RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 MRS2Q9HD23 443 aa24.49■■□□□ 1.51
PTPN6-222ENST00000543744 DUOX2Q9NRD8 1548 aa24.49■■□□□ 1.51
PTPN6-222ENST00000543744 POLR3GLQ9BT43 218 aa24.47■■□□□ 1.51
PTPN6-222ENST00000543744 BCANQ96GW7 911 aa24.47■■□□□ 1.51
PTPN6-222ENST00000543744 ERBINQ96RT1 1412 aa24.45■■□□□ 1.5
PTPN6-222ENST00000543744 IQGAP3Q86VI3 1631 aa24.45■■□□□ 1.5
PTPN6-222ENST00000543744 DHX29Q7Z478 1369 aaKnown RBP24.44■■□□□ 1.5
PTPN6-222ENST00000543744 ABCC1P33527 1531 aa24.44■■□□□ 1.5
PTPN6-222ENST00000543744 ROCK2O75116 1388 aaKnown RBP24.43■■□□□ 1.5
PTPN6-222ENST00000543744 FAM9BQ8IZU0 186 aa24.43■■□□□ 1.5
PTPN6-222ENST00000543744 PLA2R1Q13018 1463 aa24.43■■□□□ 1.5
PTPN6-222ENST00000543744 MAGI2Q86UL8 1455 aa24.4■■□□□ 1.5
PTPN6-222ENST00000543744 TRAPPC8Q9Y2L5 1435 aa24.4■■□□□ 1.5
PTPN6-222ENST00000543744 ST20-MTHFSA0A0A6YYL1 179 aa24.4■■□□□ 1.5
PTPN6-222ENST00000543744 PRAG1Q86YV5 1406 aa24.39■■□□□ 1.49
PTPN6-222ENST00000543744 RGL3Q3MIN7 710 aa24.38■■□□□ 1.49
PTPN6-222ENST00000543744 ARAP3Q8WWN8 1544 aa24.37■■□□□ 1.49
PTPN6-222ENST00000543744 ATP10AO60312 1499 aa24.35■■□□□ 1.49
PTPN6-222ENST00000543744 SPAG9O60271 1321 aaKnown RBP24.35■■□□□ 1.49
PTPN6-222ENST00000543744 TRPM1Q7Z4N2 1603 aa24.34■■□□□ 1.49
PTPN6-222ENST00000543744 A2MP01023 1474 aa24.33■■□□□ 1.49
PTPN6-222ENST00000543744 WDR7Q9Y4E6 1490 aa24.33■■□□□ 1.49
PTPN6-222ENST00000543744 RTEL1-TNFRSF6BF6WH68 1400 aa24.33■■□□□ 1.48
PTPN6-222ENST00000543744 ZBED9Q6R2W3 1325 aa24.32■■□□□ 1.48
PTPN6-222ENST00000543744 CNGB1Q14028 1251 aaPredicted RBP24.3■■□□□ 1.48
PTPN6-222ENST00000543744 AFAP1Q8N556 730 aa24.3■■□□□ 1.48
PTPN6-222ENST00000543744 TSHZ2Q9NRE2 1034 aa24.28■■□□□ 1.48
PTPN6-222ENST00000543744 GPRASP1Q5JY77 1395 aa24.28■■□□□ 1.48
PTPN6-222ENST00000543744 ZFYVE16Q7Z3T8 1539 aa24.27■■□□□ 1.48
PTPN6-222ENST00000543744 NBPF1Q3BBV0 1214 aa24.27■■□□□ 1.48
PTPN6-222ENST00000543744 FANCAO15360 1455 aa24.24■■□□□ 1.47
PTPN6-222ENST00000543744 EIF2AK4Q9P2K8 1649 aaKnown RBP24.24■■□□□ 1.47
PTPN6-222ENST00000543744 LAMC1P11047 1609 aa24.23■■□□□ 1.47
PTPN6-222ENST00000543744 ABCA9Q8IUA7 1624 aa24.22■■□□□ 1.47
PTPN6-222ENST00000543744 KTN1Q86UP2 1357 aaKnown RBP24.21■■□□□ 1.47
PTPN6-222ENST00000543744 PRDM15P57071 1507 aaPredicted RBP24.2■■□□□ 1.46
PTPN6-222ENST00000543744 E9PCH4 1651 aa24.19■■□□□ 1.46
PTPN6-222ENST00000543744 TMC1Q8TDI8 760 aa24.18■■□□□ 1.46
PTPN6-222ENST00000543744 ATP7AQ04656 1500 aa24.18■■□□□ 1.46
PTPN6-222ENST00000543744 RALBP1Q15311 655 aa24.18■■□□□ 1.46
PTPN6-222ENST00000543744 ASXL2Q76L83 1435 aa24.17■■□□□ 1.46
PTPN6-222ENST00000543744 ADGRL1O94910 1474 aa24.17■■□□□ 1.46
PTPN6-222ENST00000543744 INO80Q9ULG1 1556 aaPredicted RBP24.16■■□□□ 1.46
PTPN6-222ENST00000543744 IRX6P78412 446 aaPredicted RBP24.16■■□□□ 1.46
PTPN6-222ENST00000543744 PNISRQ8TF01 805 aaKnown RBP24.16■■□□□ 1.46
PTPN6-222ENST00000543744 DEPDC5O75140 1603 aa24.16■■□□□ 1.46
PTPN6-222ENST00000543744 ERICH6BQ5W0A0 696 aa24.15■■□□□ 1.46
PTPN6-222ENST00000543744 SCAPERQ9BY12 1400 aa24.15■■□□□ 1.46
PTPN6-222ENST00000543744 MYBBP1AQ9BQG0 1328 aaKnown RBP24.15■■□□□ 1.46
PTPN6-222ENST00000543744 TRPM2O94759 1503 aa24.15■■□□□ 1.46
PTPN6-222ENST00000543744 MYT1LQ9UL68 1186 aa24.15■■□□□ 1.46
PTPN6-222ENST00000543744 KANK1Q14678 1352 aa24.14■■□□□ 1.46
PTPN6-222ENST00000543744 TESK2Q96S53 571 aa24.13■■□□□ 1.45
PTPN6-222ENST00000543744 COL17A1Q9UMD9 1497 aaPredicted RBP24.13■■□□□ 1.45
PTPN6-222ENST00000543744 PTPRTO14522 1441 aa24.13■■□□□ 1.45
PTPN6-222ENST00000543744 BRD4O60885 1362 aaPredicted RBP24.12■■□□□ 1.45
PTPN6-222ENST00000543744 TET3O43151 1660 aa24.1■■□□□ 1.45
PTPN6-222ENST00000543744 KIF3BO15066 747 aa24.1■■□□□ 1.45
PTPN6-222ENST00000543744 DISP3Q9P2K9 1392 aa24.1■■□□□ 1.45
PTPN6-222ENST00000543744 SPHKAPQ2M3C7 1700 aa24.09■■□□□ 1.45
PTPN6-222ENST00000543744 STAC3Q96MF2 364 aa24.09■■□□□ 1.45
PTPN6-222ENST00000543744 RNF17Q9BXT8 1623 aaKnown RBP24.09■■□□□ 1.45
PTPN6-222ENST00000543744 TMF1P82094 1093 aa24.08■■□□□ 1.45
PTPN6-222ENST00000543744 VWDEQ8N2E2 1590 aa24.08■■□□□ 1.45
PTPN6-222ENST00000543744 SMG6Q86US8 1419 aaKnown RBP24.08■■□□□ 1.44
PTPN6-222ENST00000543744 NPM1P06748 294 aaKnown RBP eCLIP24.08■■□□□ 1.44
PTPN6-222ENST00000543744 OSCARQ8IYS5 282 aa24.07■■□□□ 1.44
PTPN6-222ENST00000543744 PER1O15534 1290 aaPredicted RBP24.06■■□□□ 1.44
PTPN6-222ENST00000543744 CEP152O94986 1710 aa24.06■■□□□ 1.44
PTPN6-222ENST00000543744 MADDQ8WXG6 1647 aa24.06■■□□□ 1.44
PTPN6-222ENST00000543744 LRPPRCP42704 1394 aaKnown RBP24.05■■□□□ 1.44
PTPN6-222ENST00000543744 PARD3Q8TEW0 1356 aa24.05■■□□□ 1.44
PTPN6-222ENST00000543744 CLTCL1P53675 1640 aa24.05■■□□□ 1.44
PTPN6-222ENST00000543744 WASHC2CQ9Y4E1 1318 aa24.04■■□□□ 1.44
PTPN6-222ENST00000543744 NLRP13Q86W25 1043 aa24.03■■□□□ 1.44
PTPN6-222ENST00000543744 PPP4R2Q9NY27 417 aa24.03■■□□□ 1.44
PTPN6-222ENST00000543744 NUDCQ9Y266 331 aa24.02■■□□□ 1.44
PTPN6-222ENST00000543744 PANK3Q9H999 370 aa24■■□□□ 1.43
PTPN6-222ENST00000543744 ZNF518AQ6AHZ1 1483 aa24■■□□□ 1.43
PTPN6-222ENST00000543744 MROH1Q8NDA8 1641 aa23.99■■□□□ 1.43
PTPN6-222ENST00000543744 KIDINS220Q9ULH0 1771 aa23.97■■□□□ 1.43
PTPN6-222ENST00000543744 IQGAP1P46940 1657 aa23.97■■□□□ 1.43
PTPN6-222ENST00000543744 SCAF11Q99590 1463 aaKnown RBP23.96■■□□□ 1.43
PTPN6-222ENST00000543744 NEURL4Q96JN8 1562 aa23.96■■□□□ 1.43
PTPN6-222ENST00000543744 CC2D1BQ5T0F9 858 aaKnown RBP23.94■■□□□ 1.42
PTPN6-222ENST00000543744 CD109Q6YHK3 1445 aa23.94■■□□□ 1.42
PTPN6-222ENST00000543744 SENP3-EIF4A1A0A087X0R7 540 aa23.93■■□□□ 1.42
PTPN6-222ENST00000543744 EFCAB6Q5THR3 1501 aa23.93■■□□□ 1.42
PTPN6-222ENST00000543744 CFAP74Q9C0B2 1584 aa23.92■■□□□ 1.42
PTPN6-222ENST00000543744 CDCA8Q53HL2 280 aa23.92■■□□□ 1.42
PTPN6-222ENST00000543744 RBM19Q9Y4C8 960 aaKnown RBP23.9■■□□□ 1.42
PTPN6-222ENST00000543744 POGZQ7Z3K3 1410 aa23.9■■□□□ 1.42
PTPN6-222ENST00000543744 EIF3AQ14152 1382 aaKnown RBP23.89■■□□□ 1.42
PTPN6-222ENST00000543744 UGGT1Q9NYU2 1555 aa23.89■■□□□ 1.41
PTPN6-222ENST00000543744 RNF123Q5XPI4 1314 aa23.89■■□□□ 1.41
PTPN6-222ENST00000543744 LMTK2Q8IWU2 1503 aa23.89■■□□□ 1.41
PTPN6-222ENST00000543744 KIAA1210Q9ULL0 1709 aa23.88■■□□□ 1.41
PTPN6-222ENST00000543744 MYOM2P54296 1465 aa23.87■■□□□ 1.41
PTPN6-222ENST00000543744 PPRC1Q5VV67 1664 aaKnown RBP23.87■■□□□ 1.41
PTPN6-222ENST00000543744 MLH3Q9UHC1 1453 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms