RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 KIF3BO15066 747 aa18.62■□□□□ 0.57
SMARCD1-208ENST00000550280 PZPP20742 1482 aa18.61■□□□□ 0.57
SMARCD1-208ENST00000550280 NEURL4Q96JN8 1562 aa18.6■□□□□ 0.57
SMARCD1-208ENST00000550280 KDM5DQ9BY66 1539 aa18.6■□□□□ 0.57
SMARCD1-208ENST00000550280 SPATA31D1Q6ZQQ2 1576 aa18.59■□□□□ 0.57
SMARCD1-208ENST00000550280 TNRQ92752 1358 aa18.59■□□□□ 0.57
SMARCD1-208ENST00000550280 ARHGEF5Q12774 1597 aa18.59■□□□□ 0.57
SMARCD1-208ENST00000550280 FAM135AQ9P2D6 1515 aa18.57■□□□□ 0.56
SMARCD1-208ENST00000550280 LRRC9Q6ZRR7 1453 aa18.57■□□□□ 0.56
SMARCD1-208ENST00000550280 RSPH4AQ5TD94 716 aa18.55■□□□□ 0.56
SMARCD1-208ENST00000550280 VPS8Q8N3P4 1428 aa18.55■□□□□ 0.56
SMARCD1-208ENST00000550280 LOC105371045A0A1W2PR82 267 aa18.54■□□□□ 0.56
SMARCD1-208ENST00000550280 UBAP1LF5GYI3 381 aa18.54■□□□□ 0.56
SMARCD1-208ENST00000550280 KANK4Q5T7N3 995 aaPredicted RBP18.54■□□□□ 0.56
SMARCD1-208ENST00000550280 MIA2Q96PC5 1412 aa18.54■□□□□ 0.56
SMARCD1-208ENST00000550280 WASHC2CQ9Y4E1 1318 aa18.53■□□□□ 0.56
SMARCD1-208ENST00000550280 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.53■□□□□ 0.56
SMARCD1-208ENST00000550280 MAST1Q9Y2H9 1570 aa18.51■□□□□ 0.55
SMARCD1-208ENST00000550280 SOCS7O14512 581 aa18.51■□□□□ 0.55
SMARCD1-208ENST00000550280 MROH1Q8NDA8 1641 aa18.51■□□□□ 0.55
SMARCD1-208ENST00000550280 RNF17Q9BXT8 1623 aaKnown RBP18.51■□□□□ 0.55
SMARCD1-208ENST00000550280 POLR1AO95602 1720 aaPredicted RBP18.51■□□□□ 0.55
SMARCD1-208ENST00000550280 ABCC3O15438 1527 aa18.5■□□□□ 0.55
SMARCD1-208ENST00000550280 VWDEQ8N2E2 1590 aa18.5■□□□□ 0.55
SMARCD1-208ENST00000550280 NLRP1Q9C000 1473 aa18.49■□□□□ 0.55
SMARCD1-208ENST00000550280 UGGT1Q9NYU2 1555 aa18.48■□□□□ 0.55
SMARCD1-208ENST00000550280 SHANK2Q9UPX8 1470 aa18.48■□□□□ 0.55
SMARCD1-208ENST00000550280 TSPY4P0CV99 314 aa18.48■□□□□ 0.55
SMARCD1-208ENST00000550280 TSPY10P0CW01 314 aa18.48■□□□□ 0.55
SMARCD1-208ENST00000550280 MED14O60244 1454 aa18.47■□□□□ 0.55
SMARCD1-208ENST00000550280 ALKQ9UM73 1620 aa18.47■□□□□ 0.55
SMARCD1-208ENST00000550280 CPS1P31327 1500 aa18.46■□□□□ 0.55
SMARCD1-208ENST00000550280 MAP3K1Q13233 1512 aa18.46■□□□□ 0.55
SMARCD1-208ENST00000550280 MYOM3Q5VTT5 1437 aa18.45■□□□□ 0.54
SMARCD1-208ENST00000550280 ERVK-7P63135 1459 aa18.45■□□□□ 0.54
SMARCD1-208ENST00000550280 DEPDC5O75140 1603 aa18.45■□□□□ 0.54
SMARCD1-208ENST00000550280 NPHP4O75161 1426 aaPredicted RBP18.44■□□□□ 0.54
SMARCD1-208ENST00000550280 ANKLE2Q86XL3 938 aa18.44■□□□□ 0.54
SMARCD1-208ENST00000550280 EIF2AK4Q9P2K8 1649 aaKnown RBP18.43■□□□□ 0.54
SMARCD1-208ENST00000550280 THEMISQ8N1K5 641 aaPredicted RBP18.43■□□□□ 0.54
SMARCD1-208ENST00000550280 ZC3H13Q5T200 1668 aaKnown RBP18.42■□□□□ 0.54
SMARCD1-208ENST00000550280 HSPA1LP34931 641 aa18.42■□□□□ 0.54
SMARCD1-208ENST00000550280 STRCP1A6NGW2 1772 aa18.4■□□□□ 0.54
SMARCD1-208ENST00000550280 CEP152O94986 1710 aa18.39■□□□□ 0.53
SMARCD1-208ENST00000550280 ABCC5O15440 1437 aa18.39■□□□□ 0.53
SMARCD1-208ENST00000550280 IQGAP1P46940 1657 aa18.38■□□□□ 0.53
SMARCD1-208ENST00000550280 PIP4K2BP78356 416 aa18.38■□□□□ 0.53
SMARCD1-208ENST00000550280 DUOX2Q9NRD8 1548 aa18.38■□□□□ 0.53
SMARCD1-208ENST00000550280 PRDM15P57071 1507 aaPredicted RBP18.36■□□□□ 0.53
SMARCD1-208ENST00000550280 UBR1Q8IWV7 1749 aa18.35■□□□□ 0.53
SMARCD1-208ENST00000550280 LRRC7Q96NW7 1537 aa18.35■□□□□ 0.53
SMARCD1-208ENST00000550280 KIF15Q9NS87 1388 aa18.35■□□□□ 0.53
SMARCD1-208ENST00000550280 SCAF1Q9H7N4 1312 aaKnown RBP18.35■□□□□ 0.53
SMARCD1-208ENST00000550280 MED1Q15648 1581 aaPredicted RBP18.34■□□□□ 0.53
SMARCD1-208ENST00000550280 ARHGAP23Q9P227 1491 aa18.34■□□□□ 0.53
SMARCD1-208ENST00000550280 TOM1O60784 492 aa18.34■□□□□ 0.53
SMARCD1-208ENST00000550280 CROCC2H7BZ55 1655 aa18.34■□□□□ 0.53
SMARCD1-208ENST00000550280 ARHGAP31Q2M1Z3 1444 aa18.33■□□□□ 0.53
SMARCD1-208ENST00000550280 LTKP29376 864 aa18.33■□□□□ 0.52
SMARCD1-208ENST00000550280 ERBINQ96RT1 1412 aa18.32■□□□□ 0.52
SMARCD1-208ENST00000550280 PTPN23Q9H3S7 1636 aa18.31■□□□□ 0.52
SMARCD1-208ENST00000550280 RRP7BPQ9NSQ0 103 aa18.31■□□□□ 0.52
SMARCD1-208ENST00000550280 SLIT1O75093 1534 aa18.31■□□□□ 0.52
SMARCD1-208ENST00000550280 SCAF11Q99590 1463 aaKnown RBP18.31■□□□□ 0.52
SMARCD1-208ENST00000550280 DAPK1P53355 1430 aa18.31■□□□□ 0.52
SMARCD1-208ENST00000550280 CFAP65Q6ZU64 1925 aaKnown RBP18.28■□□□□ 0.52
SMARCD1-208ENST00000550280 FGD6Q6ZV73 1430 aa18.28■□□□□ 0.52
SMARCD1-208ENST00000550280 SYNMO15061 1565 aa18.28■□□□□ 0.52
SMARCD1-208ENST00000550280 PIK3C2BO00750 1634 aa18.27■□□□□ 0.51
SMARCD1-208ENST00000550280 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.25■□□□□ 0.514e-7■■□□□ 13.9
SMARCD1-208ENST00000550280 LMTK2Q8IWU2 1503 aa18.24■□□□□ 0.51
SMARCD1-208ENST00000550280 TXNDC2Q86VQ3 553 aa18.24■□□□□ 0.51
SMARCD1-208ENST00000550280 TMEM2Q9UHN6 1383 aa18.23■□□□□ 0.51
SMARCD1-208ENST00000550280 CHIC2Q9UKJ5 165 aa18.23■□□□□ 0.51
SMARCD1-208ENST00000550280 XIRP1Q702N8 1843 aaKnown RBP18.22■□□□□ 0.51
SMARCD1-208ENST00000550280 SENP3Q9H4L4 574 aaPredicted RBP18.21■□□□□ 0.51
SMARCD1-208ENST00000550280 IDI1Q13907 227 aa18.2■□□□□ 0.5
SMARCD1-208ENST00000550280 NOS1P29475 1434 aa18.2■□□□□ 0.5
SMARCD1-208ENST00000550280 ANKRD30AQ9BXX3 1397 aa18.18■□□□□ 0.5
SMARCD1-208ENST00000550280 ADGRL2O95490 1459 aa18.18■□□□□ 0.5
SMARCD1-208ENST00000550280 TET3O43151 1660 aa18.18■□□□□ 0.5
SMARCD1-208ENST00000550280 EFCAB6Q5THR3 1501 aa18.18■□□□□ 0.5
SMARCD1-208ENST00000550280 KANK1Q14678 1352 aa18.17■□□□□ 0.5
SMARCD1-208ENST00000550280 KDM5AP29375 1690 aaKnown RBP18.16■□□□□ 0.5
SMARCD1-208ENST00000550280 EID1Q9Y6B2 187 aa18.15■□□□□ 0.5
SMARCD1-208ENST00000550280 APLP2Q06481 763 aa18.14■□□□□ 0.49
SMARCD1-208ENST00000550280 ADGRB3O60242 1522 aa18.13■□□□□ 0.49
SMARCD1-208ENST00000550280 RGS17Q9UGC6 210 aaPredicted RBP18.13■□□□□ 0.49
SMARCD1-208ENST00000550280 TMEM94Q12767 1356 aa18.13■□□□□ 0.49
SMARCD1-208ENST00000550280 SLC26A8Q96RN1 970 aa18.12■□□□□ 0.49
SMARCD1-208ENST00000550280 RBM33Q96EV2 1170 aaKnown RBP18.11■□□□□ 0.49
SMARCD1-208ENST00000550280 FAM135BQ49AJ0 1406 aa18.1■□□□□ 0.49
SMARCD1-208ENST00000550280 KCNA6P17658 529 aa18.1■□□□□ 0.49
SMARCD1-208ENST00000550280 STAG3Q9UJ98 1225 aa18.1■□□□□ 0.49
SMARCD1-208ENST00000550280 NWD1Q149M9 1564 aa18.09■□□□□ 0.49
SMARCD1-208ENST00000550280 ZFYVE9O95405 1425 aa18.09■□□□□ 0.49
SMARCD1-208ENST00000550280 ANKRD50Q9ULJ7 1429 aa18.09■□□□□ 0.49
SMARCD1-208ENST00000550280 PHF23Q9BUL5 403 aaPredicted RBP18.09■□□□□ 0.49
SMARCD1-208ENST00000550280 FAM50AQ14320 339 aaKnown RBP18.06■□□□□ 0.48
SMARCD1-208ENST00000550280 SLC52A1Q9NWF4 448 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms