RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 BECN1Q14457 450 aa12.24□□□□□ -0.45
SIX4-202ENST00000554079 TRIM44Q96DX7 344 aaPredicted RBP12.24□□□□□ -0.45
SIX4-202ENST00000554079 GZF1Q9H116 711 aaPredicted RBP12.24□□□□□ -0.45
SIX4-202ENST00000554079 PRDM2Q13029 1718 aa12.23□□□□□ -0.45
SIX4-202ENST00000554079 ZNF830Q96NB3 372 aaPredicted RBP12.23□□□□□ -0.45
SIX4-202ENST00000554079 GCC2Q8IWJ2 1684 aa12.23□□□□□ -0.45
SIX4-202ENST00000554079 PCF11O94913 1555 aaKnown RBP12.23□□□□□ -0.45
SIX4-202ENST00000554079 FOXD1Q16676 465 aa12.23□□□□□ -0.45
SIX4-202ENST00000554079 PLIN1O60240 522 aa12.22□□□□□ -0.45
SIX4-202ENST00000554079 PDE3BQ13370 1112 aa12.21□□□□□ -0.45
SIX4-202ENST00000554079 NAIPQ13075 1403 aa12.21□□□□□ -0.45
SIX4-202ENST00000554079 TRAK2O60296 914 aa12.21□□□□□ -0.46
SIX4-202ENST00000554079 KIF20AO95235 890 aa12.2□□□□□ -0.46
SIX4-202ENST00000554079 PTPRKQ15262 1439 aa12.2□□□□□ -0.46
SIX4-202ENST00000554079 ZSCAN30Q86W11 494 aa12.2□□□□□ -0.46
SIX4-202ENST00000554079 E9PCH4 1651 aa12.2□□□□□ -0.46
SIX4-202ENST00000554079 CUX1P39880 1505 aa12.19□□□□□ -0.46
SIX4-202ENST00000554079 CCDC94Q9BW85 323 aaPredicted RBP12.19□□□□□ -0.46
SIX4-202ENST00000554079 WDR62O43379 1518 aa12.19□□□□□ -0.46
SIX4-202ENST00000554079 BRD4O60885 1362 aaPredicted RBP12.18□□□□□ -0.46
SIX4-202ENST00000554079 PPP1R9BQ96SB3 815 aa12.18□□□□□ -0.46
SIX4-202ENST00000554079 GTPBP4Q9BZE4 634 aaKnown RBP12.18□□□□□ -0.46
SIX4-202ENST00000554079 FMN1Q68DA7 1419 aa12.18□□□□□ -0.46
SIX4-202ENST00000554079 UQCRHLA0A096LP55 91 aa12.18□□□□□ -0.46
SIX4-202ENST00000554079 DYNC1I1O14576 645 aa12.18□□□□□ -0.46
SIX4-202ENST00000554079 UQCRHP07919 91 aa12.18□□□□□ -0.46
SIX4-202ENST00000554079 MIA2Q96PC5 1412 aa12.17□□□□□ -0.46
SIX4-202ENST00000554079 ANP32BQ92688 251 aaKnown RBP12.17□□□□□ -0.46
SIX4-202ENST00000554079 R3HCC1Q9Y3T6 440 aaKnown RBP12.17□□□□□ -0.46
SIX4-202ENST00000554079 TEX14Q8IWB6 1497 aa12.17□□□□□ -0.46
SIX4-202ENST00000554079 FGD6Q6ZV73 1430 aa12.17□□□□□ -0.46
SIX4-202ENST00000554079 LETM1O95202 739 aaPredicted RBP12.16□□□□□ -0.46
SIX4-202ENST00000554079 CCDC173Q0VFZ6 552 aa12.16□□□□□ -0.46
SIX4-202ENST00000554079 C20orf194Q5TEA3 1177 aa12.16□□□□□ -0.46
SIX4-202ENST00000554079 GAS2L3Q86XJ1 694 aa12.16□□□□□ -0.46
SIX4-202ENST00000554079 FTSJ3Q8IY81 847 aaKnown RBP12.16□□□□□ -0.46
SIX4-202ENST00000554079 TMC1Q8TDI8 760 aa12.16□□□□□ -0.46
SIX4-202ENST00000554079 ROCK2O75116 1388 aaKnown RBP12.16□□□□□ -0.46
SIX4-202ENST00000554079 VGLL3A8MV65 326 aa12.15□□□□□ -0.46
SIX4-202ENST00000554079 SEC24BO95487 1268 aa12.15□□□□□ -0.46
SIX4-202ENST00000554079 ARID3AQ99856 593 aa12.15□□□□□ -0.47
SIX4-202ENST00000554079 TBC1D2Q9BYX2 928 aa12.15□□□□□ -0.47
SIX4-202ENST00000554079 TNNT2P45379 298 aaPredicted RBP12.14□□□□□ -0.47
SIX4-202ENST00000554079 CDCA7LQ96GN5 454 aa12.14□□□□□ -0.47
SIX4-202ENST00000554079 NBPF8Q3BBV2 869 aa12.13□□□□□ -0.47
SIX4-202ENST00000554079 L3MBTL2Q969R5 705 aa12.13□□□□□ -0.47
SIX4-202ENST00000554079 KDM5CP41229 1560 aa12.13□□□□□ -0.47
SIX4-202ENST00000554079 PLCD3Q8N3E9 789 aa12.13□□□□□ -0.47
SIX4-202ENST00000554079 URB2Q14146 1524 aaKnown RBP12.12□□□□□ -0.47
SIX4-202ENST00000554079 ZNF500O60304 480 aaPredicted RBP12.12□□□□□ -0.47
SIX4-202ENST00000554079 ZMYM4Q5VZL5 1548 aa12.12□□□□□ -0.47
SIX4-202ENST00000554079 DDX11L8A8MPP1 907 aa12.11□□□□□ -0.47
SIX4-202ENST00000554079 CHRM1P11229 460 aaPredicted RBP12.11□□□□□ -0.47
SIX4-202ENST00000554079 MSNP26038 577 aaKnown RBP12.11□□□□□ -0.47
SIX4-202ENST00000554079 KDM6BO15054 1643 aa12.11□□□□□ -0.47
SIX4-202ENST00000554079 PLEKHH2Q8IVE3 1493 aa12.1□□□□□ -0.47
SIX4-202ENST00000554079 ZFP91Q96JP5 570 aaPredicted RBP12.1□□□□□ -0.47
SIX4-202ENST00000554079 CHMP5Q9NZZ3 219 aa12.1□□□□□ -0.47
SIX4-202ENST00000554079 BLMP54132 1417 aaPredicted RBP12.1□□□□□ -0.47
SIX4-202ENST00000554079 SCAPERQ9BY12 1400 aa12.1□□□□□ -0.47
SIX4-202ENST00000554079 MYBBP1AQ9BQG0 1328 aaKnown RBP12.1□□□□□ -0.47
SIX4-202ENST00000554079 KIF15Q9NS87 1388 aa12.1□□□□□ -0.47
SIX4-202ENST00000554079 VGFO15240 615 aaPredicted RBP12.1□□□□□ -0.47
SIX4-202ENST00000554079 TAF3Q5VWG9 929 aa12.1□□□□□ -0.47
SIX4-202ENST00000554079 TEX2Q8IWB9 1127 aa12.1□□□□□ -0.47
SIX4-202ENST00000554079 RPRD2Q5VT52 1461 aaKnown RBP12.09□□□□□ -0.47
SIX4-202ENST00000554079 CCDC144AA2RUR9 1427 aa12.08□□□□□ -0.48
SIX4-202ENST00000554079 HS1BP3Q53T59 392 aa12.08□□□□□ -0.48
SIX4-202ENST00000554079 TBC1D32Q96NH3 1257 aa12.08□□□□□ -0.48
SIX4-202ENST00000554079 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.08□□□□□ -0.48
SIX4-202ENST00000554079 INSRP06213 1382 aa12.08□□□□□ -0.48
SIX4-202ENST00000554079 KIF14Q15058 1648 aa12.08□□□□□ -0.48
SIX4-202ENST00000554079 SASS6Q6UVJ0 657 aa12.08□□□□□ -0.48
SIX4-202ENST00000554079 ZNF692Q9BU19 519 aaPredicted RBP12.08□□□□□ -0.48
SIX4-202ENST00000554079 RTEL1-TNFRSF6BF6WH68 1400 aa12.07□□□□□ -0.48
SIX4-202ENST00000554079 TOPBP1Q92547 1522 aa12.07□□□□□ -0.48
SIX4-202ENST00000554079 FYCO1Q9BQS8 1478 aa12.07□□□□□ -0.48
SIX4-202ENST00000554079 NCOA3Q9Y6Q9 1424 aa12.06□□□□□ -0.48
SIX4-202ENST00000554079 DNMBPQ6XZF7 1577 aa12.06□□□□□ -0.48
SIX4-202ENST00000554079 NOL7Q9UMY1 257 aaKnown RBP12.06□□□□□ -0.48
SIX4-202ENST00000554079 EIF3AQ14152 1382 aaKnown RBP12.06□□□□□ -0.48
SIX4-202ENST00000554079 XPCQ01831 940 aaPredicted RBP12.05□□□□□ -0.48
SIX4-202ENST00000554079 MBD5Q9P267 1494 aa12.05□□□□□ -0.48
SIX4-202ENST00000554079 ZBTB22O15209 634 aa12.04□□□□□ -0.48
SIX4-202ENST00000554079 NASPP49321 788 aaPredicted RBP12.04□□□□□ -0.48
SIX4-202ENST00000554079 KIF27Q86VH2 1401 aa12.04□□□□□ -0.48
SIX4-202ENST00000554079 CSPP1Q1MSJ5 1256 aa12.04□□□□□ -0.48
SIX4-202ENST00000554079 MAPK8IP3Q9UPT6 1336 aa12.03□□□□□ -0.48
SIX4-202ENST00000554079 IBTKQ9P2D0 1353 aaPredicted RBP12.03□□□□□ -0.48
SIX4-202ENST00000554079 BRD2P25440 801 aaKnown RBP12.03□□□□□ -0.48
SIX4-202ENST00000554079 DDIT3P35638 169 aa12.03□□□□□ -0.48
SIX4-202ENST00000554079 CBX1P83916 185 aa12.03□□□□□ -0.48
SIX4-202ENST00000554079 RALBP1Q15311 655 aa12.03□□□□□ -0.48
SIX4-202ENST00000554079 ZNF710Q8N1W2 664 aa12.03□□□□□ -0.48
SIX4-202ENST00000554079 SPRYD3Q8NCJ5 442 aa12.03□□□□□ -0.48
SIX4-202ENST00000554079 LRRIQ1Q96JM4 1722 aa12.03□□□□□ -0.48
SIX4-202ENST00000554079 ZMYM3Q14202 1370 aa12.02□□□□□ -0.49
SIX4-202ENST00000554079 ATP2B3Q16720 1220 aa12.02□□□□□ -0.49
SIX4-202ENST00000554079 SECISBP2LQ93073 1101 aaKnown RBP12.02□□□□□ -0.49
SIX4-202ENST00000554079 PANK3Q9H999 370 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms