RNA–Protein interactions for RNA: ENST00000543368.1

NPIPB3-212, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 3

Gene NPIPB3, Length 685 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-212ENST00000543368 DAPK1P53355 1430 aa15.85■□□□□ 0.13
NPIPB3-212ENST00000543368 KDM5DQ9BY66 1539 aa15.85■□□□□ 0.13
NPIPB3-212ENST00000543368 CLTCQ00610 1675 aaKnown RBP15.85■□□□□ 0.13
NPIPB3-212ENST00000543368 ANKRD30AQ9BXX3 1397 aa15.85■□□□□ 0.13
NPIPB3-212ENST00000543368 DNMT1P26358 1616 aaKnown RBP15.84■□□□□ 0.13
NPIPB3-212ENST00000543368 HSPA2P54652 639 aa15.84■□□□□ 0.13
NPIPB3-212ENST00000543368 ERBINQ96RT1 1412 aa15.84■□□□□ 0.13
NPIPB3-212ENST00000543368 KIF15Q9NS87 1388 aa15.83■□□□□ 0.12
NPIPB3-212ENST00000543368 PTPRKQ15262 1439 aa15.82■□□□□ 0.12
NPIPB3-212ENST00000543368 CROCC2H7BZ55 1655 aa15.82■□□□□ 0.12
NPIPB3-212ENST00000543368 FAM50AQ14320 339 aaKnown RBP15.81■□□□□ 0.12
NPIPB3-212ENST00000543368 RNF17Q9BXT8 1623 aaKnown RBP15.81■□□□□ 0.12
NPIPB3-212ENST00000543368 PZPP20742 1482 aa15.79■□□□□ 0.12
NPIPB3-212ENST00000543368 RRP7BPQ9NSQ0 103 aa15.79■□□□□ 0.12
NPIPB3-212ENST00000543368 ZC3H13Q5T200 1668 aaKnown RBP15.79■□□□□ 0.12
NPIPB3-212ENST00000543368 KANK1Q14678 1352 aa15.77■□□□□ 0.12
NPIPB3-212ENST00000543368 ADGRL2O95490 1459 aa15.77■□□□□ 0.11
NPIPB3-212ENST00000543368 TNRQ92752 1358 aa15.76■□□□□ 0.11
NPIPB3-212ENST00000543368 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.76■□□□□ 0.11
NPIPB3-212ENST00000543368 NCOA1Q15788 1441 aa15.76■□□□□ 0.11
NPIPB3-212ENST00000543368 PTPRTO14522 1441 aa15.75■□□□□ 0.11
NPIPB3-212ENST00000543368 ABCC3O15438 1527 aa15.74■□□□□ 0.11
NPIPB3-212ENST00000543368 ZNF142P52746 1687 aaPredicted RBP15.74■□□□□ 0.11
NPIPB3-212ENST00000543368 A2ML1A8K2U0 1454 aa15.74■□□□□ 0.11
NPIPB3-212ENST00000543368 PLA2R1Q13018 1463 aa15.74■□□□□ 0.11
NPIPB3-212ENST00000543368 PKD2Q13563 968 aa15.74■□□□□ 0.11
NPIPB3-212ENST00000543368 CHIC2Q9UKJ5 165 aa15.74■□□□□ 0.11
NPIPB3-212ENST00000543368 MYO3AQ8NEV4 1616 aa15.74■□□□□ 0.11
NPIPB3-212ENST00000543368 CEP170BQ9Y4F5 1589 aaPredicted RBP15.73■□□□□ 0.11
NPIPB3-212ENST00000543368 PRDM15P57071 1507 aaPredicted RBP15.73■□□□□ 0.11
NPIPB3-212ENST00000543368 NLRP1Q9C000 1473 aa15.72■□□□□ 0.11
NPIPB3-212ENST00000543368 ARHGAP31Q2M1Z3 1444 aa15.71■□□□□ 0.11
NPIPB3-212ENST00000543368 ROCK1Q13464 1354 aa15.71■□□□□ 0.11
NPIPB3-212ENST00000543368 CAMSAP1Q5T5Y3 1602 aa15.71■□□□□ 0.11
NPIPB3-212ENST00000543368 MROH1Q8NDA8 1641 aa15.7■□□□□ 0.1
NPIPB3-212ENST00000543368 ANKRD50Q9ULJ7 1429 aa15.69■□□□□ 0.1
NPIPB3-212ENST00000543368 FBXO31Q5XUX0 539 aaPredicted RBP15.69■□□□□ 0.1
NPIPB3-212ENST00000543368 THEMISQ8N1K5 641 aaPredicted RBP15.69■□□□□ 0.1
NPIPB3-212ENST00000543368 DEPDC5O75140 1603 aa15.68■□□□□ 0.1
NPIPB3-212ENST00000543368 STRCQ7RTU9 1775 aa15.68■□□□□ 0.1
NPIPB3-212ENST00000543368 SPATA31D1Q6ZQQ2 1576 aa15.68■□□□□ 0.1
NPIPB3-212ENST00000543368 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.68■□□□□ 0.1
NPIPB3-212ENST00000543368 FBXO41Q8TF61 875 aa15.67■□□□□ 0.1
NPIPB3-212ENST00000543368 LMTK2Q8IWU2 1503 aa15.67■□□□□ 0.1
NPIPB3-212ENST00000543368 ERVK-7P63135 1459 aa15.66■□□□□ 0.1
NPIPB3-212ENST00000543368 ILDR1Q86SU0 546 aaPredicted RBP15.64■□□□□ 0.09
NPIPB3-212ENST00000543368 UGGT1Q9NYU2 1555 aa15.64■□□□□ 0.09
NPIPB3-212ENST00000543368 CEP152O94986 1710 aa15.63■□□□□ 0.09
NPIPB3-212ENST00000543368 VWDEQ8N2E2 1590 aa15.63■□□□□ 0.09
NPIPB3-212ENST00000543368 RRBP1Q9P2E9 1410 aaKnown RBP15.63■□□□□ 0.09
NPIPB3-212ENST00000543368 ANKLE2Q86XL3 938 aa15.63■□□□□ 0.09
NPIPB3-212ENST00000543368 CERKQ8TCT0 537 aa15.63■□□□□ 0.09
NPIPB3-212ENST00000543368 PPARGC1BQ86YN6 1023 aaKnown RBP15.62■□□□□ 0.09
NPIPB3-212ENST00000543368 NCKAP5LQ9HCH0 1330 aa15.62■□□□□ 0.09
NPIPB3-212ENST00000543368 RPRD2Q5VT52 1461 aaKnown RBP15.61■□□□□ 0.09
NPIPB3-212ENST00000543368 ITGAEP38570 1179 aa15.59■□□□□ 0.09
NPIPB3-212ENST00000543368 IQSEC2Q5JU85 1478 aa15.58■□□□□ 0.08
NPIPB3-212ENST00000543368 EFCAB6Q5THR3 1501 aa15.58■□□□□ 0.08
NPIPB3-212ENST00000543368 SLC52A1Q9NWF4 448 aa15.57■□□□□ 0.08
NPIPB3-212ENST00000543368 STAG3Q9UJ98 1225 aa15.57■□□□□ 0.08
NPIPB3-212ENST00000543368 UNC13BO14795 1591 aa15.56■□□□□ 0.08
NPIPB3-212ENST00000543368 POLR1AO95602 1720 aaPredicted RBP15.55■□□□□ 0.08
NPIPB3-212ENST00000543368 MED14O60244 1454 aa15.55■□□□□ 0.08
NPIPB3-212ENST00000543368 NOS1P29475 1434 aa15.55■□□□□ 0.08
NPIPB3-212ENST00000543368 EID1Q9Y6B2 187 aa15.55■□□□□ 0.08
NPIPB3-212ENST00000543368 TET3O43151 1660 aa15.54■□□□□ 0.08
NPIPB3-212ENST00000543368 NPHP4O75161 1426 aaPredicted RBP15.53■□□□□ 0.08
NPIPB3-212ENST00000543368 KDM5AP29375 1690 aaKnown RBP15.53■□□□□ 0.08
NPIPB3-212ENST00000543368 NUP155O75694 1391 aa15.52■□□□□ 0.08
NPIPB3-212ENST00000543368 SLIT1O75093 1534 aa15.52■□□□□ 0.07
NPIPB3-212ENST00000543368 LTBP4Q8N2S1 1624 aa15.51■□□□□ 0.07
NPIPB3-212ENST00000543368 HDGFP51858 240 aaKnown RBP15.51■□□□□ 0.07
NPIPB3-212ENST00000543368 UBR1Q8IWV7 1749 aa15.51■□□□□ 0.07
NPIPB3-212ENST00000543368 GCC2Q8IWJ2 1684 aa15.51■□□□□ 0.07
NPIPB3-212ENST00000543368 IQGAP3Q86VI3 1631 aa15.5■□□□□ 0.07
NPIPB3-212ENST00000543368 NEURL4Q96JN8 1562 aa15.5■□□□□ 0.07
NPIPB3-212ENST00000543368 IDI1Q13907 227 aa15.5■□□□□ 0.07
NPIPB3-212ENST00000543368 SCAF11Q99590 1463 aaKnown RBP15.5■□□□□ 0.07
NPIPB3-212ENST00000543368 ARHGAP23Q9P227 1491 aa15.5■□□□□ 0.07
NPIPB3-212ENST00000543368 CFAP65Q6ZU64 1925 aaKnown RBP15.5■□□□□ 0.07
NPIPB3-212ENST00000543368 TMEM2Q9UHN6 1383 aa15.49■□□□□ 0.07
NPIPB3-212ENST00000543368 ZNF335Q9H4Z2 1342 aaPredicted RBP15.49■□□□□ 0.07
NPIPB3-212ENST00000543368 ACIN1Q9UKV3 1341 aaKnown RBP15.49■□□□□ 0.07
NPIPB3-212ENST00000543368 TXNDC2Q86VQ3 553 aa15.49■□□□□ 0.07
NPIPB3-212ENST00000543368 CPS1P31327 1500 aa15.48■□□□□ 0.07
NPIPB3-212ENST00000543368 PIK3C2BO00750 1634 aa15.47■□□□□ 0.07
NPIPB3-212ENST00000543368 HFM1A2PYH4 1435 aa15.47■□□□□ 0.07
NPIPB3-212ENST00000543368 SYNMO15061 1565 aa15.47■□□□□ 0.07
NPIPB3-212ENST00000543368 IQGAP1P46940 1657 aa15.47■□□□□ 0.07
NPIPB3-212ENST00000543368 NAIPQ13075 1403 aa15.46■□□□□ 0.07
NPIPB3-212ENST00000543368 ADGRB3O60242 1522 aa15.46■□□□□ 0.07
NPIPB3-212ENST00000543368 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.43■□□□□ 0.06
NPIPB3-212ENST00000543368 LTKP29376 864 aa15.42■□□□□ 0.06
NPIPB3-212ENST00000543368 E9PCH4 1651 aa15.41■□□□□ 0.06
NPIPB3-212ENST00000543368 TRIM52Q96A61 297 aa15.4■□□□□ 0.06
NPIPB3-212ENST00000543368 PPP1R15AO75807 674 aaPredicted RBP15.39■□□□□ 0.05
NPIPB3-212ENST00000543368 CHGAP10645 457 aaKnown RBP15.39■□□□□ 0.05
NPIPB3-212ENST00000543368 TOM1O60784 492 aa15.38■□□□□ 0.05
NPIPB3-212ENST00000543368 RIMS2Q9UQ26 1411 aa15.37■□□□□ 0.05
NPIPB3-212ENST00000543368 UBAP1LF5GYI3 381 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms