RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 KDM5CP41229 1560 aa13.71□□□□□ -0.21
LMO3-227ENST00000541764 UNC13BO14795 1591 aa13.7□□□□□ -0.22
LMO3-227ENST00000541764 PLXNC1O60486 1568 aa13.7□□□□□ -0.22
LMO3-227ENST00000541764 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.7□□□□□ -0.22
LMO3-227ENST00000541764 ROCK2O75116 1388 aaKnown RBP13.69□□□□□ -0.22
LMO3-227ENST00000541764 USP47Q96K76 1375 aa13.69□□□□□ -0.22
LMO3-227ENST00000541764 NEFLP07196 543 aa13.68□□□□□ -0.22
LMO3-227ENST00000541764 HNRNPMP52272 730 aaKnown RBP eCLIP13.67□□□□□ -0.22
LMO3-227ENST00000541764 CLASP1Q7Z460 1538 aa13.67□□□□□ -0.22
LMO3-227ENST00000541764 FAM135AQ9P2D6 1515 aa13.67□□□□□ -0.22
LMO3-227ENST00000541764 ERICH6BQ5W0A0 696 aa13.67□□□□□ -0.22
LMO3-227ENST00000541764 TTC37Q6PGP7 1564 aa13.67□□□□□ -0.22
LMO3-227ENST00000541764 DHX29Q7Z478 1369 aaKnown RBP13.67□□□□□ -0.22
LMO3-227ENST00000541764 ATP10AO60312 1499 aa13.66□□□□□ -0.22
LMO3-227ENST00000541764 FKBP8Q14318 412 aa13.66□□□□□ -0.22
LMO3-227ENST00000541764 MAGI2Q86UL8 1455 aa13.65□□□□□ -0.22
LMO3-227ENST00000541764 BCORL1Q5H9F3 1711 aa13.65□□□□□ -0.22
LMO3-227ENST00000541764 MYO5CQ9NQX4 1742 aa13.65□□□□□ -0.22
LMO3-227ENST00000541764 ARHGAP5Q13017 1502 aa13.64□□□□□ -0.23
LMO3-227ENST00000541764 ARAP3Q8WWN8 1544 aa13.64□□□□□ -0.23
LMO3-227ENST00000541764 SYCP2Q9BX26 1530 aa13.64□□□□□ -0.23
LMO3-227ENST00000541764 PLCH2O75038 1416 aa13.64□□□□□ -0.23
LMO3-227ENST00000541764 IQGAP3Q86VI3 1631 aa13.63□□□□□ -0.23
LMO3-227ENST00000541764 HNRNPUQ00839 825 aaKnown RBP eCLIP13.63□□□□□ -0.23
LMO3-227ENST00000541764 DUOX2Q9NRD8 1548 aa13.63□□□□□ -0.23
LMO3-227ENST00000541764 ERBINQ96RT1 1412 aa13.63□□□□□ -0.23
LMO3-227ENST00000541764 MYT1Q01538 1121 aa13.62□□□□□ -0.23
LMO3-227ENST00000541764 KTN1Q86UP2 1357 aaKnown RBP13.62□□□□□ -0.23
LMO3-227ENST00000541764 ZBED9Q6R2W3 1325 aa13.62□□□□□ -0.23
LMO3-227ENST00000541764 TSHZ2Q9NRE2 1034 aa13.61□□□□□ -0.23
LMO3-227ENST00000541764 LAMC1P11047 1609 aa13.61□□□□□ -0.23
LMO3-227ENST00000541764 ERCC6L2Q5T890 1561 aa13.61□□□□□ -0.23
LMO3-227ENST00000541764 GPRASP1Q5JY77 1395 aa13.61□□□□□ -0.23
LMO3-227ENST00000541764 PLA2R1Q13018 1463 aa13.59□□□□□ -0.23
LMO3-227ENST00000541764 PRAG1Q86YV5 1406 aa13.59□□□□□ -0.23
LMO3-227ENST00000541764 NPM3O75607 178 aaKnown RBP13.59□□□□□ -0.23
LMO3-227ENST00000541764 ZCCHC11Q5TAX3 1644 aaKnown RBP13.58□□□□□ -0.23
LMO3-227ENST00000541764 CCDC144AA2RUR9 1427 aa13.58□□□□□ -0.24
LMO3-227ENST00000541764 RTEL1-TNFRSF6BF6WH68 1400 aa13.58□□□□□ -0.24
LMO3-227ENST00000541764 CCDC184Q52MB2 194 aa13.58□□□□□ -0.24
LMO3-227ENST00000541764 MRS2Q9HD23 443 aa13.58□□□□□ -0.24
LMO3-227ENST00000541764 ABCC1P33527 1531 aa13.58□□□□□ -0.24
LMO3-227ENST00000541764 CARD11Q9BXL7 1154 aa13.57□□□□□ -0.24
LMO3-227ENST00000541764 TRPM1Q7Z4N2 1603 aa13.56□□□□□ -0.24
LMO3-227ENST00000541764 EFCAB2Q5VUJ9 269 aa13.56□□□□□ -0.24
LMO3-227ENST00000541764 E9PCH4 1651 aa13.55□□□□□ -0.24
LMO3-227ENST00000541764 EIF2AK4Q9P2K8 1649 aaKnown RBP13.54□□□□□ -0.24
LMO3-227ENST00000541764 A2MP01023 1474 aa13.53□□□□□ -0.24
LMO3-227ENST00000541764 DCAF11Q8TEB1 546 aa13.53□□□□□ -0.24
LMO3-227ENST00000541764 PRDM15P57071 1507 aaPredicted RBP13.52□□□□□ -0.24
LMO3-227ENST00000541764 STAC3Q96MF2 364 aa13.52□□□□□ -0.25
LMO3-227ENST00000541764 RALBP1Q15311 655 aa13.51□□□□□ -0.25
LMO3-227ENST00000541764 ZNF326Q5BKZ1 582 aaKnown RBP13.51□□□□□ -0.25
LMO3-227ENST00000541764 BRD4O60885 1362 aaPredicted RBP13.51□□□□□ -0.25
LMO3-227ENST00000541764 SMG6Q86US8 1419 aaKnown RBP13.5□□□□□ -0.25
LMO3-227ENST00000541764 ST20-MTHFSA0A0A6YYL1 179 aa13.5□□□□□ -0.25
LMO3-227ENST00000541764 BCANQ96GW7 911 aa13.5□□□□□ -0.25
LMO3-227ENST00000541764 WASHC2CQ9Y4E1 1318 aa13.5□□□□□ -0.25
LMO3-227ENST00000541764 WDR7Q9Y4E6 1490 aa13.49□□□□□ -0.25
LMO3-227ENST00000541764 FAM9BQ8IZU0 186 aa13.49□□□□□ -0.25
LMO3-227ENST00000541764 NEURL4Q96JN8 1562 aa13.49□□□□□ -0.25
LMO3-227ENST00000541764 INSRP06213 1382 aa13.49□□□□□ -0.25
LMO3-227ENST00000541764 LRPPRCP42704 1394 aaKnown RBP13.49□□□□□ -0.25
LMO3-227ENST00000541764 TRAPPC8Q9Y2L5 1435 aa13.49□□□□□ -0.25
LMO3-227ENST00000541764 DEPDC5O75140 1603 aa13.48□□□□□ -0.25
LMO3-227ENST00000541764 PTPRTO14522 1441 aa13.48□□□□□ -0.25
LMO3-227ENST00000541764 COL17A1Q9UMD9 1497 aaPredicted RBP13.48□□□□□ -0.25
LMO3-227ENST00000541764 ZFYVE16Q7Z3T8 1539 aa13.48□□□□□ -0.25
LMO3-227ENST00000541764 PNISRQ8TF01 805 aaKnown RBP13.48□□□□□ -0.25
LMO3-227ENST00000541764 RNF17Q9BXT8 1623 aaKnown RBP13.47□□□□□ -0.25
LMO3-227ENST00000541764 KDM2AQ9Y2K7 1162 aa13.47□□□□□ -0.25
LMO3-227ENST00000541764 RNF123Q5XPI4 1314 aa13.47□□□□□ -0.25
LMO3-227ENST00000541764 VWDEQ8N2E2 1590 aa13.46□□□□□ -0.25
LMO3-227ENST00000541764 ABCA9Q8IUA7 1624 aa13.46□□□□□ -0.25
LMO3-227ENST00000541764 ABCB7O75027 752 aa13.46□□□□□ -0.25
LMO3-227ENST00000541764 PPP4R2Q9NY27 417 aa13.46□□□□□ -0.25
LMO3-227ENST00000541764 ZNF219Q9P2Y4 722 aaPredicted RBP13.46□□□□□ -0.25
LMO3-227ENST00000541764 MYBBP1AQ9BQG0 1328 aaKnown RBP13.46□□□□□ -0.25
LMO3-227ENST00000541764 TRPM2O94759 1503 aa13.46□□□□□ -0.26
LMO3-227ENST00000541764 ZMYM4Q5VZL5 1548 aa13.46□□□□□ -0.26
LMO3-227ENST00000541764 TRHP20396 242 aaPredicted RBP13.45□□□□□ -0.26
LMO3-227ENST00000541764 PARD3Q8TEW0 1356 aa13.45□□□□□ -0.26
LMO3-227ENST00000541764 INO80Q9ULG1 1556 aaPredicted RBP13.44□□□□□ -0.26
LMO3-227ENST00000541764 SPAG9O60271 1321 aaKnown RBP13.44□□□□□ -0.26
LMO3-227ENST00000541764 RBM42Q9BTD8 480 aaKnown RBP13.44□□□□□ -0.26
LMO3-227ENST00000541764 TESK2Q96S53 571 aa13.43□□□□□ -0.26
LMO3-227ENST00000541764 SCAPERQ9BY12 1400 aa13.43□□□□□ -0.26
LMO3-227ENST00000541764 PER1O15534 1290 aaPredicted RBP13.42□□□□□ -0.26
LMO3-227ENST00000541764 CHRDL2Q6WN34 429 aa13.42□□□□□ -0.26
LMO3-227ENST00000541764 NUDCQ9Y266 331 aa13.42□□□□□ -0.26
LMO3-227ENST00000541764 TET3O43151 1660 aa13.42□□□□□ -0.26
LMO3-227ENST00000541764 NBPF1Q3BBV0 1214 aa13.41□□□□□ -0.26
LMO3-227ENST00000541764 TMC1Q8TDI8 760 aa13.41□□□□□ -0.26
LMO3-227ENST00000541764 ATP7AQ04656 1500 aa13.41□□□□□ -0.26
LMO3-227ENST00000541764 MADDQ8WXG6 1647 aa13.4□□□□□ -0.26
LMO3-227ENST00000541764 NLRP13Q86W25 1043 aa13.4□□□□□ -0.26
LMO3-227ENST00000541764 CEP152O94986 1710 aa13.4□□□□□ -0.26
LMO3-227ENST00000541764 FANCAO15360 1455 aa13.39□□□□□ -0.27
LMO3-227ENST00000541764 SP7Q8TDD2 431 aaPredicted RBP13.39□□□□□ -0.27
LMO3-227ENST00000541764 SPHKAPQ2M3C7 1700 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms