 NUDT18Q6ZVK8 323 aa12.46□□□□□ -0.41
PCNX4-212ENST00000556360 PADI6Q6TGC4 694 aa12.44□□□□□ -0.42
PCNX4-212ENST00000556360 P3H3Q8IVL6 736 aa12.41□□□□□ -0.42
PCNX4-212ENST00000556360 TJAP1Q5JTD0 557 aa12.39□□□□□ -0.43
PCNX4-212ENST00000556360 PTGDRQ13258 359 aa12.38□□□□□ -0.43
PCNX4-212ENST00000556360 EYA1Q99502 592 aa12.38□□□□□ -0.43
PCNX4-212ENST00000556360 HDGFP51858 240 aaKnown RBP12.36□□□□□ -0.43
PCNX4-212ENST00000556360 NECTIN2Q92692 538 aa12.36□□□□□ -0.43
PCNX4-212ENST00000556360 SWT1Q5T5J6 900 aaKnown RBP12.34□□□□□ -0.43
PCNX4-212ENST00000556360 IRX2Q9BZI1 471 aaPredicted RBP12.34□□□□□ -0.43
PCNX4-212ENST00000556360 PLCB2Q00722 1185 aa12.33□□□□□ -0.44
PCNX4-212ENST00000556360 SLF2Q8IX21 1173 aa12.33□□□□□ -0.44
PCNX4-212ENST00000556360 MTRQ99707 1265 aa12.33□□□□□ -0.44
PCNX4-212ENST00000556360 IL21Q9HBE4 155 aa12.33□□□□□ -0.44
PCNX4-212ENST00000556360 APLP1P51693 650 aa12.32□□□□□ -0.44
PCNX4-212ENST00000556360 ADGRG1Q9Y653 693 aa12.29□□□□□ -0.44
PCNX4-212ENST00000556360 SEMA3EO15041 775 aa12.28□□□□□ -0.44
PCNX4-212ENST00000556360 RNF40O75150 1001 aa12.28□□□□□ -0.44
PCNX4-212ENST00000556360 DNAJB2P25686 324 aa12.26□□□□□ -0.45
PCNX4-212ENST00000556360 NUTM2FA1L443 756 aa12.25□□□□□ -0.45
PCNX4-212ENST00000556360 SLC4A3P48751 1232 aa12.25□□□□□ -0.45
PCNX4-212ENST00000556360 RBM46Q8TBY0 533 aaKnown RBP12.25□□□□□ -0.45
PCNX4-212ENST00000556360 TMEM134Q9H6X4 195 aa12.25□□□□□ -0.45
PCNX4-212ENST00000556360 TESPA1A2RU30 521 aaPredicted RBP12.24□□□□□ -0.45
PCNX4-212ENST00000556360 FCHSD2O94868 740 aa12.24□□□□□ -0.45
PCNX4-212ENST00000556360 ZNF516Q92618 1163 aa12.24□□□□□ -0.45
PCNX4-212ENST00000556360 PRR14Q9BWN1 585 aa12.23□□□□□ -0.45
PCNX4-212ENST00000556360 PPP1R18Q6NYC8 613 aa12.2□□□□□ -0.46
PCNX4-212ENST00000556360 RCCD1A6NED2 376 aa12.19□□□□□ -0.46
PCNX4-212ENST00000556360 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.17□□□□□ -0.46
PCNX4-212ENST00000556360 HIC1Q14526 733 aa12.17□□□□□ -0.46
PCNX4-212ENST00000556360 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.17□□□□□ -0.46
PCNX4-212ENST00000556360 COPS2P61201 443 aa12.16□□□□□ -0.46
PCNX4-212ENST00000556360 FAM161AQ3B820 660 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms