RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 CEP170BQ9Y4F5 1589 aaPredicted RBP8.65□□□□□ -1.02
CLSTN3-215ENST00000544584 NCOA2Q15596 1464 aa8.65□□□□□ -1.02
CLSTN3-215ENST00000544584 RTEL1-TNFRSF6BF6WH68 1400 aa8.65□□□□□ -1.02
CLSTN3-215ENST00000544584 CDC42BPAQ5VT25 1732 aa8.65□□□□□ -1.03
CLSTN3-215ENST00000544584 MIA2Q96PC5 1412 aa8.64□□□□□ -1.03
CLSTN3-215ENST00000544584 SYCP2Q9BX26 1530 aa8.64□□□□□ -1.03
CLSTN3-215ENST00000544584 CCDC141Q6ZP82 1450 aa8.63□□□□□ -1.03
CLSTN3-215ENST00000544584 SHANK2Q9UPX8 1470 aa8.63□□□□□ -1.03
CLSTN3-215ENST00000544584 MYOM3Q5VTT5 1437 aa8.63□□□□□ -1.03
CLSTN3-215ENST00000544584 NEURL4Q96JN8 1562 aa8.62□□□□□ -1.03
CLSTN3-215ENST00000544584 SAMD9LQ8IVG5 1584 aa8.61□□□□□ -1.03
CLSTN3-215ENST00000544584 ATP7AQ04656 1500 aa8.61□□□□□ -1.03
CLSTN3-215ENST00000544584 POTEAQ6S8J7 498 aa8.61□□□□□ -1.03
CLSTN3-215ENST00000544584 RNF17Q9BXT8 1623 aaKnown RBP8.61□□□□□ -1.03
CLSTN3-215ENST00000544584 VWDEQ8N2E2 1590 aa8.61□□□□□ -1.03
CLSTN3-215ENST00000544584 DHX29Q7Z478 1369 aaKnown RBP8.61□□□□□ -1.03
CLSTN3-215ENST00000544584 ZNF644Q9H582 1327 aaPredicted RBP8.6□□□□□ -1.03
CLSTN3-215ENST00000544584 A2MP01023 1474 aa8.6□□□□□ -1.03
CLSTN3-215ENST00000544584 CAMSAP2Q08AD1 1489 aa8.6□□□□□ -1.03
CLSTN3-215ENST00000544584 KANK4Q5T7N3 995 aaPredicted RBP8.6□□□□□ -1.03
CLSTN3-215ENST00000544584 GGT6Q6P531 493 aa8.6□□□□□ -1.03
CLSTN3-215ENST00000544584 DNMT1P26358 1616 aaKnown RBP8.58□□□□□ -1.04
CLSTN3-215ENST00000544584 MBD5Q9P267 1494 aa8.58□□□□□ -1.04
CLSTN3-215ENST00000544584 KIF3BO15066 747 aa8.58□□□□□ -1.04
CLSTN3-215ENST00000544584 STRCP1A6NGW2 1772 aa8.58□□□□□ -1.04
CLSTN3-215ENST00000544584 KIDINS220Q9ULH0 1771 aa8.58□□□□□ -1.04
CLSTN3-215ENST00000544584 WASHC2CQ9Y4E1 1318 aa8.57□□□□□ -1.04
CLSTN3-215ENST00000544584 SYNMO15061 1565 aa8.57□□□□□ -1.04
CLSTN3-215ENST00000544584 ZMYM3Q14202 1370 aa8.57□□□□□ -1.04
CLSTN3-215ENST00000544584 ARHGEF5Q12774 1597 aa8.56□□□□□ -1.04
CLSTN3-215ENST00000544584 CLTCQ00610 1675 aaKnown RBP8.56□□□□□ -1.04
CLSTN3-215ENST00000544584 ADGBQ8N7X0 1667 aa8.56□□□□□ -1.04
CLSTN3-215ENST00000544584 FAM50AQ14320 339 aaKnown RBP8.56□□□□□ -1.04
CLSTN3-215ENST00000544584 UPF1Q92900 1129 aaKnown RBP eCLIP8.56□□□□□ -1.04
CLSTN3-215ENST00000544584 ANKRD30AQ9BXX3 1397 aa8.56□□□□□ -1.04
CLSTN3-215ENST00000544584 A2ML1A8K2U0 1454 aa8.56□□□□□ -1.04
CLSTN3-215ENST00000544584 FAM135AQ9P2D6 1515 aa8.55□□□□□ -1.04
CLSTN3-215ENST00000544584 INO80Q9ULG1 1556 aaPredicted RBP8.55□□□□□ -1.04
CLSTN3-215ENST00000544584 FGD6Q6ZV73 1430 aa8.54□□□□□ -1.04
CLSTN3-215ENST00000544584 KANK1Q14678 1352 aa8.54□□□□□ -1.04
CLSTN3-215ENST00000544584 DEPDC5O75140 1603 aa8.54□□□□□ -1.04
CLSTN3-215ENST00000544584 LRRC7Q96NW7 1537 aa8.54□□□□□ -1.04
CLSTN3-215ENST00000544584 XIRP1Q702N8 1843 aaKnown RBP8.52□□□□□ -1.04
CLSTN3-215ENST00000544584 MED14O60244 1454 aa8.52□□□□□ -1.05
CLSTN3-215ENST00000544584 RRP7BPQ9NSQ0 103 aa8.52□□□□□ -1.05
CLSTN3-215ENST00000544584 PLXNC1O60486 1568 aa8.52□□□□□ -1.05
CLSTN3-215ENST00000544584 PTPN23Q9H3S7 1636 aa8.51□□□□□ -1.05
CLSTN3-215ENST00000544584 KIF15Q9NS87 1388 aa8.51□□□□□ -1.05
CLSTN3-215ENST00000544584 DUOX2Q9NRD8 1548 aa8.51□□□□□ -1.05
CLSTN3-215ENST00000544584 IQGAP1P46940 1657 aa8.51□□□□□ -1.05
CLSTN3-215ENST00000544584 ERBINQ96RT1 1412 aa8.51□□□□□ -1.05
CLSTN3-215ENST00000544584 MAST1Q9Y2H9 1570 aa8.51□□□□□ -1.05
CLSTN3-215ENST00000544584 DAPK1P53355 1430 aa8.5□□□□□ -1.05
CLSTN3-215ENST00000544584 THEMISQ8N1K5 641 aaPredicted RBP8.49□□□□□ -1.05
CLSTN3-215ENST00000544584 SENP3Q9H4L4 574 aaPredicted RBP8.49□□□□□ -1.05
CLSTN3-215ENST00000544584 CHIC2Q9UKJ5 165 aa8.49□□□□□ -1.05
CLSTN3-215ENST00000544584 KDM5DQ9BY66 1539 aa8.49□□□□□ -1.05
CLSTN3-215ENST00000544584 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.48□□□□□ -1.05
CLSTN3-215ENST00000544584 ABCC5O15440 1437 aa8.48□□□□□ -1.05
CLSTN3-215ENST00000544584 FAM135BQ49AJ0 1406 aa8.48□□□□□ -1.05
CLSTN3-215ENST00000544584 TNRQ92752 1358 aa8.48□□□□□ -1.05
CLSTN3-215ENST00000544584 NPHP4O75161 1426 aaPredicted RBP8.47□□□□□ -1.05
CLSTN3-215ENST00000544584 ZC3H13Q5T200 1668 aaKnown RBP8.47□□□□□ -1.05
CLSTN3-215ENST00000544584 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.47□□□□□ -1.05
CLSTN3-215ENST00000544584 STAG3Q9UJ98 1225 aa8.47□□□□□ -1.05
CLSTN3-215ENST00000544584 ACIN1Q9UKV3 1341 aaKnown RBP8.47□□□□□ -1.05
CLSTN3-215ENST00000544584 EIF2AK4Q9P2K8 1649 aaKnown RBP8.47□□□□□ -1.05
CLSTN3-215ENST00000544584 PZPP20742 1482 aa8.46□□□□□ -1.05
CLSTN3-215ENST00000544584 ANKLE2Q86XL3 938 aa8.46□□□□□ -1.06
CLSTN3-215ENST00000544584 ROCK1Q13464 1354 aa8.46□□□□□ -1.06
CLSTN3-215ENST00000544584 NLRP1Q9C000 1473 aa8.45□□□□□ -1.06
CLSTN3-215ENST00000544584 CDK12Q9NYV4 1490 aaPredicted RBP8.45□□□□□ -1.06
CLSTN3-215ENST00000544584 HDGFP51858 240 aaKnown RBP8.45□□□□□ -1.06
CLSTN3-215ENST00000544584 ROBO1Q9Y6N7 1651 aa8.45□□□□□ -1.06
CLSTN3-215ENST00000544584 EID1Q9Y6B2 187 aa8.44□□□□□ -1.06
CLSTN3-215ENST00000544584 ANKRD50Q9ULJ7 1429 aa8.44□□□□□ -1.06
CLSTN3-215ENST00000544584 ADGRL2O95490 1459 aa8.44□□□□□ -1.06
CLSTN3-215ENST00000544584 ITGAEP38570 1179 aa8.43□□□□□ -1.06
CLSTN3-215ENST00000544584 SLC52A1Q9NWF4 448 aa8.43□□□□□ -1.06
CLSTN3-215ENST00000544584 ARHGAP31Q2M1Z3 1444 aa8.43□□□□□ -1.06
CLSTN3-215ENST00000544584 FBXO31Q5XUX0 539 aaPredicted RBP8.42□□□□□ -1.06
CLSTN3-215ENST00000544584 UGGT1Q9NYU2 1555 aa8.42□□□□□ -1.06
CLSTN3-215ENST00000544584 CROCC2H7BZ55 1655 aa8.42□□□□□ -1.06
CLSTN3-215ENST00000544584 PHLPP1O60346 1717 aa8.41□□□□□ -1.06
CLSTN3-215ENST00000544584 ABCC3O15438 1527 aa8.41□□□□□ -1.06
CLSTN3-215ENST00000544584 PPARGC1BQ86YN6 1023 aaKnown RBP8.41□□□□□ -1.06
CLSTN3-215ENST00000544584 PRDM15P57071 1507 aaPredicted RBP8.39□□□□□ -1.07
CLSTN3-215ENST00000544584 JCADQ9P266 1359 aa8.39□□□□□ -1.07
CLSTN3-215ENST00000544584 TRIM52Q96A61 297 aa8.39□□□□□ -1.07
CLSTN3-215ENST00000544584 LRP6O75581 1613 aa8.39□□□□□ -1.07
CLSTN3-215ENST00000544584 COL16A1Q07092 1604 aaPredicted RBP8.39□□□□□ -1.07
CLSTN3-215ENST00000544584 RPRD2Q5VT52 1461 aaKnown RBP8.38□□□□□ -1.07
CLSTN3-215ENST00000544584 ZNF772Q68DY9 489 aaPredicted RBP8.38□□□□□ -1.07
CLSTN3-215ENST00000544584 SETBP1Q9Y6X0 1596 aa8.38□□□□□ -1.07
CLSTN3-215ENST00000544584 ERVK-7P63135 1459 aa8.38□□□□□ -1.07
CLSTN3-215ENST00000544584 RRBP1Q9P2E9 1410 aaKnown RBP8.37□□□□□ -1.07
CLSTN3-215ENST00000544584 NUP155O75694 1391 aa8.37□□□□□ -1.07
CLSTN3-215ENST00000544584 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.37□□□□□ -1.07
CLSTN3-215ENST00000544584 LMTK2Q8IWU2 1503 aa8.37□□□□□ -1.07
CLSTN3-215ENST00000544584 SHPRHQ149N8 1683 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms