RNA–Protein interactions for RNA: ENST00000550020.6

TMEM116-209, Transcript of transmembrane protein 116, humanhuman

TSL 4

Gene TMEM116, Length 572 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-209ENST00000550020 SUPT16HQ9Y5B9 1047 aaKnown RBP12.3□□□□□ -0.44
TMEM116-209ENST00000550020 SPAG9O60271 1321 aaKnown RBP12.3□□□□□ -0.44
TMEM116-209ENST00000550020 PRKRIP1Q9H875 184 aaPredicted RBP12.29□□□□□ -0.44
TMEM116-209ENST00000550020 KTN1Q86UP2 1357 aaKnown RBP12.29□□□□□ -0.44
TMEM116-209ENST00000550020 KDM5CP41229 1560 aa12.28□□□□□ -0.44
TMEM116-209ENST00000550020 DCAF11Q8TEB1 546 aa12.28□□□□□ -0.44
TMEM116-209ENST00000550020 EIF2AK4Q9P2K8 1649 aaKnown RBP12.27□□□□□ -0.44
TMEM116-209ENST00000550020 NPM1P06748 294 aaKnown RBP eCLIP12.27□□□□□ -0.45
TMEM116-209ENST00000550020 KANK1Q14678 1352 aa12.27□□□□□ -0.45
TMEM116-209ENST00000550020 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.26□□□□□ -0.45
TMEM116-209ENST00000550020 C11orf95C9JLR9 678 aaPredicted RBP12.25□□□□□ -0.45
TMEM116-209ENST00000550020 HNRNPUQ00839 825 aaKnown RBP eCLIP12.25□□□□□ -0.45
TMEM116-209ENST00000550020 ABCA9Q8IUA7 1624 aa12.25□□□□□ -0.45
TMEM116-209ENST00000550020 FANCAO15360 1455 aa12.24□□□□□ -0.45
TMEM116-209ENST00000550020 LAMC1P11047 1609 aa12.24□□□□□ -0.45
TMEM116-209ENST00000550020 PRAG1Q86YV5 1406 aa12.24□□□□□ -0.45
TMEM116-209ENST00000550020 MRS2Q9HD23 443 aa12.24□□□□□ -0.45
TMEM116-209ENST00000550020 TRAPPC8Q9Y2L5 1435 aa12.23□□□□□ -0.45
TMEM116-209ENST00000550020 GPRASP1Q5JY77 1395 aa12.23□□□□□ -0.45
TMEM116-209ENST00000550020 OSCARQ8IYS5 282 aa12.23□□□□□ -0.45
TMEM116-209ENST00000550020 KDM2AQ9Y2K7 1162 aa12.23□□□□□ -0.45
TMEM116-209ENST00000550020 ZFYVE16Q7Z3T8 1539 aa12.22□□□□□ -0.45
TMEM116-209ENST00000550020 ERICH6BQ5W0A0 696 aa12.21□□□□□ -0.45
TMEM116-209ENST00000550020 ATP7AQ04656 1500 aa12.21□□□□□ -0.46
TMEM116-209ENST00000550020 PLA2R1Q13018 1463 aa12.21□□□□□ -0.46
TMEM116-209ENST00000550020 SLC24A1O60721 1099 aa12.2□□□□□ -0.46
TMEM116-209ENST00000550020 CFAP74Q9C0B2 1584 aa12.2□□□□□ -0.46
TMEM116-209ENST00000550020 ADGRL1O94910 1474 aa12.2□□□□□ -0.46
TMEM116-209ENST00000550020 ASXL2Q76L83 1435 aa12.2□□□□□ -0.46
TMEM116-209ENST00000550020 INO80Q9ULG1 1556 aaPredicted RBP12.19□□□□□ -0.46
TMEM116-209ENST00000550020 RALBP1Q15311 655 aa12.19□□□□□ -0.46
TMEM116-209ENST00000550020 A2MP01023 1474 aa12.19□□□□□ -0.46
TMEM116-209ENST00000550020 TRPM1Q7Z4N2 1603 aa12.19□□□□□ -0.46
TMEM116-209ENST00000550020 DHX29Q7Z478 1369 aaKnown RBP12.18□□□□□ -0.46
TMEM116-209ENST00000550020 ZBED9Q6R2W3 1325 aa12.18□□□□□ -0.46
TMEM116-209ENST00000550020 WASHC2CQ9Y4E1 1318 aa12.18□□□□□ -0.46
TMEM116-209ENST00000550020 ST20-MTHFSA0A0A6YYL1 179 aa12.18□□□□□ -0.46
TMEM116-209ENST00000550020 FKBP8Q14318 412 aa12.18□□□□□ -0.46
TMEM116-209ENST00000550020 POLR3GLQ9BT43 218 aa12.18□□□□□ -0.46
TMEM116-209ENST00000550020 SCAPERQ9BY12 1400 aa12.18□□□□□ -0.46
TMEM116-209ENST00000550020 DEPDC5O75140 1603 aa12.18□□□□□ -0.46
TMEM116-209ENST00000550020 TRPM2O94759 1503 aa12.17□□□□□ -0.46
TMEM116-209ENST00000550020 MYT1LQ9UL68 1186 aa12.17□□□□□ -0.46
TMEM116-209ENST00000550020 PTPRTO14522 1441 aa12.17□□□□□ -0.46
TMEM116-209ENST00000550020 NEURL4Q96JN8 1562 aa12.17□□□□□ -0.46
TMEM116-209ENST00000550020 ZNF518AQ6AHZ1 1483 aa12.16□□□□□ -0.46
TMEM116-209ENST00000550020 RGL3Q3MIN7 710 aa12.16□□□□□ -0.46
TMEM116-209ENST00000550020 CDCA8Q53HL2 280 aa12.16□□□□□ -0.46
TMEM116-209ENST00000550020 AFAP1Q8N556 730 aa12.16□□□□□ -0.46
TMEM116-209ENST00000550020 BCORL1Q5H9F3 1711 aa12.16□□□□□ -0.46
TMEM116-209ENST00000550020 TET3O43151 1660 aa12.16□□□□□ -0.46
TMEM116-209ENST00000550020 TMF1P82094 1093 aa12.15□□□□□ -0.46
TMEM116-209ENST00000550020 FAM9BQ8IZU0 186 aa12.15□□□□□ -0.46
TMEM116-209ENST00000550020 PRDM15P57071 1507 aaPredicted RBP12.15□□□□□ -0.46
TMEM116-209ENST00000550020 BRD4O60885 1362 aaPredicted RBP12.14□□□□□ -0.47
TMEM116-209ENST00000550020 VWDEQ8N2E2 1590 aa12.13□□□□□ -0.47
TMEM116-209ENST00000550020 MYBBP1AQ9BQG0 1328 aaKnown RBP12.13□□□□□ -0.47
TMEM116-209ENST00000550020 TMC1Q8TDI8 760 aa12.13□□□□□ -0.47
TMEM116-209ENST00000550020 KIF3BO15066 747 aa12.12□□□□□ -0.47
TMEM116-209ENST00000550020 EIF3AQ14152 1382 aaKnown RBP12.12□□□□□ -0.47
TMEM116-209ENST00000550020 E9PCH4 1651 aa12.11□□□□□ -0.47
TMEM116-209ENST00000550020 COL17A1Q9UMD9 1497 aaPredicted RBP12.11□□□□□ -0.47
TMEM116-209ENST00000550020 CD109Q6YHK3 1445 aa12.11□□□□□ -0.47
TMEM116-209ENST00000550020 SPHKAPQ2M3C7 1700 aa12.1□□□□□ -0.47
TMEM116-209ENST00000550020 LMTK2Q8IWU2 1503 aa12.1□□□□□ -0.47
TMEM116-209ENST00000550020 MLH3Q9UHC1 1453 aa12.09□□□□□ -0.47
TMEM116-209ENST00000550020 RNF17Q9BXT8 1623 aaKnown RBP12.09□□□□□ -0.47
TMEM116-209ENST00000550020 CEP152O94986 1710 aa12.08□□□□□ -0.47
TMEM116-209ENST00000550020 NEO1Q92859 1461 aa12.08□□□□□ -0.47
TMEM116-209ENST00000550020 INSRP06213 1382 aa12.08□□□□□ -0.48
TMEM116-209ENST00000550020 CCDC184Q52MB2 194 aa12.08□□□□□ -0.48
TMEM116-209ENST00000550020 NLRP13Q86W25 1043 aa12.08□□□□□ -0.48
TMEM116-209ENST00000550020 POGZQ7Z3K3 1410 aa12.08□□□□□ -0.48
TMEM116-209ENST00000550020 SCAF11Q99590 1463 aaKnown RBP12.08□□□□□ -0.48
TMEM116-209ENST00000550020 NBPF1Q3BBV0 1214 aa12.07□□□□□ -0.48
TMEM116-209ENST00000550020 SMG6Q86US8 1419 aaKnown RBP12.07□□□□□ -0.48
TMEM116-209ENST00000550020 MADDQ8WXG6 1647 aa12.07□□□□□ -0.48
TMEM116-209ENST00000550020 MYOM2P54296 1465 aa12.07□□□□□ -0.48
TMEM116-209ENST00000550020 EFCAB6Q5THR3 1501 aa12.06□□□□□ -0.48
TMEM116-209ENST00000550020 PNISRQ8TF01 805 aaKnown RBP12.06□□□□□ -0.48
TMEM116-209ENST00000550020 TESK2Q96S53 571 aa12.06□□□□□ -0.48
TMEM116-209ENST00000550020 ZMYM4Q5VZL5 1548 aa12.06□□□□□ -0.48
TMEM116-209ENST00000550020 KIAA1210Q9ULL0 1709 aa12.06□□□□□ -0.48
TMEM116-209ENST00000550020 PARD3Q8TEW0 1356 aa12.05□□□□□ -0.48
TMEM116-209ENST00000550020 CLTCL1P53675 1640 aa12.05□□□□□ -0.48
TMEM116-209ENST00000550020 HECW2Q9P2P5 1572 aa12.04□□□□□ -0.48
TMEM116-209ENST00000550020 LRPPRCP42704 1394 aaKnown RBP12.04□□□□□ -0.48
TMEM116-209ENST00000550020 KIDINS220Q9ULH0 1771 aa12.03□□□□□ -0.48
TMEM116-209ENST00000550020 PDE3BQ13370 1112 aa12.03□□□□□ -0.48
TMEM116-209ENST00000550020 BCANQ96GW7 911 aa12.03□□□□□ -0.48
TMEM116-209ENST00000550020 PPP4R2Q9NY27 417 aa12.03□□□□□ -0.48
TMEM116-209ENST00000550020 RPGRIP1LQ68CZ1 1315 aa12.03□□□□□ -0.48
TMEM116-209ENST00000550020 MROH1Q8NDA8 1641 aa12.03□□□□□ -0.48
TMEM116-209ENST00000550020 NUDCQ9Y266 331 aa12.02□□□□□ -0.49
TMEM116-209ENST00000550020 IQGAP1P46940 1657 aa12.02□□□□□ -0.49
TMEM116-209ENST00000550020 DISP3Q9P2K9 1392 aa12.02□□□□□ -0.49
TMEM116-209ENST00000550020 PER1O15534 1290 aaPredicted RBP12.01□□□□□ -0.49
TMEM116-209ENST00000550020 PANK3Q9H999 370 aa12□□□□□ -0.49
TMEM116-209ENST00000550020 KNSTRNQ9Y448 316 aa12□□□□□ -0.49
TMEM116-209ENST00000550020 MYT1Q01538 1121 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms