RNA–Protein interactions for RNA: ENST00000552433.1

LETMD1-233, Transcript of LETM1 domain containing 1, human

TSL 2

Gene LETMD1, Length 727 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LETMD1-233	ENST00000552433	EPAS1	Q99814	870 aa		13.64	□□□□□ -0.23
LETMD1-233	ENST00000552433	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.63	□□□□□ -0.23
LETMD1-233	ENST00000552433	SLC4A5	Q9BY07	1137 aa		13.63	□□□□□ -0.23
LETMD1-233	ENST00000552433	C6orf132	Q5T0Z8	1188 aa		13.62	□□□□□ -0.23
LETMD1-233	ENST00000552433	PPP1R3G	B7ZBB8	358 aa		13.61	□□□□□ -0.23
LETMD1-233	ENST00000552433	NBR1	Q14596	966 aa		13.61	□□□□□ -0.23
LETMD1-233	ENST00000552433	PROX2	Q3B8N5	592 aa		13.61	□□□□□ -0.23
LETMD1-233	ENST00000552433	KCTD12	Q96CX2	325 aa	Known RBP	13.61	□□□□□ -0.23
LETMD1-233	ENST00000552433	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.61	□□□□□ -0.23
LETMD1-233	ENST00000552433	GRXCR2	A6NFK2	248 aa		13.6	□□□□□ -0.23
LETMD1-233	ENST00000552433	BHMG1	C9JSJ3	638 aa	Predicted RBP	13.59	□□□□□ -0.23
LETMD1-233	ENST00000552433	PLCB2	Q00722	1185 aa		13.58	□□□□□ -0.24
LETMD1-233	ENST00000552433	TSR1	Q2NL82	804 aa	Known RBP	13.56	□□□□□ -0.24
LETMD1-233	ENST00000552433	MAP3K7	O43318	606 aa		13.55	□□□□□ -0.24
LETMD1-233	ENST00000552433	PRIM1	P49642	420 aa	Known RBP	13.54	□□□□□ -0.24
LETMD1-233	ENST00000552433	MRPL50	Q8N5N7	158 aa	Known RBP	13.54	□□□□□ -0.24
LETMD1-233	ENST00000552433	HCST	Q9UBK5	93 aa		13.54	□□□□□ -0.24
LETMD1-233	ENST00000552433	EN1	Q05925	392 aa	Predicted RBP	13.53	□□□□□ -0.24
LETMD1-233	ENST00000552433	GOLGA8CP	A6NN73	597 aa		13.52	□□□□□ -0.25
LETMD1-233	ENST00000552433	KCNV2	Q8TDN2	545 aa		13.52	□□□□□ -0.25
LETMD1-233	ENST00000552433	KIAA1468	Q9P260	1216 aa		13.51	□□□□□ -0.25
LETMD1-233	ENST00000552433	PTPN5	P54829	565 aa		13.5	□□□□□ -0.25
LETMD1-233	ENST00000552433	RABGEF1	Q9UJ41	708 aa		13.5	□□□□□ -0.25
LETMD1-233	ENST00000552433	NBPF3	Q9H094	633 aa		13.49	□□□□□ -0.25
LETMD1-233	ENST00000552433	OSBP	P22059	807 aa		13.48	□□□□□ -0.25
LETMD1-233	ENST00000552433	WNT2B	Q93097	391 aa		13.48	□□□□□ -0.25
LETMD1-233	ENST00000552433	ARHGEF1	Q92888	912 aa	Known RBP	13.47	□□□□□ -0.25
LETMD1-233	ENST00000552433	TRIM6-TRIM34	B2RNG4	842 aa		13.45	□□□□□ -0.26
LETMD1-233	ENST00000552433	HAP1	P54257	671 aa	Predicted RBP	13.44	□□□□□ -0.26
LETMD1-233	ENST00000552433	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.44	□□□□□ -0.26
LETMD1-233	ENST00000552433	MLLT3	P42568	568 aa	Predicted RBP	13.43	□□□□□ -0.26
LETMD1-233	ENST00000552433	THSD4	Q6ZMP0	1018 aa		13.42	□□□□□ -0.26
LETMD1-233	ENST00000552433	CDHR5	Q9HBB8	845 aa		13.42	□□□□□ -0.26
LETMD1-233	ENST00000552433	TSKS	Q9UJT2	592 aa		13.42	□□□□□ -0.26
LETMD1-233	ENST00000552433	ONECUT3	O60422	494 aa	Predicted RBP	13.41	□□□□□ -0.26
LETMD1-233	ENST00000552433	CDCA7L	Q96GN5	454 aa		13.39	□□□□□ -0.27
LETMD1-233	ENST00000552433	PLA2G2E	Q9NZK7	142 aa		13.38	□□□□□ -0.27
LETMD1-233	ENST00000552433	PRSS12	P56730	875 aa		13.37	□□□□□ -0.27
LETMD1-233	ENST00000552433	FAM198A	Q9UFP1	575 aa		13.37	□□□□□ -0.27
LETMD1-233	ENST00000552433	LAPTM4B	Q86VI4	370 aa		13.36	□□□□□ -0.27
LETMD1-233	ENST00000552433	PACS2	Q86VP3	889 aa		13.36	□□□□□ -0.27
LETMD1-233	ENST00000552433	ZFR	Q96KR1	1074 aa	Known RBP	13.36	□□□□□ -0.27
LETMD1-233	ENST00000552433	SMAP	O00193	183 aa		13.35	□□□□□ -0.27
LETMD1-233	ENST00000552433	BCAM	P50895	628 aa		13.35	□□□□□ -0.27
LETMD1-233	ENST00000552433	ANKK1	Q8NFD2	765 aa		13.35	□□□□□ -0.27
LETMD1-233	ENST00000552433	P3H3	Q8IVL6	736 aa		13.34	□□□□□ -0.27
LETMD1-233	ENST00000552433	C3orf80	F5H4A9	247 aa		13.33	□□□□□ -0.28
LETMD1-233	ENST00000552433	CERK	Q8TCT0	537 aa		13.33	□□□□□ -0.28
LETMD1-233	ENST00000552433	SEMA3E	O15041	775 aa		13.32	□□□□□ -0.28
LETMD1-233	ENST00000552433	NPDC1	Q9NQX5	325 aa	Predicted RBP	13.32	□□□□□ -0.28
LETMD1-233	ENST00000552433	KDM2A	Q9Y2K7	1162 aa		13.32	□□□□□ -0.28
LETMD1-233	ENST00000552433	FAM98C	Q17RN3	349 aa	Known RBP	13.31	□□□□□ -0.28
LETMD1-233	ENST00000552433	SOWAHB	A6NEL2	793 aa		13.29	□□□□□ -0.28
LETMD1-233	ENST00000552433	PNMA3	Q9UL41	463 aa		13.28	□□□□□ -0.28
LETMD1-233	ENST00000552433	TATDN2	Q93075	761 aa		13.27	□□□□□ -0.29
LETMD1-233	ENST00000552433	NUDT18	Q6ZVK8	323 aa		13.26	□□□□□ -0.29
LETMD1-233	ENST00000552433	PADI6	Q6TGC4	694 aa		13.25	□□□□□ -0.29
LETMD1-233	ENST00000552433	WBP1L	Q9NX94	342 aa		13.25	□□□□□ -0.29
LETMD1-233	ENST00000552433	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.24	□□□□□ -0.29
LETMD1-233	ENST00000552433	NUTM2F	A1L443	756 aa		13.23	□□□□□ -0.29
LETMD1-233	ENST00000552433	LRCH3	Q96II8	777 aa		13.23	□□□□□ -0.29
LETMD1-233	ENST00000552433	NBPF26	B4DH59	902 aa		13.22	□□□□□ -0.29
LETMD1-233	ENST00000552433	SAMD7	Q7Z3H4	446 aa		13.21	□□□□□ -0.29
LETMD1-233	ENST00000552433	HPS5	Q9UPZ3	1129 aa		13.21	□□□□□ -0.29
LETMD1-233	ENST00000552433	TTC13	Q8NBP0	860 aa		13.2	□□□□□ -0.3
LETMD1-233	ENST00000552433	RBM27	Q9P2N5	1060 aa	Known RBP	13.2	□□□□□ -0.3
LETMD1-233	ENST00000552433	PTGDR	Q13258	359 aa		13.18	□□□□□ -0.3
LETMD1-233	ENST00000552433	TSR3	Q9UJK0	312 aa	Known RBP	13.18	□□□□□ -0.3
LETMD1-233	ENST00000552433	TESPA1	A2RU30	521 aa	Predicted RBP	13.15	□□□□□ -0.3
LETMD1-233	ENST00000552433	PPP4C	P60510	307 aa		13.15	□□□□□ -0.3
LETMD1-233	ENST00000552433	RBM26	Q5T8P6	1007 aa	Known RBP	13.15	□□□□□ -0.3
LETMD1-233	ENST00000552433	RNF40	O75150	1001 aa		13.12	□□□□□ -0.31
LETMD1-233	ENST00000552433	HDGF	P51858	240 aa	Known RBP	13.12	□□□□□ -0.31
LETMD1-233	ENST00000552433	FAM161A	Q3B820	660 aa		13.12	□□□□□ -0.31
LETMD1-233	ENST00000552433	VSIG10	Q8N0Z9	540 aa		13.12	□□□□□ -0.31
LETMD1-233	ENST00000552433	EYA1	Q99502	592 aa		13.11	□□□□□ -0.31
LETMD1-233	ENST00000552433	SWT1	Q5T5J6	900 aa	Known RBP	13.09	□□□□□ -0.31
LETMD1-233	ENST00000552433	NYAP1	Q6ZVC0	841 aa		13.09	□□□□□ -0.31
LETMD1-233	ENST00000552433	FCHSD2	O94868	740 aa		13.08	□□□□□ -0.32
LETMD1-233	ENST00000552433	SMYD5	Q6GMV2	418 aa		13.08	□□□□□ -0.32
LETMD1-233	ENST00000552433	IFFO2	Q5TF58	517 aa		13.06	□□□□□ -0.32
LETMD1-233	ENST00000552433	ITGBL1	O95965	494 aa	Predicted RBP	13.05	□□□□□ -0.32
LETMD1-233	ENST00000552433	ADGRG1	Q9Y653	693 aa		13.05	□□□□□ -0.32
LETMD1-233	ENST00000552433	KCNC4	Q03721	635 aa		13.02	□□□□□ -0.33
LETMD1-233	ENST00000552433	RBM46	Q8TBY0	533 aa	Known RBP	13.02	□□□□□ -0.33
LETMD1-233	ENST00000552433		A0A0G2JS52	829 aa		13.01	□□□□□ -0.33
LETMD1-233	ENST00000552433	FECH	P22830	423 aa		13.01	□□□□□ -0.33
LETMD1-233	ENST00000552433	APLP1	P51693	650 aa		12.99	□□□□□ -0.33
LETMD1-233	ENST00000552433	SLF2	Q8IX21	1173 aa		12.99	□□□□□ -0.33
LETMD1-233	ENST00000552433	RCCD1	A6NED2	376 aa		12.98	□□□□□ -0.33
LETMD1-233	ENST00000552433	DNAJB2	P25686	324 aa		12.98	□□□□□ -0.33
LETMD1-233	ENST00000552433	HIC1	Q14526	733 aa		12.98	□□□□□ -0.33
LETMD1-233	ENST00000552433	TJAP1	Q5JTD0	557 aa		12.96	□□□□□ -0.33
LETMD1-233	ENST00000552433	MTR	Q99707	1265 aa		12.95	□□□□□ -0.34
LETMD1-233	ENST00000552433	TMEM134	Q9H6X4	195 aa		12.95	□□□□□ -0.34
LETMD1-233	ENST00000552433	GNPAT	O15228	680 aa		12.94	□□□□□ -0.34
LETMD1-233	ENST00000552433	GPR37	O15354	613 aa		12.94	□□□□□ -0.34
LETMD1-233	ENST00000552433	SLC4A3	P48751	1232 aa		12.93	□□□□□ -0.34
LETMD1-233	ENST00000552433	ZNF516	Q92618	1163 aa		12.93	□□□□□ -0.34
LETMD1-233	ENST00000552433	GPIHBP1	Q8IV16	184 aa		12.92	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms