RNA–Protein interactions for RNA: ENST00000554592.5

ATXN3-228, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-228ENST00000554592 KCNV2Q8TDN2 545 aa9.59□□□□□ -0.87
ATXN3-228ENST00000554592 PCDHGA10Q9Y5H3 936 aa9.59□□□□□ -0.87
ATXN3-228ENST00000554592 SPDYE16A6NNV3 312 aaPredicted RBP9.57□□□□□ -0.88
ATXN3-228ENST00000554592 SMARCA2P51531 1590 aa9.56□□□□□ -0.88
ATXN3-228ENST00000554592 ARHGAP33O14559 1287 aa9.56□□□□□ -0.88
ATXN3-228ENST00000554592 BCL2L12Q9HB09 334 aa9.56□□□□□ -0.88
ATXN3-228ENST00000554592 PHF14O94880 888 aa9.55□□□□□ -0.88
ATXN3-228ENST00000554592 PSEN2P49810 448 aa9.55□□□□□ -0.88
ATXN3-228ENST00000554592 LSM11P83369 360 aaKnown RBP eCLIP9.55□□□□□ -0.88
ATXN3-228ENST00000554592 ARHGEF1Q92888 912 aaKnown RBP9.55□□□□□ -0.88
ATXN3-228ENST00000554592 ZDHHC16Q969W1 377 aa9.55□□□□□ -0.88
ATXN3-228ENST00000554592 ADAM33Q9BZ11 813 aa9.55□□□□□ -0.88
ATXN3-228ENST00000554592 HMGXB3Q12766 1538 aa9.55□□□□□ -0.88
ATXN3-228ENST00000554592 DMRTA1Q5VZB9 504 aa9.54□□□□□ -0.88
ATXN3-228ENST00000554592 PDS5BQ9NTI5 1447 aa9.53□□□□□ -0.88
ATXN3-228ENST00000554592 DDX12PQ92771 950 aa9.52□□□□□ -0.89
ATXN3-228ENST00000554592 BAZ1BQ9UIG0 1483 aaKnown RBP9.52□□□□□ -0.89
ATXN3-228ENST00000554592 TYW1BQ6NUM6 668 aa9.51□□□□□ -0.89
ATXN3-228ENST00000554592 ANKRD13DQ6ZTN6 518 aa9.51□□□□□ -0.89
ATXN3-228ENST00000554592 PRIM1P49642 420 aaKnown RBP9.5□□□□□ -0.89
ATXN3-228ENST00000554592 FBXW7Q969H0 707 aa9.5□□□□□ -0.89
ATXN3-228ENST00000554592 KCNK17Q96T54 332 aa9.5□□□□□ -0.89
ATXN3-228ENST00000554592 EPAS1Q99814 870 aa9.5□□□□□ -0.89
ATXN3-228ENST00000554592 PTPREP23469 700 aa9.48□□□□□ -0.89
ATXN3-228ENST00000554592 THOC2Q8NI27 1593 aaKnown RBP9.47□□□□□ -0.89
ATXN3-228ENST00000554592 LAMC3Q9Y6N6 1575 aa9.47□□□□□ -0.89
ATXN3-228ENST00000554592 SMARCA4P51532 1647 aa9.47□□□□□ -0.89
ATXN3-228ENST00000554592 TK2O00142 265 aa9.47□□□□□ -0.89
ATXN3-228ENST00000554592 HRO43593 1189 aa9.47□□□□□ -0.89
ATXN3-228ENST00000554592 ADGRD1Q6QNK2 874 aa9.47□□□□□ -0.89
ATXN3-228ENST00000554592 P3H3Q8IVL6 736 aa9.47□□□□□ -0.89
ATXN3-228ENST00000554592 COL9A1P20849 921 aa9.46□□□□□ -0.9
ATXN3-228ENST00000554592 OSBPP22059 807 aa9.46□□□□□ -0.9
ATXN3-228ENST00000554592 RNF166Q96A37 237 aaPredicted RBP9.46□□□□□ -0.9
ATXN3-228ENST00000554592 SLC4A5Q9BY07 1137 aa9.46□□□□□ -0.9
ATXN3-228ENST00000554592 CADPSQ9ULU8 1353 aa9.46□□□□□ -0.9
ATXN3-228ENST00000554592 EN1Q05925 392 aaPredicted RBP9.45□□□□□ -0.9
ATXN3-228ENST00000554592 C6orf132Q5T0Z8 1188 aa9.45□□□□□ -0.9
ATXN3-228ENST00000554592 ZBED2Q9BTP6 218 aa9.45□□□□□ -0.9
ATXN3-228ENST00000554592 GRXCR2A6NFK2 248 aa9.44□□□□□ -0.9
ATXN3-228ENST00000554592 MLLT3P42568 568 aaPredicted RBP9.44□□□□□ -0.9
ATXN3-228ENST00000554592 NBR1Q14596 966 aa9.44□□□□□ -0.9
ATXN3-228ENST00000554592 VPS9D1Q9Y2B5 631 aa9.44□□□□□ -0.9
ATXN3-228ENST00000554592 BAZ1AQ9NRL2 1556 aaPredicted RBP9.44□□□□□ -0.9
ATXN3-228ENST00000554592 PPP1R3GB7ZBB8 358 aa9.43□□□□□ -0.9
ATXN3-228ENST00000554592 TSR1Q2NL82 804 aaKnown RBP9.42□□□□□ -0.9
ATXN3-228ENST00000554592 RBM33Q96EV2 1170 aaKnown RBP9.42□□□□□ -0.9
ATXN3-228ENST00000554592 MYT1LQ9UL68 1186 aa9.42□□□□□ -0.9
ATXN3-228ENST00000554592 BHMG1C9JSJ3 638 aaPredicted RBP9.41□□□□□ -0.9
ATXN3-228ENST00000554592 KCNH8Q96L42 1107 aa9.41□□□□□ -0.9
ATXN3-228ENST00000554592 PEG3Q9GZU2 1588 aa9.41□□□□□ -0.9
ATXN3-228ENST00000554592 SEMA3EO15041 775 aa9.4□□□□□ -0.9
ATXN3-228ENST00000554592 BCANQ96GW7 911 aa9.4□□□□□ -0.9
ATXN3-228ENST00000554592 MRC2Q9UBG0 1479 aa9.4□□□□□ -0.91
ATXN3-228ENST00000554592 MAP3K7O43318 606 aa9.37□□□□□ -0.91
ATXN3-228ENST00000554592 PROX2Q3B8N5 592 aa9.37□□□□□ -0.91
ATXN3-228ENST00000554592 CDHR5Q9HBB8 845 aa9.36□□□□□ -0.91
ATXN3-228ENST00000554592 TESPA1A2RU30 521 aaPredicted RBP9.35□□□□□ -0.91
ATXN3-228ENST00000554592 MROH2BQ7Z745 1585 aa9.35□□□□□ -0.91
ATXN3-228ENST00000554592 NPDC1Q9NQX5 325 aaPredicted RBP9.35□□□□□ -0.91
ATXN3-228ENST00000554592 WDR62O43379 1518 aa9.35□□□□□ -0.91
ATXN3-228ENST00000554592 ONECUT3O60422 494 aaPredicted RBP9.34□□□□□ -0.91
ATXN3-228ENST00000554592 KIF21AQ7Z4S6 1674 aa9.34□□□□□ -0.91
ATXN3-228ENST00000554592 RABGEF1Q9UJ41 708 aa9.33□□□□□ -0.92
ATXN3-228ENST00000554592 TRIM6-TRIM34B2RNG4 842 aa9.32□□□□□ -0.92
ATXN3-228ENST00000554592 TSKSQ9UJT2 592 aa9.32□□□□□ -0.92
ATXN3-228ENST00000554592 FAM198AQ9UFP1 575 aa9.31□□□□□ -0.92
ATXN3-228ENST00000554592 CEP164Q9UPV0 1460 aa9.3□□□□□ -0.92
ATXN3-228ENST00000554592 CERKQ8TCT0 537 aa9.3□□□□□ -0.92
ATXN3-228ENST00000554592 KIAA1468Q9P260 1216 aa9.3□□□□□ -0.92
ATXN3-228ENST00000554592 PRSS12P56730 875 aa9.29□□□□□ -0.92
ATXN3-228ENST00000554592 CDCA7LQ96GN5 454 aa9.29□□□□□ -0.92
ATXN3-228ENST00000554592 FANCD2Q9BXW9 1451 aa9.28□□□□□ -0.92
ATXN3-228ENST00000554592 C3orf80F5H4A9 247 aa9.28□□□□□ -0.92
ATXN3-228ENST00000554592 TTC13Q8NBP0 860 aa9.28□□□□□ -0.92
ATXN3-228ENST00000554592 PTGDRQ13258 359 aa9.26□□□□□ -0.93
ATXN3-228ENST00000554592 RBM26Q5T8P6 1007 aaKnown RBP9.26□□□□□ -0.93
ATXN3-228ENST00000554592 CYB5RLQ6IPT4 315 aa9.26□□□□□ -0.93
ATXN3-228ENST00000554592 MRPL50Q8N5N7 158 aaKnown RBP9.26□□□□□ -0.93
ATXN3-228ENST00000554592 NBPF3Q9H094 633 aa9.26□□□□□ -0.93
ATXN3-228ENST00000554592 RBM27Q9P2N5 1060 aaKnown RBP9.26□□□□□ -0.93
ATXN3-228ENST00000554592 CFTRP13569 1480 aa9.25□□□□□ -0.93
ATXN3-228ENST00000554592 LAPTM4BQ86VI4 370 aa9.24□□□□□ -0.93
ATXN3-228ENST00000554592 STAC3Q96MF2 364 aa9.24□□□□□ -0.93
ATXN3-228ENST00000554592 KCTD12Q96CX2 325 aaKnown RBP9.23□□□□□ -0.93
ATXN3-228ENST00000554592 SMYD5Q6GMV2 418 aa9.22□□□□□ -0.93
ATXN3-228ENST00000554592 PADI6Q6TGC4 694 aa9.22□□□□□ -0.93
ATXN3-228ENST00000554592 PACS2Q86VP3 889 aa9.22□□□□□ -0.93
ATXN3-228ENST00000554592 SEPT9Q9UHD8 586 aaPredicted RBP9.22□□□□□ -0.93
ATXN3-228ENST00000554592 GPR37O15354 613 aa9.21□□□□□ -0.94
ATXN3-228ENST00000554592 URB2Q14146 1524 aaKnown RBP9.21□□□□□ -0.94
ATXN3-228ENST00000554592 NUTM2FA1L443 756 aa9.2□□□□□ -0.94
ATXN3-228ENST00000554592 PRKCSHP14314 528 aaPredicted RBP9.2□□□□□ -0.94
ATXN3-228ENST00000554592 FAM98CQ17RN3 349 aaKnown RBP9.2□□□□□ -0.94
ATXN3-228ENST00000554592 THSD4Q6ZMP0 1018 aa9.2□□□□□ -0.94
ATXN3-228ENST00000554592 TATDN2Q93075 761 aa9.2□□□□□ -0.94
ATXN3-228ENST00000554592 WNT2BQ93097 391 aa9.2□□□□□ -0.94
ATXN3-228ENST00000554592 ZFRQ96KR1 1074 aaKnown RBP9.2□□□□□ -0.94
ATXN3-228ENST00000554592 SMAPO00193 183 aa9.19□□□□□ -0.94
ATXN3-228ENST00000554592 HCSTQ9UBK5 93 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms