RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 DIP2CQ9Y2E4 1556 aa11.09□□□□□ -0.63
LIMA1-204ENST00000549064 UBAP1LF5GYI3 381 aa11.09□□□□□ -0.63
LIMA1-204ENST00000549064 PLEKHG5O94827 1062 aa11.08□□□□□ -0.64
LIMA1-204ENST00000549064 ZNF335Q9H4Z2 1342 aaPredicted RBP11.08□□□□□ -0.64
LIMA1-204ENST00000549064 CAMSAP1Q5T5Y3 1602 aa11.07□□□□□ -0.64
LIMA1-204ENST00000549064 ABCA6Q8N139 1617 aa11.07□□□□□ -0.64
LIMA1-204ENST00000549064 ZBTB47Q9UFB7 747 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-204ENST00000549064 KDM5CP41229 1560 aa11.06□□□□□ -0.64
LIMA1-204ENST00000549064 TRAPPC8Q9Y2L5 1435 aa11.05□□□□□ -0.64
LIMA1-204ENST00000549064 KIF14Q15058 1648 aa11.05□□□□□ -0.64
LIMA1-204ENST00000549064 ZNF518AQ6AHZ1 1483 aa11.05□□□□□ -0.64
LIMA1-204ENST00000549064 REREQ9P2R6 1566 aa11.04□□□□□ -0.64
LIMA1-204ENST00000549064 AFAP1Q8N556 730 aa11.04□□□□□ -0.64
LIMA1-204ENST00000549064 MYT1LQ9UL68 1186 aa11.04□□□□□ -0.64
LIMA1-204ENST00000549064 NCKAP5LQ9HCH0 1330 aa11.04□□□□□ -0.64
LIMA1-204ENST00000549064 EFCAB2Q5VUJ9 269 aa11.03□□□□□ -0.64
LIMA1-204ENST00000549064 SUPT6HQ7KZ85 1726 aaKnown RBP11.03□□□□□ -0.64
LIMA1-204ENST00000549064 HSPA1LP34931 641 aa11.02□□□□□ -0.65
LIMA1-204ENST00000549064 ARHGAP5Q13017 1502 aa11.01□□□□□ -0.65
LIMA1-204ENST00000549064 ESF1Q9H501 851 aaKnown RBP11.01□□□□□ -0.65
LIMA1-204ENST00000549064 AGLP35573 1532 aa11□□□□□ -0.65
LIMA1-204ENST00000549064 CDC42BPBQ9Y5S2 1711 aa10.99□□□□□ -0.65
LIMA1-204ENST00000549064 MYO3AQ8NEV4 1616 aa10.98□□□□□ -0.65
LIMA1-204ENST00000549064 MROH2AA6NES4 1674 aa10.98□□□□□ -0.65
LIMA1-204ENST00000549064 ZNF142P52746 1687 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-204ENST00000549064 PIP4K2BP78356 416 aa10.98□□□□□ -0.65
LIMA1-204ENST00000549064 HS6ST3Q8IZP7 471 aa10.98□□□□□ -0.65
LIMA1-204ENST00000549064 MLH3Q9UHC1 1453 aa10.98□□□□□ -0.65
LIMA1-204ENST00000549064 KIDINS220Q9ULH0 1771 aa10.98□□□□□ -0.65
LIMA1-204ENST00000549064 POTEDQ86YR6 584 aa10.97□□□□□ -0.65
LIMA1-204ENST00000549064 RNF25Q96BH1 459 aaPredicted RBP10.97□□□□□ -0.65
LIMA1-204ENST00000549064 CNTLNQ9NXG0 1405 aa10.97□□□□□ -0.65
LIMA1-204ENST00000549064 ITSN2Q9NZM3 1697 aa10.97□□□□□ -0.65
LIMA1-204ENST00000549064 CLTCQ00610 1675 aaKnown RBP10.96□□□□□ -0.65
LIMA1-204ENST00000549064 NPATQ14207 1427 aa10.96□□□□□ -0.65
LIMA1-204ENST00000549064 ATP1B4Q9UN42 357 aaPredicted RBP10.96□□□□□ -0.65
LIMA1-204ENST00000549064 LRRIQ1Q96JM4 1722 aa10.95□□□□□ -0.66
LIMA1-204ENST00000549064 CEP170BQ9Y4F5 1589 aaPredicted RBP10.95□□□□□ -0.66
LIMA1-204ENST00000549064 ABCC1P33527 1531 aa10.95□□□□□ -0.66
LIMA1-204ENST00000549064 TCOF1Q13428 1488 aaKnown RBP10.95□□□□□ -0.66
LIMA1-204ENST00000549064 PLA2R1Q13018 1463 aa10.94□□□□□ -0.66
LIMA1-204ENST00000549064 ZMYM3Q14202 1370 aa10.94□□□□□ -0.66
LIMA1-204ENST00000549064 PREX2Q70Z35 1606 aa10.93□□□□□ -0.66
LIMA1-204ENST00000549064 TROQ12816 1431 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-204ENST00000549064 GSE1Q14687 1217 aa10.92□□□□□ -0.66
LIMA1-204ENST00000549064 ALKQ9UM73 1620 aa10.91□□□□□ -0.66
LIMA1-204ENST00000549064 NBR1Q14596 966 aa10.91□□□□□ -0.66
LIMA1-204ENST00000549064 POLR1AO95602 1720 aaPredicted RBP10.9□□□□□ -0.66
LIMA1-204ENST00000549064 TOM1O60784 492 aa10.9□□□□□ -0.66
LIMA1-204ENST00000549064 PTPRKQ15262 1439 aa10.9□□□□□ -0.66
LIMA1-204ENST00000549064 NUBP1P53384 320 aa10.89□□□□□ -0.67
LIMA1-204ENST00000549064 SAMD9LQ8IVG5 1584 aa10.89□□□□□ -0.67
LIMA1-204ENST00000549064 NEURL4Q96JN8 1562 aa10.89□□□□□ -0.67
LIMA1-204ENST00000549064 CDC42BPAQ5VT25 1732 aa10.89□□□□□ -0.67
LIMA1-204ENST00000549064 CPS1P31327 1500 aa10.89□□□□□ -0.67
LIMA1-204ENST00000549064 DNMT1P26358 1616 aaKnown RBP10.88□□□□□ -0.67
LIMA1-204ENST00000549064 CLIP1P30622 1438 aa10.88□□□□□ -0.67
LIMA1-204ENST00000549064 NKX1-1Q15270 411 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-204ENST00000549064 CDK11AQ9UQ88 783 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-204ENST00000549064 DCAF8Q5TAQ9 597 aa10.87□□□□□ -0.67
LIMA1-204ENST00000549064 SHANK2Q9UPX8 1470 aa10.87□□□□□ -0.67
LIMA1-204ENST00000549064 FMN1Q68DA7 1419 aa10.86□□□□□ -0.67
LIMA1-204ENST00000549064 A2ML1A8K2U0 1454 aa10.86□□□□□ -0.67
LIMA1-204ENST00000549064 RIOK3O14730 519 aaKnown RBP10.85□□□□□ -0.67
LIMA1-204ENST00000549064 RGS17Q9UGC6 210 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-204ENST00000549064 ARHGAP35Q9NRY4 1499 aa10.85□□□□□ -0.67
LIMA1-204ENST00000549064 PLXNC1O60486 1568 aa10.85□□□□□ -0.67
LIMA1-204ENST00000549064 VWDEQ8N2E2 1590 aa10.85□□□□□ -0.67
LIMA1-204ENST00000549064 SYCP2Q9BX26 1530 aa10.84□□□□□ -0.67
LIMA1-204ENST00000549064 ATP7AQ04656 1500 aa10.84□□□□□ -0.67
LIMA1-204ENST00000549064 STRCP1A6NGW2 1772 aa10.83□□□□□ -0.68
LIMA1-204ENST00000549064 INO80Q9ULG1 1556 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-204ENST00000549064 GGT6Q6P531 493 aa10.83□□□□□ -0.68
LIMA1-204ENST00000549064 EEA1Q15075 1411 aa10.83□□□□□ -0.68
LIMA1-204ENST00000549064 ZNF777Q9ULD5 760 aaPredicted RBP10.82□□□□□ -0.68
LIMA1-204ENST00000549064 SPAG9O60271 1321 aaKnown RBP10.82□□□□□ -0.68
LIMA1-204ENST00000549064 A2MP01023 1474 aa10.81□□□□□ -0.68
LIMA1-204ENST00000549064 GTPBP6O43824 516 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-204ENST00000549064 SETD1AO15047 1707 aaKnown RBP10.81□□□□□ -0.68
LIMA1-204ENST00000549064 HNRNPMP52272 730 aaKnown RBP eCLIP10.8□□□□□ -0.68
LIMA1-204ENST00000549064 STK25O00506 426 aa10.79□□□□□ -0.68
LIMA1-204ENST00000549064 RNF17Q9BXT8 1623 aaKnown RBP10.79□□□□□ -0.68
LIMA1-204ENST00000549064 ADGBQ8N7X0 1667 aa10.79□□□□□ -0.68
LIMA1-204ENST00000549064 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.78□□□□□ -0.68
LIMA1-204ENST00000549064 FBXO31Q5XUX0 539 aaPredicted RBP10.78□□□□□ -0.68
LIMA1-204ENST00000549064 IQGAP1P46940 1657 aa10.77□□□□□ -0.69
LIMA1-204ENST00000549064 POTEAQ6S8J7 498 aa10.77□□□□□ -0.69
LIMA1-204ENST00000549064 FAM212AQ96EL1 285 aa10.77□□□□□ -0.69
LIMA1-204ENST00000549064 LRRC7Q96NW7 1537 aa10.77□□□□□ -0.69
LIMA1-204ENST00000549064 TNRQ92752 1358 aa10.77□□□□□ -0.69
LIMA1-204ENST00000549064 NPHP4O75161 1426 aaPredicted RBP10.76□□□□□ -0.69
LIMA1-204ENST00000549064 VGFO15240 615 aaPredicted RBP10.76□□□□□ -0.69
LIMA1-204ENST00000549064 UBTFP17480 764 aaKnown RBP10.76□□□□□ -0.69
LIMA1-204ENST00000549064 SPDYE1Q8NFV5 336 aaPredicted RBP10.76□□□□□ -0.69
LIMA1-204ENST00000549064 CREBZFQ9NS37 354 aa10.76□□□□□ -0.69
LIMA1-204ENST00000549064 DEPDC5O75140 1603 aa10.76□□□□□ -0.69
LIMA1-204ENST00000549064 GPATCH8Q9UKJ3 1502 aaKnown RBP10.75□□□□□ -0.69
LIMA1-204ENST00000549064 SYNMO15061 1565 aa10.75□□□□□ -0.69
LIMA1-204ENST00000549064 CACNB1Q02641 598 aaPredicted RBP10.75□□□□□ -0.69
LIMA1-204ENST00000549064 ANKLE2Q86XL3 938 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms