RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 SF3A1Q15459 793 aaKnown RBP23.8■■□□□ 1.4
HDAC4-215ENST00000543185 FAM43AQ8N2R8 423 aa23.8■■□□□ 1.4
HDAC4-215ENST00000543185 SMC4Q9NTJ3 1288 aa23.79■■□□□ 1.4
HDAC4-215ENST00000543185 KAT6BQ8WYB5 2073 aa23.79■■□□□ 1.4
HDAC4-215ENST00000543185 REC8O95072 547 aa23.79■■□□□ 1.4
HDAC4-215ENST00000543185 RUFY1Q96T51 708 aa23.79■■□□□ 1.4
HDAC4-215ENST00000543185 NLRP13Q86W25 1043 aa23.78■■□□□ 1.4
HDAC4-215ENST00000543185 SRPK2P78362 688 aaKnown RBP23.78■■□□□ 1.4
HDAC4-215ENST00000543185 DIAPH3Q9NSV4 1193 aa23.77■■□□□ 1.4
HDAC4-215ENST00000543185 ZBED9Q6R2W3 1325 aa23.77■■□□□ 1.4
HDAC4-215ENST00000543185 FMN1Q68DA7 1419 aa23.76■■□□□ 1.39
HDAC4-215ENST00000543185 CCAR2Q8N163 923 aaKnown RBP23.76■■□□□ 1.39
HDAC4-215ENST00000543185 EIF4G1Q04637 1599 aaKnown RBP23.76■■□□□ 1.39
HDAC4-215ENST00000543185 SIN3AQ96ST3 1273 aa23.75■■□□□ 1.39
HDAC4-215ENST00000543185 GORABQ5T7V8 394 aa23.75■■□□□ 1.39
HDAC4-215ENST00000543185 ROCK1Q13464 1354 aa23.75■■□□□ 1.39
HDAC4-215ENST00000543185 PRM3Q9NNZ6 103 aa23.75■■□□□ 1.39
HDAC4-215ENST00000543185 CCDC191Q8NCU4 936 aa23.74■■□□□ 1.39
HDAC4-215ENST00000543185 AAMPQ13685 434 aa23.74■■□□□ 1.39
HDAC4-215ENST00000543185 SENP3-EIF4A1A0A087X0R7 540 aa23.73■■□□□ 1.39
HDAC4-215ENST00000543185 CGNL1Q0VF96 1302 aa23.72■■□□□ 1.39
HDAC4-215ENST00000543185 NCBP3Q53F19 620 aaKnown RBP23.71■■□□□ 1.39
HDAC4-215ENST00000543185 DHX8Q14562 1220 aaKnown RBP23.71■■□□□ 1.39
HDAC4-215ENST00000543185 TAF3Q5VWG9 929 aa23.71■■□□□ 1.39
HDAC4-215ENST00000543185 NGEFQ8N5V2 710 aa23.71■■□□□ 1.39
HDAC4-215ENST00000543185 NAT10Q9H0A0 1025 aaKnown RBP23.71■■□□□ 1.39
HDAC4-215ENST00000543185 HSPA5P11021 654 aaKnown RBP23.71■■□□□ 1.39
HDAC4-215ENST00000543185 TMX4Q9H1E5 349 aaPredicted RBP23.7■■□□□ 1.38
HDAC4-215ENST00000543185 APBB1O00213 710 aa23.7■■□□□ 1.38
HDAC4-215ENST00000543185 FAM13BQ9NYF5 915 aa23.7■■□□□ 1.38
HDAC4-215ENST00000543185 U2AF1L5P0DN76 240 aaPredicted RBP23.69■■□□□ 1.38
HDAC4-215ENST00000543185 U2AF1Q01081 240 aaKnown RBP eCLIP23.69■■□□□ 1.38
HDAC4-215ENST00000543185 RDXP35241 583 aaKnown RBP23.69■■□□□ 1.38
HDAC4-215ENST00000543185 MYO6Q9UM54 1294 aa23.69■■□□□ 1.38
HDAC4-215ENST00000543185 APPP05067 770 aa23.69■■□□□ 1.38
HDAC4-215ENST00000543185 ERCC4Q92889 916 aaPredicted RBP23.69■■□□□ 1.38
HDAC4-215ENST00000543185 KCNH8Q96L42 1107 aa23.69■■□□□ 1.38
HDAC4-215ENST00000543185 HMGN5P82970 282 aaKnown RBP23.68■■□□□ 1.38
HDAC4-215ENST00000543185 CCP110O43303 1012 aa23.68■■□□□ 1.38
HDAC4-215ENST00000543185 PES1O00541 588 aaKnown RBP23.67■■□□□ 1.38
HDAC4-215ENST00000543185 CCDC39Q9UFE4 941 aa23.67■■□□□ 1.38
HDAC4-215ENST00000543185 HOMER1Q86YM7 354 aa23.67■■□□□ 1.38
HDAC4-215ENST00000543185 FAM184AQ8NB25 1140 aa23.66■■□□□ 1.38
HDAC4-215ENST00000543185 CREBRFQ8IUR6 639 aa23.65■■□□□ 1.38
HDAC4-215ENST00000543185 TERF2IPQ9NYB0 399 aa23.65■■□□□ 1.38
HDAC4-215ENST00000543185 NUCB2P80303 420 aa23.64■■□□□ 1.37
HDAC4-215ENST00000543185 LMOD2Q6P5Q4 547 aa23.64■■□□□ 1.37
HDAC4-215ENST00000543185 PLEKHG5O94827 1062 aa23.64■■□□□ 1.37
HDAC4-215ENST00000543185 PDE4AP27815 886 aa23.63■■□□□ 1.37
HDAC4-215ENST00000543185 MYBBP1AQ9BQG0 1328 aaKnown RBP23.63■■□□□ 1.37
HDAC4-215ENST00000543185 RUFY2Q8WXA3 655 aa23.63■■□□□ 1.37
HDAC4-215ENST00000543185 UACAQ9BZF9 1416 aa23.63■■□□□ 1.37
HDAC4-215ENST00000543185 RAB3GAP2Q9H2M9 1393 aa23.63■■□□□ 1.37
HDAC4-215ENST00000543185 ZNF592Q92610 1267 aa23.62■■□□□ 1.37
HDAC4-215ENST00000543185 CCDC18Q5T9S5 1454 aa23.62■■□□□ 1.37
HDAC4-215ENST00000543185 CPLX2Q6PUV4 134 aaKnown RBP23.61■■□□□ 1.37
HDAC4-215ENST00000543185 CCDC47Q96A33 483 aaKnown RBP23.61■■□□□ 1.37
HDAC4-215ENST00000543185 AKAP17AQ02040 695 aaKnown RBP23.61■■□□□ 1.37
HDAC4-215ENST00000543185 LETM1O95202 739 aaPredicted RBP23.6■■□□□ 1.37
HDAC4-215ENST00000543185 ANKRD30AQ9BXX3 1397 aa23.6■■□□□ 1.37
HDAC4-215ENST00000543185 ZKSCAN1P17029 563 aaPredicted RBP23.59■■□□□ 1.37
HDAC4-215ENST00000543185 MNS1Q8NEH6 495 aa23.59■■□□□ 1.37
HDAC4-215ENST00000543185 H0YHG0 523 aa23.59■■□□□ 1.37
HDAC4-215ENST00000543185 CHMP5Q9NZZ3 219 aa23.58■■□□□ 1.37
HDAC4-215ENST00000543185 MRE11P49959 708 aa23.58■■□□□ 1.36
HDAC4-215ENST00000543185 TAF7LQ5H9L4 462 aa23.58■■□□□ 1.36
HDAC4-215ENST00000543185 E9PSI1 815 aa23.57■■□□□ 1.36
HDAC4-215ENST00000543185 KIF7Q2M1P5 1343 aa23.57■■□□□ 1.36
HDAC4-215ENST00000543185 NASPP49321 788 aaPredicted RBP23.56■■□□□ 1.36
HDAC4-215ENST00000543185 CCDC173Q0VFZ6 552 aa23.56■■□□□ 1.36
HDAC4-215ENST00000543185 RNF20Q5VTR2 975 aa23.55■■□□□ 1.36
HDAC4-215ENST00000543185 TRIM29Q14134 588 aa23.54■■□□□ 1.36
HDAC4-215ENST00000543185 PATL2C9JE40 543 aaKnown RBP23.54■■□□□ 1.36
HDAC4-215ENST00000543185 IFT57Q9NWB7 429 aa23.54■■□□□ 1.36
HDAC4-215ENST00000543185 LEKR1Q6ZMV7 388 aa23.54■■□□□ 1.36
HDAC4-215ENST00000543185 RRP1P56182 461 aaKnown RBP23.53■■□□□ 1.36
HDAC4-215ENST00000543185 MARCH6O60337 910 aa23.53■■□□□ 1.36
HDAC4-215ENST00000543185 SASS6Q6UVJ0 657 aa23.53■■□□□ 1.36
HDAC4-215ENST00000543185 SYNE3Q6ZMZ3 975 aa23.52■■□□□ 1.36
HDAC4-215ENST00000543185 CHMP3Q9Y3E7 222 aa23.51■■□□□ 1.35
HDAC4-215ENST00000543185 CAGE1Q8TC20 777 aa23.51■■□□□ 1.35
HDAC4-215ENST00000543185 PKNOX2Q96KN3 472 aa23.51■■□□□ 1.35
HDAC4-215ENST00000543185 DDX19BQ9UMR2 479 aa23.51■■□□□ 1.35
HDAC4-215ENST00000543185 SMARCA2P51531 1590 aa23.5■■□□□ 1.35
HDAC4-215ENST00000543185 USP8P40818 1118 aa23.5■■□□□ 1.35
HDAC4-215ENST00000543185 CAVIN1Q6NZI2 390 aaKnown RBP23.5■■□□□ 1.35
HDAC4-215ENST00000543185 GOLGA6L7A0A1B0GV03 622 aa23.5■■□□□ 1.35
HDAC4-215ENST00000543185 ZRSR2Q15696 482 aaKnown RBP23.49■■□□□ 1.35
HDAC4-215ENST00000543185 ZKSCAN2Q63HK3 967 aa23.48■■□□□ 1.35
HDAC4-215ENST00000543185 CARMIL2Q6F5E8 1435 aa23.47■■□□□ 1.35
HDAC4-215ENST00000543185 NOL8Q76FK4 1167 aaKnown RBP23.47■■□□□ 1.35
HDAC4-215ENST00000543185 INCENPQ9NQS7 918 aa23.47■■□□□ 1.35
HDAC4-215ENST00000543185 MCTP1Q6DN14 999 aa23.46■■□□□ 1.35
HDAC4-215ENST00000543185 SENP3Q9H4L4 574 aaPredicted RBP23.46■■□□□ 1.35
HDAC4-215ENST00000543185 FOXD4L1Q9NU39 408 aa23.46■■□□□ 1.35
HDAC4-215ENST00000543185 TCEAL9Q9UHQ7 104 aa23.46■■□□□ 1.35
HDAC4-215ENST00000543185 ERCC6Q03468 1493 aa23.46■■□□□ 1.35
HDAC4-215ENST00000543185 MBD3O95983 291 aa23.46■■□□□ 1.35
HDAC4-215ENST00000543185 AMOTL1Q8IY63 956 aa23.45■■□□□ 1.35
HDAC4-215ENST00000543185 RRP9O43818 475 aaKnown RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms