RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 YEATS2Q9ULM3 1422 aa12.56□□□□□ -0.4
NEK3-201ENST00000550331 STAG3Q9UJ98 1225 aa12.56□□□□□ -0.4
NEK3-201ENST00000550331 CDK11AQ9UQ88 783 aaPredicted RBP12.56□□□□□ -0.4
NEK3-201ENST00000550331 ILDR2Q71H61 639 aa12.55□□□□□ -0.4
NEK3-201ENST00000550331 SOCS7O14512 581 aa12.54□□□□□ -0.4
NEK3-201ENST00000550331 EHMT2Q96KQ7 1210 aa12.54□□□□□ -0.4
NEK3-201ENST00000550331 TROQ12816 1431 aaPredicted RBP12.54□□□□□ -0.4
NEK3-201ENST00000550331 SCAPERQ9BY12 1400 aa12.54□□□□□ -0.4
NEK3-201ENST00000550331 ATP1B4Q9UN42 357 aaPredicted RBP12.53□□□□□ -0.4
NEK3-201ENST00000550331 KIF14Q15058 1648 aa12.52□□□□□ -0.4
NEK3-201ENST00000550331 EFCAB2Q5VUJ9 269 aa12.52□□□□□ -0.41
NEK3-201ENST00000550331 CDAN1Q8IWY9 1227 aa12.52□□□□□ -0.41
NEK3-201ENST00000550331 CLIP1P30622 1438 aa12.52□□□□□ -0.41
NEK3-201ENST00000550331 STRCQ7RTU9 1775 aa12.51□□□□□ -0.41
NEK3-201ENST00000550331 ARHGEF12Q9NZN5 1544 aa12.51□□□□□ -0.41
NEK3-201ENST00000550331 MS4A3Q96HJ5 214 aa12.5□□□□□ -0.41
NEK3-201ENST00000550331 SPATA31D1Q6ZQQ2 1576 aa12.5□□□□□ -0.41
NEK3-201ENST00000550331 MYO5CQ9NQX4 1742 aa12.5□□□□□ -0.41
NEK3-201ENST00000550331 ZNF518AQ6AHZ1 1483 aa12.49□□□□□ -0.41
NEK3-201ENST00000550331 SETD1BQ9UPS6 1966 aaKnown RBP12.49□□□□□ -0.41
NEK3-201ENST00000550331 ARHGAP5Q13017 1502 aa12.48□□□□□ -0.41
NEK3-201ENST00000550331 ATP10AO60312 1499 aa12.48□□□□□ -0.41
NEK3-201ENST00000550331 CCDC18Q5T9S5 1454 aa12.48□□□□□ -0.41
NEK3-201ENST00000550331 C9orf84Q5VXU9 1444 aa12.48□□□□□ -0.41
NEK3-201ENST00000550331 CASKIN1Q8WXD9 1431 aa12.48□□□□□ -0.41
NEK3-201ENST00000550331 CEBPAP49715 358 aaPredicted RBP12.47□□□□□ -0.41
NEK3-201ENST00000550331 KDM5CP41229 1560 aa12.46□□□□□ -0.42
NEK3-201ENST00000550331 UHRF1BP1Q6BDS2 1440 aa12.45□□□□□ -0.42
NEK3-201ENST00000550331 LRRIQ1Q96JM4 1722 aa12.44□□□□□ -0.42
NEK3-201ENST00000550331 FYCO1Q9BQS8 1478 aa12.44□□□□□ -0.42
NEK3-201ENST00000550331 REREQ9P2R6 1566 aa12.43□□□□□ -0.42
NEK3-201ENST00000550331 MLH3Q9UHC1 1453 aa12.42□□□□□ -0.42
NEK3-201ENST00000550331 PREX2Q70Z35 1606 aa12.42□□□□□ -0.42
NEK3-201ENST00000550331 ABCC1P33527 1531 aa12.42□□□□□ -0.42
NEK3-201ENST00000550331 C3P01024 1663 aa12.42□□□□□ -0.42
NEK3-201ENST00000550331 PTPRTO14522 1441 aa12.41□□□□□ -0.42
NEK3-201ENST00000550331 AFAP1Q8N556 730 aa12.41□□□□□ -0.42
NEK3-201ENST00000550331 DIP2CQ9Y2E4 1556 aa12.4□□□□□ -0.42
NEK3-201ENST00000550331 MYT1LQ9UL68 1186 aa12.39□□□□□ -0.43
NEK3-201ENST00000550331 CDC42BPBQ9Y5S2 1711 aa12.39□□□□□ -0.43
NEK3-201ENST00000550331 TRAPPC8Q9Y2L5 1435 aa12.38□□□□□ -0.43
NEK3-201ENST00000550331 LTBP4Q8N2S1 1624 aa12.38□□□□□ -0.43
NEK3-201ENST00000550331 AGLP35573 1532 aa12.37□□□□□ -0.43
NEK3-201ENST00000550331 ATN1P54259 1190 aaPredicted RBP12.37□□□□□ -0.43
NEK3-201ENST00000550331 ABCA6Q8N139 1617 aa12.37□□□□□ -0.43
NEK3-201ENST00000550331 ITSN2Q9NZM3 1697 aa12.36□□□□□ -0.43
NEK3-201ENST00000550331 IQSEC2Q5JU85 1478 aa12.36□□□□□ -0.43
NEK3-201ENST00000550331 MNX1P50219 401 aaPredicted RBP12.35□□□□□ -0.43
NEK3-201ENST00000550331 ESF1Q9H501 851 aaKnown RBP12.35□□□□□ -0.43
NEK3-201ENST00000550331 GPATCH8Q9UKJ3 1502 aaKnown RBP12.34□□□□□ -0.43
NEK3-201ENST00000550331 CDC42BPAQ5VT25 1732 aa12.34□□□□□ -0.43
NEK3-201ENST00000550331 POTEFA5A3E0 1075 aa12.33□□□□□ -0.44
NEK3-201ENST00000550331 NCOA1Q15788 1441 aa12.33□□□□□ -0.44
NEK3-201ENST00000550331 SAMD9LQ8IVG5 1584 aa12.33□□□□□ -0.44
NEK3-201ENST00000550331 KIAA1107Q9UPP5 1409 aa12.32□□□□□ -0.44
NEK3-201ENST00000550331 PLEKHH2Q8IVE3 1493 aa12.32□□□□□ -0.44
NEK3-201ENST00000550331 SYCP2Q9BX26 1530 aa12.32□□□□□ -0.44
NEK3-201ENST00000550331 KIDINS220Q9ULH0 1771 aa12.31□□□□□ -0.44
NEK3-201ENST00000550331 CNTLNQ9NXG0 1405 aa12.31□□□□□ -0.44
NEK3-201ENST00000550331 CAMSAP1Q5T5Y3 1602 aa12.31□□□□□ -0.44
NEK3-201ENST00000550331 MMRN1Q13201 1228 aa12.3□□□□□ -0.44
NEK3-201ENST00000550331 ZNF777Q9ULD5 760 aaPredicted RBP12.3□□□□□ -0.44
NEK3-201ENST00000550331 MTUS2Q5JR59 1369 aa12.3□□□□□ -0.44
NEK3-201ENST00000550331 CCNB3Q8WWL7 1395 aa12.3□□□□□ -0.44
NEK3-201ENST00000550331 SUPT6HQ7KZ85 1726 aaKnown RBP12.29□□□□□ -0.44
NEK3-201ENST00000550331 CFDP1Q9UEE9 299 aaPredicted RBP12.29□□□□□ -0.44
NEK3-201ENST00000550331 SPAG9O60271 1321 aaKnown RBP12.29□□□□□ -0.44
NEK3-201ENST00000550331 MROH2AA6NES4 1674 aa12.29□□□□□ -0.44
NEK3-201ENST00000550331 ATP7AQ04656 1500 aa12.27□□□□□ -0.44
NEK3-201ENST00000550331 EHBP1L1Q8N3D4 1523 aa12.27□□□□□ -0.44
NEK3-201ENST00000550331 INO80Q9ULG1 1556 aaPredicted RBP12.27□□□□□ -0.44
NEK3-201ENST00000550331 UBAP1LF5GYI3 381 aa12.27□□□□□ -0.45
NEK3-201ENST00000550331 HNRNPMP52272 730 aaKnown RBP eCLIP12.26□□□□□ -0.45
NEK3-201ENST00000550331 ZNF335Q9H4Z2 1342 aaPredicted RBP12.26□□□□□ -0.45
NEK3-201ENST00000550331 NCKAP5LQ9HCH0 1330 aa12.26□□□□□ -0.45
NEK3-201ENST00000550331 NPATQ14207 1427 aa12.26□□□□□ -0.45
NEK3-201ENST00000550331 CEP162Q5TB80 1403 aa12.26□□□□□ -0.45
NEK3-201ENST00000550331 PLXNC1O60486 1568 aa12.26□□□□□ -0.45
NEK3-201ENST00000550331 A2MP01023 1474 aa12.24□□□□□ -0.45
NEK3-201ENST00000550331 ZNF142P52746 1687 aaPredicted RBP12.24□□□□□ -0.45
NEK3-201ENST00000550331 TIAM1Q13009 1591 aa12.24□□□□□ -0.45
NEK3-201ENST00000550331 SPNS2Q8IVW8 549 aa12.24□□□□□ -0.45
NEK3-201ENST00000550331 CLTCQ00610 1675 aaKnown RBP12.23□□□□□ -0.45
NEK3-201ENST00000550331 MYO3AQ8NEV4 1616 aa12.23□□□□□ -0.45
NEK3-201ENST00000550331 BMP2KQ9NSY1 1161 aaPredicted RBP12.23□□□□□ -0.45
NEK3-201ENST00000550331 MBD5Q9P267 1494 aa12.22□□□□□ -0.45
NEK3-201ENST00000550331 ZMYM3Q14202 1370 aa12.22□□□□□ -0.45
NEK3-201ENST00000550331 RTEL1-TNFRSF6BF6WH68 1400 aa12.21□□□□□ -0.45
NEK3-201ENST00000550331 ST18O60284 1047 aa12.21□□□□□ -0.45
NEK3-201ENST00000550331 CEP170BQ9Y4F5 1589 aaPredicted RBP12.21□□□□□ -0.46
NEK3-201ENST00000550331 MED1Q15648 1581 aaPredicted RBP12.2□□□□□ -0.46
NEK3-201ENST00000550331 PLA2R1Q13018 1463 aa12.2□□□□□ -0.46
NEK3-201ENST00000550331 ZNF644Q9H582 1327 aaPredicted RBP12.19□□□□□ -0.46
NEK3-201ENST00000550331 PKD2Q13563 968 aa12.19□□□□□ -0.46
NEK3-201ENST00000550331 ADGBQ8N7X0 1667 aa12.19□□□□□ -0.46
NEK3-201ENST00000550331 TIE1P35590 1138 aa12.18□□□□□ -0.46
NEK3-201ENST00000550331 CCDC61Q9Y6R9 512 aa12.18□□□□□ -0.46
NEK3-201ENST00000550331 TCOF1Q13428 1488 aaKnown RBP12.18□□□□□ -0.46
NEK3-201ENST00000550331 NCOA2Q15596 1464 aa12.18□□□□□ -0.46
NEK3-201ENST00000550331 CCDC141Q6ZP82 1450 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms