RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 MYT1LQ9UL68 1186 aa20.45■□□□□ 0.86
VPS33A-209ENST00000544349 KDM5CP41229 1560 aa20.44■□□□□ 0.86
VPS33A-209ENST00000544349 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.44■□□□□ 0.86
VPS33A-209ENST00000544349 FAM69CQ0P6D2 419 aa20.42■□□□□ 0.86
VPS33A-209ENST00000544349 L3MBTL2Q969R5 705 aa20.42■□□□□ 0.86
VPS33A-209ENST00000544349 DHX29Q7Z478 1369 aaKnown RBP20.41■□□□□ 0.86
VPS33A-209ENST00000544349 TEX14Q8IWB6 1497 aa20.4■□□□□ 0.86
VPS33A-209ENST00000544349 MLH3Q9UHC1 1453 aa20.4■□□□□ 0.86
VPS33A-209ENST00000544349 DEPDC5O75140 1603 aa20.38■□□□□ 0.85
VPS33A-209ENST00000544349 HECW2Q9P2P5 1572 aa20.38■□□□□ 0.85
VPS33A-209ENST00000544349 EIF2AK4Q9P2K8 1649 aaKnown RBP20.38■□□□□ 0.85
VPS33A-209ENST00000544349 RAPGEF3O95398 923 aa20.35■□□□□ 0.85
VPS33A-209ENST00000544349 RICTORQ6R327 1708 aa20.34■□□□□ 0.85
VPS33A-209ENST00000544349 KIF3BO15066 747 aa20.34■□□□□ 0.85
VPS33A-209ENST00000544349 A2MP01023 1474 aa20.34■□□□□ 0.85
VPS33A-209ENST00000544349 PPRC1Q5VV67 1664 aaKnown RBP20.33■□□□□ 0.84
VPS33A-209ENST00000544349 TSPOAP1O95153 1857 aa20.32■□□□□ 0.84
VPS33A-209ENST00000544349 VWDEQ8N2E2 1590 aa20.31■□□□□ 0.84
VPS33A-209ENST00000544349 PLA2R1Q13018 1463 aa20.31■□□□□ 0.84
VPS33A-209ENST00000544349 ABCA6Q8N139 1617 aa20.3■□□□□ 0.84
VPS33A-209ENST00000544349 KIF13AQ9H1H9 1805 aa20.3■□□□□ 0.84
VPS33A-209ENST00000544349 PRDM15P57071 1507 aaPredicted RBP20.3■□□□□ 0.84
VPS33A-209ENST00000544349 KANK1Q14678 1352 aa20.3■□□□□ 0.84
VPS33A-209ENST00000544349 MROH1Q8NDA8 1641 aa20.29■□□□□ 0.84
VPS33A-209ENST00000544349 ATP10AO60312 1499 aa20.29■□□□□ 0.84
VPS33A-209ENST00000544349 FRMPD1Q5SYB0 1578 aa20.29■□□□□ 0.84
VPS33A-209ENST00000544349 CCDC144AA2RUR9 1427 aa20.28■□□□□ 0.84
VPS33A-209ENST00000544349 E9PCH4 1651 aa20.28■□□□□ 0.84
VPS33A-209ENST00000544349 NBPF8Q3BBV2 869 aa20.27■□□□□ 0.84
VPS33A-209ENST00000544349 TET3O43151 1660 aa20.27■□□□□ 0.84
VPS33A-209ENST00000544349 RNF17Q9BXT8 1623 aaKnown RBP20.26■□□□□ 0.83
VPS33A-209ENST00000544349 DIP2CQ9Y2E4 1556 aa20.25■□□□□ 0.83
VPS33A-209ENST00000544349 BCORL1Q5H9F3 1711 aa20.25■□□□□ 0.83
VPS33A-209ENST00000544349 HIRIP3Q9BW71 556 aaPredicted RBP20.23■□□□□ 0.83
VPS33A-209ENST00000544349 ZMYM4Q5VZL5 1548 aa20.22■□□□□ 0.83
VPS33A-209ENST00000544349 YEATS2Q9ULM3 1422 aa20.21■□□□□ 0.83
VPS33A-209ENST00000544349 PTPRTO14522 1441 aa20.2■□□□□ 0.82
VPS33A-209ENST00000544349 SPHKAPQ2M3C7 1700 aa20.2■□□□□ 0.82
VPS33A-209ENST00000544349 UHRF1BP1Q6BDS2 1440 aa20.2■□□□□ 0.82
VPS33A-209ENST00000544349 LMTK2Q8IWU2 1503 aa20.2■□□□□ 0.82
VPS33A-209ENST00000544349 TRPM2O94759 1503 aa20.18■□□□□ 0.82
VPS33A-209ENST00000544349 CEP152O94986 1710 aa20.17■□□□□ 0.82
VPS33A-209ENST00000544349 EIF4G2P78344 907 aaKnown RBP eCLIP20.17■□□□□ 0.82
VPS33A-209ENST00000544349 GGT6Q6P531 493 aa20.17■□□□□ 0.82
VPS33A-209ENST00000544349 DCAF11Q8TEB1 546 aa20.17■□□□□ 0.82
VPS33A-209ENST00000544349 EFCAB6Q5THR3 1501 aa20.17■□□□□ 0.82
VPS33A-209ENST00000544349 HSPA5P11021 654 aaKnown RBP20.16■□□□□ 0.82
VPS33A-209ENST00000544349 ZNF326Q5BKZ1 582 aaKnown RBP20.14■□□□□ 0.81
VPS33A-209ENST00000544349 KDM2AQ9Y2K7 1162 aa20.14■□□□□ 0.81
VPS33A-209ENST00000544349 RGL3Q3MIN7 710 aa20.14■□□□□ 0.81
VPS33A-209ENST00000544349 CLTCL1P53675 1640 aa20.12■□□□□ 0.81
VPS33A-209ENST00000544349 DDX10Q13206 875 aaKnown RBP20.11■□□□□ 0.81
VPS33A-209ENST00000544349 SPATA31E1Q6ZUB1 1445 aa20.11■□□□□ 0.81
VPS33A-209ENST00000544349 RALGAPBQ86X10 1494 aa20.11■□□□□ 0.81
VPS33A-209ENST00000544349 COL17A1Q9UMD9 1497 aaPredicted RBP20.11■□□□□ 0.81
VPS33A-209ENST00000544349 TRHP20396 242 aaPredicted RBP20.11■□□□□ 0.81
VPS33A-209ENST00000544349 ABCC3O15438 1527 aa20.1■□□□□ 0.81
VPS33A-209ENST00000544349 WASHC2CQ9Y4E1 1318 aa20.09■□□□□ 0.81
VPS33A-209ENST00000544349 PELP1Q8IZL8 1130 aaKnown RBP20.08■□□□□ 0.81
VPS33A-209ENST00000544349 REREQ9P2R6 1566 aa20.07■□□□□ 0.8
VPS33A-209ENST00000544349 NPATQ14207 1427 aa20.07■□□□□ 0.8
VPS33A-209ENST00000544349 PRAG1Q86YV5 1406 aa20.07■□□□□ 0.8
VPS33A-209ENST00000544349 CAMSAP1Q5T5Y3 1602 aa20.06■□□□□ 0.8
VPS33A-209ENST00000544349 ZC3H13Q5T200 1668 aaKnown RBP20.05■□□□□ 0.8
VPS33A-209ENST00000544349 NEURL4Q96JN8 1562 aa20.05■□□□□ 0.8
VPS33A-209ENST00000544349 TRPM1Q7Z4N2 1603 aa20.04■□□□□ 0.8
VPS33A-209ENST00000544349 AGLP35573 1532 aa20.03■□□□□ 0.8
VPS33A-209ENST00000544349 UGGT1Q9NYU2 1555 aa20.03■□□□□ 0.8
VPS33A-209ENST00000544349 CFAP65Q6ZU64 1925 aaKnown RBP20.03■□□□□ 0.8
VPS33A-209ENST00000544349 USP47Q96K76 1375 aa20.02■□□□□ 0.8
VPS33A-209ENST00000544349 CARD11Q9BXL7 1154 aa20.02■□□□□ 0.79
VPS33A-209ENST00000544349 KIF1BO60333 1816 aa20.02■□□□□ 0.79
VPS33A-209ENST00000544349 WASHC2AQ641Q2 1341 aa20.01■□□□□ 0.79
VPS33A-209ENST00000544349 ARHGAP31Q2M1Z3 1444 aa20■□□□□ 0.79
VPS33A-209ENST00000544349 CNTLNQ9NXG0 1405 aa20■□□□□ 0.79
VPS33A-209ENST00000544349 ARHGEF40Q8TER5 1519 aa20■□□□□ 0.79
VPS33A-209ENST00000544349 STAC3Q96MF2 364 aa20■□□□□ 0.79
VPS33A-209ENST00000544349 ROCK2O75116 1388 aaKnown RBP20■□□□□ 0.79
VPS33A-209ENST00000544349 SIGLEC1Q9BZZ2 1709 aa19.98■□□□□ 0.79
VPS33A-209ENST00000544349 NOS1P29475 1434 aa19.98■□□□□ 0.79
VPS33A-209ENST00000544349 C11orf95C9JLR9 678 aaPredicted RBP19.97■□□□□ 0.79
VPS33A-209ENST00000544349 POLR1AO95602 1720 aaPredicted RBP19.97■□□□□ 0.79
VPS33A-209ENST00000544349 GPRASP1Q5JY77 1395 aa19.96■□□□□ 0.79
VPS33A-209ENST00000544349 MADDQ8WXG6 1647 aa19.95■□□□□ 0.78
VPS33A-209ENST00000544349 NBPF1Q3BBV0 1214 aa19.95■□□□□ 0.78
VPS33A-209ENST00000544349 PPP6R1Q9UPN7 881 aa19.95■□□□□ 0.78
VPS33A-209ENST00000544349 CCDC7Q96M83 1385 aa19.95■□□□□ 0.78
VPS33A-209ENST00000544349 MROH2AA6NES4 1674 aa19.94■□□□□ 0.78
VPS33A-209ENST00000544349 LAMC1P11047 1609 aa19.94■□□□□ 0.78
VPS33A-209ENST00000544349 ADGRB3O60242 1522 aa19.94■□□□□ 0.78
VPS33A-209ENST00000544349 SYNMO15061 1565 aa19.92■□□□□ 0.78
VPS33A-209ENST00000544349 PIK3C2BO00750 1634 aa19.91■□□□□ 0.78
VPS33A-209ENST00000544349 IFT172Q9UG01 1749 aa19.91■□□□□ 0.78
VPS33A-209ENST00000544349 KIF7Q2M1P5 1343 aa19.91■□□□□ 0.78
VPS33A-209ENST00000544349 MYOM2P54296 1465 aa19.9■□□□□ 0.78
VPS33A-209ENST00000544349 PREX1Q8TCU6 1659 aa19.89■□□□□ 0.78
VPS33A-209ENST00000544349 ST20-MTHFSA0A0A6YYL1 179 aa19.89■□□□□ 0.77
VPS33A-209ENST00000544349 CHGAP10645 457 aaKnown RBP19.88■□□□□ 0.77
VPS33A-209ENST00000544349 SUPT16HQ9Y5B9 1047 aaKnown RBP19.88■□□□□ 0.77
VPS33A-209ENST00000544349 CLTCQ00610 1675 aaKnown RBP19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms