RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ABCC10Q5T3U5 1492 aa20.12■□□□□ 0.81
USP28-214ENST00000545540 CCDC144AA2RUR9 1427 aa20.12■□□□□ 0.81
USP28-214ENST00000545540 NOP58Q9Y2X3 529 aaKnown RBP20.11■□□□□ 0.81
USP28-214ENST00000545540 ITSN2Q9NZM3 1697 aa20.11■□□□□ 0.81
USP28-214ENST00000545540 RALGAPBQ86X10 1494 aa20.11■□□□□ 0.81
USP28-214ENST00000545540 RRP1P56182 461 aaKnown RBP20.11■□□□□ 0.81
USP28-214ENST00000545540 DISP3Q9P2K9 1392 aa20.1■□□□□ 0.81
USP28-214ENST00000545540 CDC42BPAQ5VT25 1732 aa20.1■□□□□ 0.81
USP28-214ENST00000545540 RALBP1Q15311 655 aa20.1■□□□□ 0.81
USP28-214ENST00000545540 MYT1LQ9UL68 1186 aa20.1■□□□□ 0.81
USP28-214ENST00000545540 ADGBQ8N7X0 1667 aa20.09■□□□□ 0.81
USP28-214ENST00000545540 NLRP13Q86W25 1043 aa20.09■□□□□ 0.81
USP28-214ENST00000545540 NUP160Q12769 1436 aa20.08■□□□□ 0.81
USP28-214ENST00000545540 PER1O15534 1290 aaPredicted RBP20.08■□□□□ 0.81
USP28-214ENST00000545540 KTN1Q86UP2 1357 aaKnown RBP20.08■□□□□ 0.8
USP28-214ENST00000545540 UHRF1BP1Q6BDS2 1440 aa20.07■□□□□ 0.8
USP28-214ENST00000545540 RNF123Q5XPI4 1314 aa20.07■□□□□ 0.8
USP28-214ENST00000545540 SENP3Q9H4L4 574 aaPredicted RBP20.06■□□□□ 0.8
USP28-214ENST00000545540 ARID4BQ4LE39 1312 aaPredicted RBP20.06■□□□□ 0.8
USP28-214ENST00000545540 PLEKHH2Q8IVE3 1493 aa20.05■□□□□ 0.8
USP28-214ENST00000545540 TESK2Q96S53 571 aa20.05■□□□□ 0.8
USP28-214ENST00000545540 BRD4O60885 1362 aaPredicted RBP20.05■□□□□ 0.8
USP28-214ENST00000545540 ANP32AP39687 249 aaKnown RBP20.04■□□□□ 0.8
USP28-214ENST00000545540 CROCC2H7BZ55 1655 aa20.04■□□□□ 0.8
USP28-214ENST00000545540 C20orf194Q5TEA3 1177 aa20.03■□□□□ 0.8
USP28-214ENST00000545540 FAM135AQ9P2D6 1515 aa20.03■□□□□ 0.8
USP28-214ENST00000545540 LRPPRCP42704 1394 aaKnown RBP20.03■□□□□ 0.8
USP28-214ENST00000545540 AFAP1Q8N556 730 aa20.03■□□□□ 0.8
USP28-214ENST00000545540 ADAMTS8Q9UP79 889 aa20.02■□□□□ 0.8
USP28-214ENST00000545540 POLR1AO95602 1720 aaPredicted RBP20.02■□□□□ 0.8
USP28-214ENST00000545540 ABCA8O94911 1581 aa20.02■□□□□ 0.8
USP28-214ENST00000545540 DEKP35659 375 aaKnown RBP20.02■□□□□ 0.8
USP28-214ENST00000545540 PLA2R1Q13018 1463 aa20.02■□□□□ 0.8
USP28-214ENST00000545540 PRAG1Q86YV5 1406 aa20.01■□□□□ 0.79
USP28-214ENST00000545540 SYCP2Q9BX26 1530 aa20.01■□□□□ 0.79
USP28-214ENST00000545540 ARHGAP5Q13017 1502 aa20■□□□□ 0.79
USP28-214ENST00000545540 CRBNQ96SW2 442 aa19.99■□□□□ 0.79
USP28-214ENST00000545540 ZBTB47Q9UFB7 747 aaPredicted RBP19.99■□□□□ 0.79
USP28-214ENST00000545540 CCDC141Q6ZP82 1450 aa19.99■□□□□ 0.79
USP28-214ENST00000545540 CCDC146Q8IYE0 955 aa19.99■□□□□ 0.79
USP28-214ENST00000545540 LAS1LQ9Y4W2 734 aaKnown RBP19.99■□□□□ 0.79
USP28-214ENST00000545540 ADCY10Q96PN6 1610 aa19.98■□□□□ 0.79
USP28-214ENST00000545540 SAMD9LQ8IVG5 1584 aa19.98■□□□□ 0.79
USP28-214ENST00000545540 TMF1P82094 1093 aa19.98■□□□□ 0.79
USP28-214ENST00000545540 IPO9Q96P70 1041 aaKnown RBP19.97■□□□□ 0.79
USP28-214ENST00000545540 A2MP01023 1474 aa19.97■□□□□ 0.79
USP28-214ENST00000545540 PARD3Q8TEW0 1356 aa19.96■□□□□ 0.79
USP28-214ENST00000545540 SHANK2Q9UPX8 1470 aa19.94■□□□□ 0.78
USP28-214ENST00000545540 KDM5DQ9BY66 1539 aa19.93■□□□□ 0.78
USP28-214ENST00000545540 PDE4AP27815 886 aa19.93■□□□□ 0.78
USP28-214ENST00000545540 KNSTRNQ9Y448 316 aa19.93■□□□□ 0.78
USP28-214ENST00000545540 ARHGEF12Q9NZN5 1544 aa19.93■□□□□ 0.78
USP28-214ENST00000545540 ERCC6L2Q5T890 1561 aa19.92■□□□□ 0.78
USP28-214ENST00000545540 ERBINQ96RT1 1412 aa19.91■□□□□ 0.78
USP28-214ENST00000545540 SLC4A3P48751 1232 aa19.9■□□□□ 0.78
USP28-214ENST00000545540 CDC42BPBQ9Y5S2 1711 aa19.9■□□□□ 0.78
USP28-214ENST00000545540 TNNT2P45379 298 aaPredicted RBP19.9■□□□□ 0.78
USP28-214ENST00000545540 RSPH4AQ5TD94 716 aa19.9■□□□□ 0.78
USP28-214ENST00000545540 WDR43Q15061 677 aaKnown RBP eCLIP19.89■□□□□ 0.77
USP28-214ENST00000545540 TTC37Q6PGP7 1564 aa19.89■□□□□ 0.77
USP28-214ENST00000545540 CHGAP10645 457 aaKnown RBP19.88■□□□□ 0.77
USP28-214ENST00000545540 PPP2R1AP30153 589 aa19.87■□□□□ 0.77
USP28-214ENST00000545540 EFCAB2Q5VUJ9 269 aa19.86■□□□□ 0.77
USP28-214ENST00000545540 TRAPPC8Q9Y2L5 1435 aa19.85■□□□□ 0.77
USP28-214ENST00000545540 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.84■□□□□ 0.77
USP28-214ENST00000545540 KIF3BO15066 747 aa19.84■□□□□ 0.77
USP28-214ENST00000545540 NEUROD2Q15784 382 aa19.84■□□□□ 0.77
USP28-214ENST00000545540 CFAP70Q5T0N1 1121 aa19.84■□□□□ 0.77
USP28-214ENST00000545540 SPINK5Q9NQ38 1064 aaPredicted RBP19.84■□□□□ 0.77
USP28-214ENST00000545540 SPAG9O60271 1321 aaKnown RBP19.83■□□□□ 0.77
USP28-214ENST00000545540 PLEKHH1Q9ULM0 1364 aa19.83■□□□□ 0.77
USP28-214ENST00000545540 TRPM1Q7Z4N2 1603 aa19.82■□□□□ 0.76
USP28-214ENST00000545540 RGS3P49796 1198 aa19.82■□□□□ 0.76
USP28-214ENST00000545540 PDE3BQ13370 1112 aa19.82■□□□□ 0.76
USP28-214ENST00000545540 RTL5Q5HYW3 569 aaPredicted RBP19.82■□□□□ 0.76
USP28-214ENST00000545540 COL17A1Q9UMD9 1497 aaPredicted RBP19.82■□□□□ 0.76
USP28-214ENST00000545540 APAF1O14727 1248 aa19.82■□□□□ 0.76
USP28-214ENST00000545540 BACH2Q9BYV9 841 aa19.81■□□□□ 0.76
USP28-214ENST00000545540 MAGI2Q86UL8 1455 aa19.81■□□□□ 0.76
USP28-214ENST00000545540 ARHGEF5Q12774 1597 aa19.81■□□□□ 0.76
USP28-214ENST00000545540 NUTM2DQ5VT03 806 aaPredicted RBP19.81■□□□□ 0.76
USP28-214ENST00000545540 TCERG1O14776 1098 aaKnown RBP19.8■□□□□ 0.76
USP28-214ENST00000545540 AMER1Q5JTC6 1135 aaPredicted RBP19.8■□□□□ 0.76
USP28-214ENST00000545540 DMRT2Q9Y5R5 561 aa19.79■□□□□ 0.76
USP28-214ENST00000545540 GPRASP1Q5JY77 1395 aa19.79■□□□□ 0.76
USP28-214ENST00000545540 BCAR3O75815 825 aa19.78■□□□□ 0.76
USP28-214ENST00000545540 PREX2Q70Z35 1606 aa19.78■□□□□ 0.76
USP28-214ENST00000545540 DUSP27Q5VZP5 1158 aa19.77■□□□□ 0.76
USP28-214ENST00000545540 RRP7AQ9Y3A4 280 aaKnown RBP19.76■□□□□ 0.75
USP28-214ENST00000545540 NEFMP07197 916 aa19.75■□□□□ 0.75
USP28-214ENST00000545540 E9PCH4 1651 aa19.75■□□□□ 0.75
USP28-214ENST00000545540 GOLGA2Q08379 1002 aa19.74■□□□□ 0.75
USP28-214ENST00000545540 ADGRF5Q8IZF2 1346 aa19.74■□□□□ 0.75
USP28-214ENST00000545540 TRAK1Q9UPV9 953 aa19.72■□□□□ 0.75
USP28-214ENST00000545540 CARD14Q9BXL6 1004 aa19.72■□□□□ 0.75
USP28-214ENST00000545540 TMEM132EQ6IEE7 984 aa19.71■□□□□ 0.75
USP28-214ENST00000545540 RTN4Q9NQC3 1192 aaKnown RBP19.71■□□□□ 0.75
USP28-214ENST00000545540 PRDM15P57071 1507 aaPredicted RBP19.71■□□□□ 0.75
USP28-214ENST00000545540 WDR7Q9Y4E6 1490 aa19.71■□□□□ 0.75
USP28-214ENST00000545540 SAFB2Q14151 953 aaKnown RBP eCLIP19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms