RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 MIA2Q96PC5 1412 aa12.84□□□□□ -0.35
PSEN1-209ENST00000553855 CAMSAP2Q08AD1 1489 aa12.83□□□□□ -0.36
PSEN1-209ENST00000553855 CCDC141Q6ZP82 1450 aa12.81□□□□□ -0.36
PSEN1-209ENST00000553855 IFNLR1Q8IU57 520 aaPredicted RBP12.8□□□□□ -0.36
PSEN1-209ENST00000553855 SPDYE2BA6NHP3 402 aa12.79□□□□□ -0.36
PSEN1-209ENST00000553855 SPDYE6P0CI01 402 aa12.79□□□□□ -0.36
PSEN1-209ENST00000553855 SPDYE2Q495Y8 402 aa12.79□□□□□ -0.36
PSEN1-209ENST00000553855 RTEL1-TNFRSF6BF6WH68 1400 aa12.79□□□□□ -0.36
PSEN1-209ENST00000553855 MBD5Q9P267 1494 aa12.78□□□□□ -0.36
PSEN1-209ENST00000553855 ATP7AQ04656 1500 aa12.78□□□□□ -0.36
PSEN1-209ENST00000553855 DIP2CQ9Y2E4 1556 aa12.77□□□□□ -0.36
PSEN1-209ENST00000553855 FAM50AQ14320 339 aaKnown RBP12.77□□□□□ -0.37
PSEN1-209ENST00000553855 FGD6Q6ZV73 1430 aa12.77□□□□□ -0.37
PSEN1-209ENST00000553855 ZNF692Q9BU19 519 aaPredicted RBP12.76□□□□□ -0.37
PSEN1-209ENST00000553855 ARHGEF5Q12774 1597 aa12.76□□□□□ -0.37
PSEN1-209ENST00000553855 REREQ9P2R6 1566 aa12.76□□□□□ -0.37
PSEN1-209ENST00000553855 BCORL1Q5H9F3 1711 aa12.76□□□□□ -0.37
PSEN1-209ENST00000553855 A2MP01023 1474 aa12.75□□□□□ -0.37
PSEN1-209ENST00000553855 ABCA6Q8N139 1617 aa12.75□□□□□ -0.37
PSEN1-209ENST00000553855 KIDINS220Q9ULH0 1771 aa12.74□□□□□ -0.37
PSEN1-209ENST00000553855 PPARGC1BQ86YN6 1023 aaKnown RBP12.74□□□□□ -0.37
PSEN1-209ENST00000553855 PTPN23Q9H3S7 1636 aa12.73□□□□□ -0.37
PSEN1-209ENST00000553855 INO80Q9ULG1 1556 aaPredicted RBP12.73□□□□□ -0.37
PSEN1-209ENST00000553855 AGLP35573 1532 aa12.73□□□□□ -0.37
PSEN1-209ENST00000553855 GGT6Q6P531 493 aa12.73□□□□□ -0.37
PSEN1-209ENST00000553855 ADAMTSL3P82987 1691 aa12.73□□□□□ -0.37
PSEN1-209ENST00000553855 PTPRMP28827 1452 aa12.72□□□□□ -0.37
PSEN1-209ENST00000553855 DHX29Q7Z478 1369 aaKnown RBP12.72□□□□□ -0.37
PSEN1-209ENST00000553855 PLCB2Q00722 1185 aa12.72□□□□□ -0.37
PSEN1-209ENST00000553855 AKT1S1Q96B36 256 aa12.72□□□□□ -0.37
PSEN1-209ENST00000553855 MADDQ8WXG6 1647 aa12.71□□□□□ -0.37
PSEN1-209ENST00000553855 TCOF1Q13428 1488 aaKnown RBP12.71□□□□□ -0.38
PSEN1-209ENST00000553855 ADGBQ8N7X0 1667 aa12.7□□□□□ -0.38
PSEN1-209ENST00000553855 KIF3BO15066 747 aa12.7□□□□□ -0.38
PSEN1-209ENST00000553855 CNTLNQ9NXG0 1405 aa12.7□□□□□ -0.38
PSEN1-209ENST00000553855 FBXO41Q8TF61 875 aa12.69□□□□□ -0.38
PSEN1-209ENST00000553855 RIMS1Q86UR5 1692 aaKnown RBP12.69□□□□□ -0.38
PSEN1-209ENST00000553855 DAPK1P53355 1430 aa12.69□□□□□ -0.38
PSEN1-209ENST00000553855 ANKRD30AQ9BXX3 1397 aa12.69□□□□□ -0.38
PSEN1-209ENST00000553855 SHANK2Q9UPX8 1470 aa12.68□□□□□ -0.38
PSEN1-209ENST00000553855 CHIC2Q9UKJ5 165 aa12.68□□□□□ -0.38
PSEN1-209ENST00000553855 ABCC5O15440 1437 aa12.68□□□□□ -0.38
PSEN1-209ENST00000553855 MAST1Q9Y2H9 1570 aa12.68□□□□□ -0.38
PSEN1-209ENST00000553855 FER1L4A9Z1Z3 1794 aa12.67□□□□□ -0.38
PSEN1-209ENST00000553855 RRP7BPQ9NSQ0 103 aa12.67□□□□□ -0.38
PSEN1-209ENST00000553855 KIF15Q9NS87 1388 aa12.66□□□□□ -0.38
PSEN1-209ENST00000553855 SIGLEC1Q9BZZ2 1709 aa12.65□□□□□ -0.38
PSEN1-209ENST00000553855 PLXNC1O60486 1568 aa12.65□□□□□ -0.38
PSEN1-209ENST00000553855 DNMT1P26358 1616 aaKnown RBP12.65□□□□□ -0.38
PSEN1-209ENST00000553855 WASHC2CQ9Y4E1 1318 aa12.64□□□□□ -0.39
PSEN1-209ENST00000553855 DUOX2Q9NRD8 1548 aa12.64□□□□□ -0.39
PSEN1-209ENST00000553855 ITGAEP38570 1179 aa12.64□□□□□ -0.39
PSEN1-209ENST00000553855 CEBPAP49715 358 aaPredicted RBP12.64□□□□□ -0.39
PSEN1-209ENST00000553855 PKD2Q13563 968 aa12.64□□□□□ -0.39
PSEN1-209ENST00000553855 LMTK3Q96Q04 1460 aa12.64□□□□□ -0.39
PSEN1-209ENST00000553855 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.62□□□□□ -0.39
PSEN1-209ENST00000553855 ZMYM3Q14202 1370 aa12.61□□□□□ -0.39
PSEN1-209ENST00000553855 KANK1Q14678 1352 aa12.61□□□□□ -0.39
PSEN1-209ENST00000553855 ERBINQ96RT1 1412 aa12.61□□□□□ -0.39
PSEN1-209ENST00000553855 CROCC2H7BZ55 1655 aa12.61□□□□□ -0.39
PSEN1-209ENST00000553855 SSUH2Q9Y2M2 353 aa12.6□□□□□ -0.39
PSEN1-209ENST00000553855 FAM135AQ9P2D6 1515 aa12.59□□□□□ -0.39
PSEN1-209ENST00000553855 REM2Q8IYK8 340 aaPredicted RBP12.59□□□□□ -0.39
PSEN1-209ENST00000553855 NCOA1Q15788 1441 aa12.59□□□□□ -0.39
PSEN1-209ENST00000553855 UHRF1BP1Q6BDS2 1440 aa12.59□□□□□ -0.39
PSEN1-209ENST00000553855 EIF2AK4Q9P2K8 1649 aaKnown RBP12.59□□□□□ -0.39
PSEN1-209ENST00000553855 ADGRL2O95490 1459 aa12.58□□□□□ -0.4
PSEN1-209ENST00000553855 KDM5DQ9BY66 1539 aa12.57□□□□□ -0.4
PSEN1-209ENST00000553855 SOCS7O14512 581 aa12.57□□□□□ -0.4
PSEN1-209ENST00000553855 MROH2AA6NES4 1674 aa12.57□□□□□ -0.4
PSEN1-209ENST00000553855 ROCK1Q13464 1354 aa12.56□□□□□ -0.4
PSEN1-209ENST00000553855 NPATQ14207 1427 aa12.56□□□□□ -0.4
PSEN1-209ENST00000553855 RRBP1Q9P2E9 1410 aaKnown RBP12.56□□□□□ -0.4
PSEN1-209ENST00000553855 CLTCQ00610 1675 aaKnown RBP12.56□□□□□ -0.4
PSEN1-209ENST00000553855 ANKRD50Q9ULJ7 1429 aa12.55□□□□□ -0.4
PSEN1-209ENST00000553855 C3P01024 1663 aa12.54□□□□□ -0.4
PSEN1-209ENST00000553855 RNF17Q9BXT8 1623 aaKnown RBP12.53□□□□□ -0.4
PSEN1-209ENST00000553855 HAP1P54257 671 aaPredicted RBP12.53□□□□□ -0.4
PSEN1-209ENST00000553855 KLHL34Q8N239 644 aa12.53□□□□□ -0.4
PSEN1-209ENST00000553855 SPOCK2Q92563 424 aa12.53□□□□□ -0.4
PSEN1-209ENST00000553855 STAG3Q9UJ98 1225 aa12.53□□□□□ -0.4
PSEN1-209ENST00000553855 HSPA2P54652 639 aa12.52□□□□□ -0.41
PSEN1-209ENST00000553855 PREX1Q8TCU6 1659 aa12.51□□□□□ -0.41
PSEN1-209ENST00000553855 TNRQ92752 1358 aa12.51□□□□□ -0.41
PSEN1-209ENST00000553855 PTPRKQ15262 1439 aa12.51□□□□□ -0.41
PSEN1-209ENST00000553855 PZPP20742 1482 aa12.51□□□□□ -0.41
PSEN1-209ENST00000553855 ZC3H13Q5T200 1668 aaKnown RBP12.51□□□□□ -0.41
PSEN1-209ENST00000553855 ABCC3O15438 1527 aa12.5□□□□□ -0.41
PSEN1-209ENST00000553855 SETD1BQ9UPS6 1966 aaKnown RBP12.5□□□□□ -0.41
PSEN1-209ENST00000553855 FBXO31Q5XUX0 539 aaPredicted RBP12.49□□□□□ -0.41
PSEN1-209ENST00000553855 PRDM15P57071 1507 aaPredicted RBP12.48□□□□□ -0.41
PSEN1-209ENST00000553855 SPDYE1Q8NFV5 336 aaPredicted RBP12.47□□□□□ -0.41
PSEN1-209ENST00000553855 CLEC11AQ9Y240 323 aa12.47□□□□□ -0.41
PSEN1-209ENST00000553855 ARHGAP31Q2M1Z3 1444 aa12.45□□□□□ -0.42
PSEN1-209ENST00000553855 NUP155O75694 1391 aa12.45□□□□□ -0.42
PSEN1-209ENST00000553855 DEPDC5O75140 1603 aa12.45□□□□□ -0.42
PSEN1-209ENST00000553855 MROH1Q8NDA8 1641 aa12.45□□□□□ -0.42
PSEN1-209ENST00000553855 THEMISQ8N1K5 641 aaPredicted RBP12.45□□□□□ -0.42
PSEN1-209ENST00000553855 NLRP1Q9C000 1473 aa12.45□□□□□ -0.42
PSEN1-209ENST00000553855 CAMSAP1Q5T5Y3 1602 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms