RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 MYOM3Q5VTT5 1437 aa20■□□□□ 0.79
LINC00643-202ENST00000553426 MIA2Q96PC5 1412 aa20■□□□□ 0.79
LINC00643-202ENST00000553426 WASHC2CQ9Y4E1 1318 aa20■□□□□ 0.79
LINC00643-202ENST00000553426 CAMSAP1Q5T5Y3 1602 aa19.98■□□□□ 0.79
LINC00643-202ENST00000553426 FAM135AQ9P2D6 1515 aa19.97■□□□□ 0.79
LINC00643-202ENST00000553426 PKD2Q13563 968 aa19.95■□□□□ 0.78
LINC00643-202ENST00000553426 MYO3AQ8NEV4 1616 aa19.94■□□□□ 0.78
LINC00643-202ENST00000553426 KDM5DQ9BY66 1539 aa19.94■□□□□ 0.78
LINC00643-202ENST00000553426 CEP170BQ9Y4F5 1589 aaPredicted RBP19.94■□□□□ 0.78
LINC00643-202ENST00000553426 MAST1Q9Y2H9 1570 aa19.92■□□□□ 0.78
LINC00643-202ENST00000553426 ZNF142P52746 1687 aaPredicted RBP19.92■□□□□ 0.78
LINC00643-202ENST00000553426 NCKAP5LQ9HCH0 1330 aa19.92■□□□□ 0.78
LINC00643-202ENST00000553426 PLA2R1Q13018 1463 aa19.92■□□□□ 0.78
LINC00643-202ENST00000553426 TNRQ92752 1358 aa19.91■□□□□ 0.78
LINC00643-202ENST00000553426 PZPP20742 1482 aa19.91■□□□□ 0.78
LINC00643-202ENST00000553426 FBXO31Q5XUX0 539 aaPredicted RBP19.9■□□□□ 0.78
LINC00643-202ENST00000553426 A2ML1A8K2U0 1454 aa19.9■□□□□ 0.78
LINC00643-202ENST00000553426 IQSEC2Q5JU85 1478 aa19.89■□□□□ 0.77
LINC00643-202ENST00000553426 TCOF1Q13428 1488 aaKnown RBP19.85■□□□□ 0.77
LINC00643-202ENST00000553426 EIF2AK4Q9P2K8 1649 aaKnown RBP19.84■□□□□ 0.77
LINC00643-202ENST00000553426 THEMISQ8N1K5 641 aaPredicted RBP19.84■□□□□ 0.77
LINC00643-202ENST00000553426 DUOX2Q9NRD8 1548 aa19.84■□□□□ 0.77
LINC00643-202ENST00000553426 RNF17Q9BXT8 1623 aaKnown RBP19.84■□□□□ 0.77
LINC00643-202ENST00000553426 PTPN23Q9H3S7 1636 aa19.84■□□□□ 0.77
LINC00643-202ENST00000553426 ZNF335Q9H4Z2 1342 aaPredicted RBP19.83■□□□□ 0.77
LINC00643-202ENST00000553426 DNMT1P26358 1616 aaKnown RBP19.83■□□□□ 0.76
LINC00643-202ENST00000553426 KIF15Q9NS87 1388 aa19.83■□□□□ 0.76
LINC00643-202ENST00000553426 NLRP1Q9C000 1473 aa19.82■□□□□ 0.76
LINC00643-202ENST00000553426 SHANK2Q9UPX8 1470 aa19.82■□□□□ 0.76
LINC00643-202ENST00000553426 FGD6Q6ZV73 1430 aa19.82■□□□□ 0.76
LINC00643-202ENST00000553426 RRP7BPQ9NSQ0 103 aa19.81■□□□□ 0.76
LINC00643-202ENST00000553426 ABCC5O15440 1437 aa19.81■□□□□ 0.76
LINC00643-202ENST00000553426 ZC3H13Q5T200 1668 aaKnown RBP19.81■□□□□ 0.76
LINC00643-202ENST00000553426 ANKLE2Q86XL3 938 aa19.8■□□□□ 0.76
LINC00643-202ENST00000553426 ABCC3O15438 1527 aa19.8■□□□□ 0.76
LINC00643-202ENST00000553426 DAPK1P53355 1430 aa19.78■□□□□ 0.76
LINC00643-202ENST00000553426 ERBINQ96RT1 1412 aa19.78■□□□□ 0.76
LINC00643-202ENST00000553426 UBAP1LF5GYI3 381 aa19.78■□□□□ 0.76
LINC00643-202ENST00000553426 UGGT1Q9NYU2 1555 aa19.77■□□□□ 0.76
LINC00643-202ENST00000553426 ANKRD30AQ9BXX3 1397 aa19.76■□□□□ 0.75
LINC00643-202ENST00000553426 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.76■□□□□ 0.75
LINC00643-202ENST00000553426 CROCC2H7BZ55 1655 aa19.75■□□□□ 0.75
LINC00643-202ENST00000553426 KANK1Q14678 1352 aa19.75■□□□□ 0.75
LINC00643-202ENST00000553426 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.75■□□□□ 0.75
LINC00643-202ENST00000553426 CHIC2Q9UKJ5 165 aa19.75■□□□□ 0.75
LINC00643-202ENST00000553426 FAM50AQ14320 339 aaKnown RBP19.73■□□□□ 0.75
LINC00643-202ENST00000553426 ERVK-7P63135 1459 aa19.73■□□□□ 0.75
LINC00643-202ENST00000553426 MROH1Q8NDA8 1641 aa19.73■□□□□ 0.75
LINC00643-202ENST00000553426 POLR1AO95602 1720 aaPredicted RBP19.72■□□□□ 0.75
LINC00643-202ENST00000553426 CEP152O94986 1710 aa19.7■□□□□ 0.74
LINC00643-202ENST00000553426 PRDM15P57071 1507 aaPredicted RBP19.7■□□□□ 0.74
LINC00643-202ENST00000553426 ARHGAP31Q2M1Z3 1444 aa19.68■□□□□ 0.74
LINC00643-202ENST00000553426 NEURL4Q96JN8 1562 aa19.68■□□□□ 0.74
LINC00643-202ENST00000553426 NPHP4O75161 1426 aaPredicted RBP19.68■□□□□ 0.74
LINC00643-202ENST00000553426 MED14O60244 1454 aa19.66■□□□□ 0.74
LINC00643-202ENST00000553426 CPS1P31327 1500 aa19.66■□□□□ 0.74
LINC00643-202ENST00000553426 DEPDC5O75140 1603 aa19.65■□□□□ 0.74
LINC00643-202ENST00000553426 CFAP65Q6ZU64 1925 aaKnown RBP19.65■□□□□ 0.74
LINC00643-202ENST00000553426 HSPA1LP34931 641 aa19.64■□□□□ 0.73
LINC00643-202ENST00000553426 STAG3Q9UJ98 1225 aa19.64■□□□□ 0.73
LINC00643-202ENST00000553426 MED1Q15648 1581 aaPredicted RBP19.63■□□□□ 0.73
LINC00643-202ENST00000553426 ADGRL2O95490 1459 aa19.62■□□□□ 0.73
LINC00643-202ENST00000553426 EID1Q9Y6B2 187 aa19.62■□□□□ 0.73
LINC00643-202ENST00000553426 TOM1O60784 492 aa19.61■□□□□ 0.73
LINC00643-202ENST00000553426 IQGAP1P46940 1657 aa19.6■□□□□ 0.73
LINC00643-202ENST00000553426 PIP4K2BP78356 416 aa19.6■□□□□ 0.73
LINC00643-202ENST00000553426 TXNDC2Q86VQ3 553 aa19.6■□□□□ 0.73
LINC00643-202ENST00000553426 ANKRD50Q9ULJ7 1429 aa19.59■□□□□ 0.73
LINC00643-202ENST00000553426 SCAF1Q9H7N4 1312 aaKnown RBP19.59■□□□□ 0.73
LINC00643-202ENST00000553426 LMTK2Q8IWU2 1503 aa19.59■□□□□ 0.73
LINC00643-202ENST00000553426 UBR1Q8IWV7 1749 aa19.59■□□□□ 0.73
LINC00643-202ENST00000553426 SCAF11Q99590 1463 aaKnown RBP19.58■□□□□ 0.72
LINC00643-202ENST00000553426 VWDEQ8N2E2 1590 aa19.57■□□□□ 0.72
LINC00643-202ENST00000553426 SLIT1O75093 1534 aa19.56■□□□□ 0.72
LINC00643-202ENST00000553426 ALKQ9UM73 1620 aa19.55■□□□□ 0.72
LINC00643-202ENST00000553426 LTKP29376 864 aa19.55■□□□□ 0.72
LINC00643-202ENST00000553426 ARHGAP23Q9P227 1491 aa19.54■□□□□ 0.72
LINC00643-202ENST00000553426 IDI1Q13907 227 aa19.54■□□□□ 0.72
LINC00643-202ENST00000553426 SLC52A1Q9NWF4 448 aa19.54■□□□□ 0.72
LINC00643-202ENST00000553426 TMEM2Q9UHN6 1383 aa19.53■□□□□ 0.72
LINC00643-202ENST00000553426 EFCAB6Q5THR3 1501 aa19.52■□□□□ 0.72
LINC00643-202ENST00000553426 PIK3C2BO00750 1634 aa19.52■□□□□ 0.72
LINC00643-202ENST00000553426 NOS1P29475 1434 aa19.51■□□□□ 0.71
LINC00643-202ENST00000553426 RPRD2Q5VT52 1461 aaKnown RBP19.5■□□□□ 0.71
LINC00643-202ENST00000553426 ROCK1Q13464 1354 aa19.5■□□□□ 0.71
LINC00643-202ENST00000553426 ITGAEP38570 1179 aa19.49■□□□□ 0.71
LINC00643-202ENST00000553426 KDM5AP29375 1690 aaKnown RBP19.49■□□□□ 0.71
LINC00643-202ENST00000553426 PPARGC1BQ86YN6 1023 aaKnown RBP19.48■□□□□ 0.71
LINC00643-202ENST00000553426 SYNMO15061 1565 aa19.47■□□□□ 0.71
LINC00643-202ENST00000553426 STRCP1A6NGW2 1772 aa19.47■□□□□ 0.71
LINC00643-202ENST00000553426 LRRC7Q96NW7 1537 aa19.46■□□□□ 0.71
LINC00643-202ENST00000553426 HDGFP51858 240 aaKnown RBP19.46■□□□□ 0.71
LINC00643-202ENST00000553426 BCANQ96GW7 911 aa19.45■□□□□ 0.7
LINC00643-202ENST00000553426 TET3O43151 1660 aa19.44■□□□□ 0.7
LINC00643-202ENST00000553426 ADGRB3O60242 1522 aa19.44■□□□□ 0.7
LINC00643-202ENST00000553426 SENP3Q9H4L4 574 aaPredicted RBP19.43■□□□□ 0.7
LINC00643-202ENST00000553426 UNC13BO14795 1591 aa19.42■□□□□ 0.7
LINC00643-202ENST00000553426 PPP1R15AO75807 674 aaPredicted RBP19.41■□□□□ 0.7
LINC00643-202ENST00000553426 PHF23Q9BUL5 403 aaPredicted RBP19.41■□□□□ 0.7
LINC00643-202ENST00000553426 NUP155O75694 1391 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms