RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 FAM135AQ9P2D6 1515 aa13.3□□□□□ -0.28
CHMP4A-209ENST00000542700 PLXNC1O60486 1568 aa13.3□□□□□ -0.28
CHMP4A-209ENST00000542700 SAMD9LQ8IVG5 1584 aa13.3□□□□□ -0.28
CHMP4A-209ENST00000542700 FBXO31Q5XUX0 539 aaPredicted RBP13.3□□□□□ -0.28
CHMP4A-209ENST00000542700 UGGT1Q9NYU2 1555 aa13.29□□□□□ -0.28
CHMP4A-209ENST00000542700 ATP1B4Q9UN42 357 aaPredicted RBP13.29□□□□□ -0.28
CHMP4A-209ENST00000542700 CDK12Q9NYV4 1490 aaPredicted RBP13.29□□□□□ -0.28
CHMP4A-209ENST00000542700 A2MP01023 1474 aa13.28□□□□□ -0.28
CHMP4A-209ENST00000542700 RBM33Q96EV2 1170 aaKnown RBP13.27□□□□□ -0.29
CHMP4A-209ENST00000542700 SPAG9O60271 1321 aaKnown RBP13.27□□□□□ -0.29
CHMP4A-209ENST00000542700 TROQ12816 1431 aaPredicted RBP13.27□□□□□ -0.29
CHMP4A-209ENST00000542700 PREX2Q70Z35 1606 aa13.27□□□□□ -0.29
CHMP4A-209ENST00000542700 PHLPP1O60346 1717 aa13.27□□□□□ -0.29
CHMP4A-209ENST00000542700 CLIP1P30622 1438 aa13.26□□□□□ -0.29
CHMP4A-209ENST00000542700 CDK11AQ9UQ88 783 aaPredicted RBP13.26□□□□□ -0.29
CHMP4A-209ENST00000542700 ZC3H13Q5T200 1668 aaKnown RBP13.24□□□□□ -0.29
CHMP4A-209ENST00000542700 ATP7AQ04656 1500 aa13.24□□□□□ -0.29
CHMP4A-209ENST00000542700 NLRP1Q9C000 1473 aa13.24□□□□□ -0.29
CHMP4A-209ENST00000542700 FOXD1Q16676 465 aa13.24□□□□□ -0.29
CHMP4A-209ENST00000542700 PZPP20742 1482 aa13.23□□□□□ -0.29
CHMP4A-209ENST00000542700 RGS12O14924 1447 aa13.23□□□□□ -0.29
CHMP4A-209ENST00000542700 NUTM2BA6NNL0 878 aaPredicted RBP13.23□□□□□ -0.29
CHMP4A-209ENST00000542700 NUTM2EB1AL46 878 aaPredicted RBP13.23□□□□□ -0.29
CHMP4A-209ENST00000542700 NUTM2DQ5VT03 806 aaPredicted RBP13.23□□□□□ -0.29
CHMP4A-209ENST00000542700 NUTM2AQ8IVF1 878 aaPredicted RBP13.23□□□□□ -0.29
CHMP4A-209ENST00000542700 KDM5DQ9BY66 1539 aa13.23□□□□□ -0.29
CHMP4A-209ENST00000542700 SYCP2Q9BX26 1530 aa13.22□□□□□ -0.29
CHMP4A-209ENST00000542700 LRRC9Q6ZRR7 1453 aa13.22□□□□□ -0.29
CHMP4A-209ENST00000542700 TMEM94Q12767 1356 aa13.21□□□□□ -0.29
CHMP4A-209ENST00000542700 SPATA31A6Q5VVP1 1343 aa13.21□□□□□ -0.29
CHMP4A-209ENST00000542700 MIA2Q96PC5 1412 aa13.21□□□□□ -0.3
CHMP4A-209ENST00000542700 INO80Q9ULG1 1556 aaPredicted RBP13.2□□□□□ -0.3
CHMP4A-209ENST00000542700 ZNF777Q9ULD5 760 aaPredicted RBP13.19□□□□□ -0.3
CHMP4A-209ENST00000542700 COL16A1Q07092 1604 aaPredicted RBP13.19□□□□□ -0.3
CHMP4A-209ENST00000542700 IFFO2Q5TF58 517 aa13.18□□□□□ -0.3
CHMP4A-209ENST00000542700 MAP3K1Q13233 1512 aa13.18□□□□□ -0.3
CHMP4A-209ENST00000542700 SCAF11Q99590 1463 aaKnown RBP13.16□□□□□ -0.3
CHMP4A-209ENST00000542700 HNRNPMP52272 730 aaKnown RBP eCLIP13.16□□□□□ -0.3
CHMP4A-209ENST00000542700 ATAD2Q6PL18 1390 aa13.16□□□□□ -0.3
CHMP4A-209ENST00000542700 AFF2P51816 1311 aa13.15□□□□□ -0.3
CHMP4A-209ENST00000542700 FGD6Q6ZV73 1430 aa13.15□□□□□ -0.3
CHMP4A-209ENST00000542700 ADGBQ8N7X0 1667 aa13.14□□□□□ -0.31
CHMP4A-209ENST00000542700 CDC42BPAQ5VT25 1732 aa13.13□□□□□ -0.31
CHMP4A-209ENST00000542700 CHIC1Q5VXU3 224 aa13.12□□□□□ -0.31
CHMP4A-209ENST00000542700 SLAIN2Q9P270 581 aa13.12□□□□□ -0.31
CHMP4A-209ENST00000542700 LRP5O75197 1615 aa13.12□□□□□ -0.31
CHMP4A-209ENST00000542700 RBM6P78332 1123 aaKnown RBP13.11□□□□□ -0.31
CHMP4A-209ENST00000542700 PROSER2Q86WR7 435 aaPredicted RBP13.11□□□□□ -0.31
CHMP4A-209ENST00000542700 SHPRHQ149N8 1683 aa13.11□□□□□ -0.31
CHMP4A-209ENST00000542700 WASHC2CQ9Y4E1 1318 aa13.11□□□□□ -0.31
CHMP4A-209ENST00000542700 MSH6P52701 1360 aa13.1□□□□□ -0.31
CHMP4A-209ENST00000542700 LTKP29376 864 aa13.1□□□□□ -0.31
CHMP4A-209ENST00000542700 FMN1Q68DA7 1419 aa13.1□□□□□ -0.31
CHMP4A-209ENST00000542700 TIAM1Q13009 1591 aa13.1□□□□□ -0.31
CHMP4A-209ENST00000542700 KIF3BO15066 747 aa13.08□□□□□ -0.32
CHMP4A-209ENST00000542700 TXNDC2Q86VQ3 553 aa13.08□□□□□ -0.32
CHMP4A-209ENST00000542700 CSRNP3Q8WYN3 585 aa13.08□□□□□ -0.32
CHMP4A-209ENST00000542700 QTRT2Q9H974 415 aaKnown RBP13.08□□□□□ -0.32
CHMP4A-209ENST00000542700 LRRIQ1Q96JM4 1722 aa13.08□□□□□ -0.32
CHMP4A-209ENST00000542700 PRDM15P57071 1507 aaPredicted RBP13.07□□□□□ -0.32
CHMP4A-209ENST00000542700 UBR1Q8IWV7 1749 aa13.06□□□□□ -0.32
CHMP4A-209ENST00000542700 NCOA2Q15596 1464 aa13.05□□□□□ -0.32
CHMP4A-209ENST00000542700 KCNA6P17658 529 aa13.05□□□□□ -0.32
CHMP4A-209ENST00000542700 YY1P25490 414 aa13.05□□□□□ -0.32
CHMP4A-209ENST00000542700 KIAA1107Q9UPP5 1409 aa13.05□□□□□ -0.32
CHMP4A-209ENST00000542700 ARHGAP23Q9P227 1491 aa13.04□□□□□ -0.32
CHMP4A-209ENST00000542700 C8orf37Q96NL8 207 aa13.04□□□□□ -0.32
CHMP4A-209ENST00000542700 DHX29Q7Z478 1369 aaKnown RBP13.04□□□□□ -0.32
CHMP4A-209ENST00000542700 PLEKHH2Q8IVE3 1493 aa13.04□□□□□ -0.32
CHMP4A-209ENST00000542700 SLIT1O75093 1534 aa13.03□□□□□ -0.32
CHMP4A-209ENST00000542700 AHDC1Q5TGY3 1603 aaPredicted RBP13.03□□□□□ -0.32
CHMP4A-209ENST00000542700 NKTRP30414 1462 aaKnown RBP13.03□□□□□ -0.32
CHMP4A-209ENST00000542700 ERVK-7P63135 1459 aa13.03□□□□□ -0.32
CHMP4A-209ENST00000542700 NGLY1Q96IV0 654 aa13.02□□□□□ -0.33
CHMP4A-209ENST00000542700 EID1Q9Y6B2 187 aa13.02□□□□□ -0.33
CHMP4A-209ENST00000542700 GPATCH8Q9UKJ3 1502 aaKnown RBP13.02□□□□□ -0.33
CHMP4A-209ENST00000542700 ABCC3O15438 1527 aa13.01□□□□□ -0.33
CHMP4A-209ENST00000542700 DIP2AQ14689 1571 aa13.01□□□□□ -0.33
CHMP4A-209ENST00000542700 KDM5AP29375 1690 aaKnown RBP13.01□□□□□ -0.33
CHMP4A-209ENST00000542700 NWD1Q149M9 1564 aa13□□□□□ -0.33
CHMP4A-209ENST00000542700 CCDC125Q86Z20 511 aa13□□□□□ -0.33
CHMP4A-209ENST00000542700 SLC26A8Q96RN1 970 aa13□□□□□ -0.33
CHMP4A-209ENST00000542700 CFDP1Q9UEE9 299 aaPredicted RBP12.98□□□□□ -0.33
CHMP4A-209ENST00000542700 NHSL1Q5SYE7 1610 aa12.97□□□□□ -0.33
CHMP4A-209ENST00000542700 ARHGAP35Q9NRY4 1499 aa12.96□□□□□ -0.34
CHMP4A-209ENST00000542700 RTEL1-TNFRSF6BF6WH68 1400 aa12.96□□□□□ -0.34
CHMP4A-209ENST00000542700 EP400Q96L91 3159 aa12.95□□□□□ -0.34
CHMP4A-209ENST00000542700 CCDC18Q5T9S5 1454 aa12.95□□□□□ -0.34
CHMP4A-209ENST00000542700 PSDA5PKW4 1024 aaPredicted RBP12.94□□□□□ -0.34
CHMP4A-209ENST00000542700 DEFB132Q7Z7B7 95 aa12.94□□□□□ -0.34
CHMP4A-209ENST00000542700 TMEM2Q9UHN6 1383 aa12.94□□□□□ -0.34
CHMP4A-209ENST00000542700 SENP3-EIF4A1A0A087X0R7 540 aa12.93□□□□□ -0.34
CHMP4A-209ENST00000542700 C14orf37Q86TY3 774 aa12.93□□□□□ -0.34
CHMP4A-209ENST00000542700 MAST1Q9Y2H9 1570 aa12.93□□□□□ -0.34
CHMP4A-209ENST00000542700 ZNF644Q9H582 1327 aaPredicted RBP12.92□□□□□ -0.34
CHMP4A-209ENST00000542700 HRCP23327 699 aa12.92□□□□□ -0.34
CHMP4A-209ENST00000542700 BLMP54132 1417 aaPredicted RBP12.92□□□□□ -0.34
CHMP4A-209ENST00000542700 TET3O43151 1660 aa12.92□□□□□ -0.34
CHMP4A-209ENST00000542700 ADAMTS2O95450 1211 aa12.91□□□□□ -0.34
CHMP4A-209ENST00000542700 CCNB3Q8WWL7 1395 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms