RNA–Protein interactions for RNA: ENST00000556303.1

SNX6-207, Transcript of sorting nexin 6, humanhuman

TSL 2

Gene SNX6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-207ENST00000556303 SHANK2Q9UPX8 1470 aa19.62■□□□□ 0.73
SNX6-207ENST00000556303 FGD6Q6ZV73 1430 aa19.61■□□□□ 0.73
SNX6-207ENST00000556303 PTPN23Q9H3S7 1636 aa19.61■□□□□ 0.73
SNX6-207ENST00000556303 TCOF1Q13428 1488 aaKnown RBP19.6■□□□□ 0.73
SNX6-207ENST00000556303 NCOA1Q15788 1441 aa19.6■□□□□ 0.73
SNX6-207ENST00000556303 PZPP20742 1482 aa19.6■□□□□ 0.73
SNX6-207ENST00000556303 ABCC5O15440 1437 aa19.59■□□□□ 0.73
SNX6-207ENST00000556303 DUOX2Q9NRD8 1548 aa19.59■□□□□ 0.73
SNX6-207ENST00000556303 EIF2AK4Q9P2K8 1649 aaKnown RBP19.58■□□□□ 0.73
SNX6-207ENST00000556303 PKD2Q13563 968 aa19.58■□□□□ 0.72
SNX6-207ENST00000556303 PLA2R1Q13018 1463 aa19.57■□□□□ 0.72
SNX6-207ENST00000556303 CERKQ8TCT0 537 aa19.57■□□□□ 0.72
SNX6-207ENST00000556303 RNF17Q9BXT8 1623 aaKnown RBP19.57■□□□□ 0.72
SNX6-207ENST00000556303 ZNF142P52746 1687 aaPredicted RBP19.56■□□□□ 0.72
SNX6-207ENST00000556303 DAPK1P53355 1430 aa19.56■□□□□ 0.72
SNX6-207ENST00000556303 KIF15Q9NS87 1388 aa19.56■□□□□ 0.72
SNX6-207ENST00000556303 CAMSAP1Q5T5Y3 1602 aa19.55■□□□□ 0.72
SNX6-207ENST00000556303 MYO3AQ8NEV4 1616 aa19.55■□□□□ 0.72
SNX6-207ENST00000556303 TNRQ92752 1358 aa19.55■□□□□ 0.72
SNX6-207ENST00000556303 A2ML1A8K2U0 1454 aa19.54■□□□□ 0.72
SNX6-207ENST00000556303 CEP170BQ9Y4F5 1589 aaPredicted RBP19.54■□□□□ 0.72
SNX6-207ENST00000556303 ERBINQ96RT1 1412 aa19.54■□□□□ 0.72
SNX6-207ENST00000556303 DNMT1P26358 1616 aaKnown RBP19.53■□□□□ 0.72
SNX6-207ENST00000556303 ANKRD30AQ9BXX3 1397 aa19.53■□□□□ 0.72
SNX6-207ENST00000556303 CROCC2H7BZ55 1655 aa19.52■□□□□ 0.72
SNX6-207ENST00000556303 FBXO31Q5XUX0 539 aaPredicted RBP19.52■□□□□ 0.72
SNX6-207ENST00000556303 RRP7BPQ9NSQ0 103 aa19.52■□□□□ 0.72
SNX6-207ENST00000556303 ZC3H13Q5T200 1668 aaKnown RBP19.52■□□□□ 0.71
SNX6-207ENST00000556303 ABCC3O15438 1527 aa19.51■□□□□ 0.71
SNX6-207ENST00000556303 NLRP1Q9C000 1473 aa19.5■□□□□ 0.71
SNX6-207ENST00000556303 NCKAP5LQ9HCH0 1330 aa19.48■□□□□ 0.71
SNX6-207ENST00000556303 THEMISQ8N1K5 641 aaPredicted RBP19.47■□□□□ 0.71
SNX6-207ENST00000556303 MROH1Q8NDA8 1641 aa19.47■□□□□ 0.71
SNX6-207ENST00000556303 ARHGAP31Q2M1Z3 1444 aa19.46■□□□□ 0.71
SNX6-207ENST00000556303 ADGRL2O95490 1459 aa19.46■□□□□ 0.71
SNX6-207ENST00000556303 CHIC2Q9UKJ5 165 aa19.45■□□□□ 0.7
SNX6-207ENST00000556303 PRDM15P57071 1507 aaPredicted RBP19.45■□□□□ 0.7
SNX6-207ENST00000556303 KANK1Q14678 1352 aa19.44■□□□□ 0.7
SNX6-207ENST00000556303 SPATA31D1Q6ZQQ2 1576 aa19.44■□□□□ 0.7
SNX6-207ENST00000556303 FAM50AQ14320 339 aaKnown RBP19.44■□□□□ 0.7
SNX6-207ENST00000556303 PHF23Q9BUL5 403 aaPredicted RBP19.43■□□□□ 0.7
SNX6-207ENST00000556303 ANKLE2Q86XL3 938 aa19.42■□□□□ 0.7
SNX6-207ENST00000556303 ERVK-7P63135 1459 aa19.41■□□□□ 0.7
SNX6-207ENST00000556303 IQSEC2Q5JU85 1478 aa19.41■□□□□ 0.7
SNX6-207ENST00000556303 UGGT1Q9NYU2 1555 aa19.4■□□□□ 0.7
SNX6-207ENST00000556303 DEPDC5O75140 1603 aa19.4■□□□□ 0.7
SNX6-207ENST00000556303 LTBP4Q8N2S1 1624 aa19.4■□□□□ 0.7
SNX6-207ENST00000556303 LMTK2Q8IWU2 1503 aa19.38■□□□□ 0.69
SNX6-207ENST00000556303 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.38■□□□□ 0.694e-8■□□□□ 11.3
SNX6-207ENST00000556303 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.38■□□□□ 0.69
SNX6-207ENST00000556303 CEP152O94986 1710 aa19.37■□□□□ 0.69
SNX6-207ENST00000556303 ANKRD50Q9ULJ7 1429 aa19.36■□□□□ 0.69
SNX6-207ENST00000556303 VWDEQ8N2E2 1590 aa19.36■□□□□ 0.69
SNX6-207ENST00000556303 ROCK1Q13464 1354 aa19.35■□□□□ 0.69
SNX6-207ENST00000556303 MED14O60244 1454 aa19.35■□□□□ 0.69
SNX6-207ENST00000556303 ZNF335Q9H4Z2 1342 aaPredicted RBP19.34■□□□□ 0.69
SNX6-207ENST00000556303 POLR1AO95602 1720 aaPredicted RBP19.34■□□□□ 0.69
SNX6-207ENST00000556303 CFAP65Q6ZU64 1925 aaKnown RBP19.33■□□□□ 0.69
SNX6-207ENST00000556303 NEURL4Q96JN8 1562 aa19.31■□□□□ 0.68
SNX6-207ENST00000556303 NPHP4O75161 1426 aaPredicted RBP19.29■□□□□ 0.68
SNX6-207ENST00000556303 SLC52A1Q9NWF4 448 aa19.28■□□□□ 0.68
SNX6-207ENST00000556303 RPRD2Q5VT52 1461 aaKnown RBP19.28■□□□□ 0.68
SNX6-207ENST00000556303 NOS1P29475 1434 aa19.26■□□□□ 0.67
SNX6-207ENST00000556303 CPS1P31327 1500 aa19.26■□□□□ 0.67
SNX6-207ENST00000556303 EFCAB6Q5THR3 1501 aa19.26■□□□□ 0.67
SNX6-207ENST00000556303 UBR1Q8IWV7 1749 aa19.26■□□□□ 0.67
SNX6-207ENST00000556303 SLIT1O75093 1534 aa19.25■□□□□ 0.67
SNX6-207ENST00000556303 ARHGAP23Q9P227 1491 aa19.25■□□□□ 0.67
SNX6-207ENST00000556303 EID1Q9Y6B2 187 aa19.25■□□□□ 0.67
SNX6-207ENST00000556303 KDM5AP29375 1690 aaKnown RBP19.24■□□□□ 0.67
SNX6-207ENST00000556303 IDI1Q13907 227 aa19.24■□□□□ 0.67
SNX6-207ENST00000556303 STAG3Q9UJ98 1225 aa19.24■□□□□ 0.67
SNX6-207ENST00000556303 SCAF11Q99590 1463 aaKnown RBP19.23■□□□□ 0.67
SNX6-207ENST00000556303 TXNDC2Q86VQ3 553 aa19.23■□□□□ 0.67
SNX6-207ENST00000556303 IQGAP1P46940 1657 aa19.22■□□□□ 0.67
SNX6-207ENST00000556303 TMEM2Q9UHN6 1383 aa19.21■□□□□ 0.67
SNX6-207ENST00000556303 LTKP29376 864 aa19.21■□□□□ 0.67
SNX6-207ENST00000556303 PPARGC1BQ86YN6 1023 aaKnown RBP19.21■□□□□ 0.67
SNX6-207ENST00000556303 RRBP1Q9P2E9 1410 aaKnown RBP19.21■□□□□ 0.67
SNX6-207ENST00000556303 UNC13BO14795 1591 aa19.2■□□□□ 0.66
SNX6-207ENST00000556303 PIK3C2BO00750 1634 aa19.19■□□□□ 0.66
SNX6-207ENST00000556303 TET3O43151 1660 aa19.19■□□□□ 0.66
SNX6-207ENST00000556303 UBAP1LF5GYI3 381 aa19.18■□□□□ 0.66
SNX6-207ENST00000556303 ITGAEP38570 1179 aa19.18■□□□□ 0.66
SNX6-207ENST00000556303 SYNMO15061 1565 aa19.18■□□□□ 0.66
SNX6-207ENST00000556303 TOM1O60784 492 aa19.16■□□□□ 0.66
SNX6-207ENST00000556303 GCC2Q8IWJ2 1684 aa19.15■□□□□ 0.66
SNX6-207ENST00000556303 HDGFP51858 240 aaKnown RBP19.15■□□□□ 0.66
SNX6-207ENST00000556303 NUP155O75694 1391 aa19.15■□□□□ 0.66
SNX6-207ENST00000556303 IQGAP3Q86VI3 1631 aa19.14■□□□□ 0.65
SNX6-207ENST00000556303 ADGRB3O60242 1522 aa19.13■□□□□ 0.65
SNX6-207ENST00000556303 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.08■□□□□ 0.64
SNX6-207ENST00000556303 LRRC7Q96NW7 1537 aa19.08■□□□□ 0.64
SNX6-207ENST00000556303 E9PCH4 1651 aa19.07■□□□□ 0.64
SNX6-207ENST00000556303 KCNA6P17658 529 aa19.06■□□□□ 0.64
SNX6-207ENST00000556303 ZFYVE9O95405 1425 aa19.06■□□□□ 0.64
SNX6-207ENST00000556303 NAIPQ13075 1403 aa19.06■□□□□ 0.64
SNX6-207ENST00000556303 TMEM131LA2VDJ0 1609 aa19.04■□□□□ 0.64
SNX6-207ENST00000556303 STRCP1A6NGW2 1772 aa19.04■□□□□ 0.64
SNX6-207ENST00000556303 PLEKHG1Q9ULL1 1385 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms