RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 SLC4A5Q9BY07 1137 aa11.04□□□□□ -0.64
SCAF11-213ENST00000550629 ANO8Q9HCE9 1232 aaPredicted RBP11.04□□□□□ -0.64
SCAF11-213ENST00000550629 E2F4Q16254 413 aa11.03□□□□□ -0.64
SCAF11-213ENST00000550629 GOLGA8CPA6NN73 597 aa11.02□□□□□ -0.65
SCAF11-213ENST00000550629 DPYSL4O14531 572 aa11.01□□□□□ -0.65
SCAF11-213ENST00000550629 HAP1P54257 671 aaPredicted RBP11.01□□□□□ -0.65
SCAF11-213ENST00000550629 PTPN5P54829 565 aa11.01□□□□□ -0.65
SCAF11-213ENST00000550629 ZBED2Q9BTP6 218 aa11.01□□□□□ -0.65
SCAF11-213ENST00000550629 ADAM33Q9BZ11 813 aa11.01□□□□□ -0.65
SCAF11-213ENST00000550629 MRPL50Q8N5N7 158 aaKnown RBP10.99□□□□□ -0.65
SCAF11-213ENST00000550629 NBPF3Q9H094 633 aa10.99□□□□□ -0.65
SCAF11-213ENST00000550629 WNT2BQ93097 391 aa10.96□□□□□ -0.65
SCAF11-213ENST00000550629 PPP1R3GB7ZBB8 358 aa10.95□□□□□ -0.66
SCAF11-213ENST00000550629 BHMG1C9JSJ3 638 aaPredicted RBP10.95□□□□□ -0.66
SCAF11-213ENST00000550629 THSD4Q6ZMP0 1018 aa10.95□□□□□ -0.66
SCAF11-213ENST00000550629 FBXW7Q969H0 707 aa10.94□□□□□ -0.66
SCAF11-213ENST00000550629 PCDHGA10Q9Y5H3 936 aa10.94□□□□□ -0.66
SCAF11-213ENST00000550629 RGS20O76081 388 aa10.93□□□□□ -0.66
SCAF11-213ENST00000550629 ARIH1Q9Y4X5 557 aaPredicted RBP10.93□□□□□ -0.66
SCAF11-213ENST00000550629 TYW1BQ6NUM6 668 aa10.92□□□□□ -0.66
SCAF11-213ENST00000550629 PHF14O94880 888 aa10.91□□□□□ -0.66
SCAF11-213ENST00000550629 PDIA6Q15084 440 aa10.9□□□□□ -0.66
SCAF11-213ENST00000550629 SPDYE16A6NNV3 312 aaPredicted RBP10.89□□□□□ -0.67
SCAF11-213ENST00000550629 KCNV2Q8TDN2 545 aa10.89□□□□□ -0.67
SCAF11-213ENST00000550629 PROX2Q3B8N5 592 aa10.88□□□□□ -0.67
SCAF11-213ENST00000550629 RABGEF1Q9UJ41 708 aa10.88□□□□□ -0.67
SCAF11-213ENST00000550629 COL9A1P20849 921 aa10.87□□□□□ -0.67
SCAF11-213ENST00000550629 ANKK1Q8NFD2 765 aa10.87□□□□□ -0.67
SCAF11-213ENST00000550629 KDM2AQ9Y2K7 1162 aa10.87□□□□□ -0.67
SCAF11-213ENST00000550629 DDX12PQ92771 950 aa10.86□□□□□ -0.67
SCAF11-213ENST00000550629 ARHGEF1Q92888 912 aaKnown RBP10.85□□□□□ -0.67
SCAF11-213ENST00000550629 EPAS1Q99814 870 aa10.85□□□□□ -0.67
SCAF11-213ENST00000550629 Q6ZNB5 142 aa10.83□□□□□ -0.68
SCAF11-213ENST00000550629 P3H3Q8IVL6 736 aa10.82□□□□□ -0.68
SCAF11-213ENST00000550629 SCRIBQ14160 1630 aa10.82□□□□□ -0.68
SCAF11-213ENST00000550629 A0A0G2JS52 829 aa10.81□□□□□ -0.68
SCAF11-213ENST00000550629 IFFO2Q5TF58 517 aa10.81□□□□□ -0.68
SCAF11-213ENST00000550629 LAPTM4BQ86VI4 370 aa10.81□□□□□ -0.68
SCAF11-213ENST00000550629 VSIG10Q8N0Z9 540 aa10.81□□□□□ -0.68
SCAF11-213ENST00000550629 RBM33Q96EV2 1170 aaKnown RBP10.81□□□□□ -0.68
SCAF11-213ENST00000550629 C6orf132Q5T0Z8 1188 aa10.8□□□□□ -0.68
SCAF11-213ENST00000550629 KIAA1468Q9P260 1216 aa10.8□□□□□ -0.68
SCAF11-213ENST00000550629 UNC13AQ9UPW8 1703 aa10.78□□□□□ -0.68
SCAF11-213ENST00000550629 GRXCR2A6NFK2 248 aa10.78□□□□□ -0.68
SCAF11-213ENST00000550629 BCAMP50895 628 aa10.78□□□□□ -0.68
SCAF11-213ENST00000550629 NBR1Q14596 966 aa10.78□□□□□ -0.68
SCAF11-213ENST00000550629 SEPT9Q9UHD8 586 aaPredicted RBP10.77□□□□□ -0.69
SCAF11-213ENST00000550629 SHROOM4Q9ULL8 1493 aa10.76□□□□□ -0.69
SCAF11-213ENST00000550629 ZFRQ96KR1 1074 aaKnown RBP10.76□□□□□ -0.69
SCAF11-213ENST00000550629 SOWAHBA6NEL2 793 aa10.75□□□□□ -0.69
SCAF11-213ENST00000550629 TRIM6-TRIM34B2RNG4 842 aa10.75□□□□□ -0.69
SCAF11-213ENST00000550629 ONECUT3O60422 494 aaPredicted RBP10.75□□□□□ -0.69
SCAF11-213ENST00000550629 BICRAQ9NZM4 1560 aa10.74□□□□□ -0.69
SCAF11-213ENST00000550629 MAP3K7O43318 606 aa10.74□□□□□ -0.69
SCAF11-213ENST00000550629 PRIM1P49642 420 aaKnown RBP10.74□□□□□ -0.69
SCAF11-213ENST00000550629 EN1Q05925 392 aaPredicted RBP10.74□□□□□ -0.69
SCAF11-213ENST00000550629 NYAP1Q6ZVC0 841 aa10.73□□□□□ -0.69
SCAF11-213ENST00000550629 OSBPP22059 807 aa10.72□□□□□ -0.69
SCAF11-213ENST00000550629 MLLT3P42568 568 aaPredicted RBP10.72□□□□□ -0.69
SCAF11-213ENST00000550629 FAM98CQ17RN3 349 aaKnown RBP10.72□□□□□ -0.69
SCAF11-213ENST00000550629 SEMA3EO15041 775 aa10.7□□□□□ -0.7
SCAF11-213ENST00000550629 ITGBL1O95965 494 aaPredicted RBP10.7□□□□□ -0.7
SCAF11-213ENST00000550629 TSR1Q2NL82 804 aaKnown RBP10.7□□□□□ -0.7
SCAF11-213ENST00000550629 LRCH3Q96II8 777 aa10.7□□□□□ -0.7
SCAF11-213ENST00000550629 LCE2BO14633 110 aa10.69□□□□□ -0.7
SCAF11-213ENST00000550629 WBP1LQ9NX94 342 aa10.69□□□□□ -0.7
SCAF11-213ENST00000550629 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.69□□□□□ -0.7
SCAF11-213ENST00000550629 PACS2Q86VP3 889 aa10.68□□□□□ -0.7
SCAF11-213ENST00000550629 HPS5Q9UPZ3 1129 aa10.67□□□□□ -0.7
SCAF11-213ENST00000550629 TSR3Q9UJK0 312 aaKnown RBP10.66□□□□□ -0.7
SCAF11-213ENST00000550629 KCNC4Q03721 635 aa10.64□□□□□ -0.71
SCAF11-213ENST00000550629 CDHR5Q9HBB8 845 aa10.64□□□□□ -0.71
SCAF11-213ENST00000550629 TSKSQ9UJT2 592 aa10.64□□□□□ -0.71
SCAF11-213ENST00000550629 TESPA1A2RU30 521 aaPredicted RBP10.62□□□□□ -0.71
SCAF11-213ENST00000550629 CDCA7LQ96GN5 454 aa10.62□□□□□ -0.71
SCAF11-213ENST00000550629 CERKQ8TCT0 537 aa10.61□□□□□ -0.71
SCAF11-213ENST00000550629 NBPF26B4DH59 902 aa10.6□□□□□ -0.71
SCAF11-213ENST00000550629 PRSS12P56730 875 aa10.6□□□□□ -0.71
SCAF11-213ENST00000550629 SMAPO00193 183 aa10.58□□□□□ -0.72
SCAF11-213ENST00000550629 PPP4CP60510 307 aa10.58□□□□□ -0.72
SCAF11-213ENST00000550629 NPDC1Q9NQX5 325 aaPredicted RBP10.58□□□□□ -0.72
SCAF11-213ENST00000550629 SAMD7Q7Z3H4 446 aa10.56□□□□□ -0.72
SCAF11-213ENST00000550629 PNMA3Q9UL41 463 aa10.56□□□□□ -0.72
SCAF11-213ENST00000550629 FAM198AQ9UFP1 575 aa10.55□□□□□ -0.72
SCAF11-213ENST00000550629 RNF40O75150 1001 aa10.54□□□□□ -0.72
SCAF11-213ENST00000550629 SMYD5Q6GMV2 418 aa10.54□□□□□ -0.72
SCAF11-213ENST00000550629 TRAF7Q6Q0C0 670 aa10.54□□□□□ -0.72
SCAF11-213ENST00000550629 NUTM2FA1L443 756 aa10.53□□□□□ -0.72
SCAF11-213ENST00000550629 RBM26Q5T8P6 1007 aaKnown RBP10.53□□□□□ -0.72
SCAF11-213ENST00000550629 TATDN2Q93075 761 aa10.53□□□□□ -0.72
SCAF11-213ENST00000550629 HDGFP51858 240 aaKnown RBP10.51□□□□□ -0.73
SCAF11-213ENST00000550629 PTGDRQ13258 359 aa10.51□□□□□ -0.73
SCAF11-213ENST00000550629 RBM27Q9P2N5 1060 aaKnown RBP10.51□□□□□ -0.73
SCAF11-213ENST00000550629 C3orf80F5H4A9 247 aa10.5□□□□□ -0.73
SCAF11-213ENST00000550629 PADI6Q6TGC4 694 aa10.49□□□□□ -0.73
SCAF11-213ENST00000550629 NUDT18Q6ZVK8 323 aa10.49□□□□□ -0.73
SCAF11-213ENST00000550629 TTC13Q8NBP0 860 aa10.49□□□□□ -0.73
SCAF11-213ENST00000550629 FCHSD2O94868 740 aa10.46□□□□□ -0.73
SCAF11-213ENST00000550629 MTRQ99707 1265 aa10.46□□□□□ -0.73
SCAF11-213ENST00000550629 IL21Q9HBE4 155 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms