RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 NEUROD2Q15784 382 aa18.06■□□□□ 0.48
PTPN1-202ENST00000541713 BCORL1Q5H9F3 1711 aa18.06■□□□□ 0.48
PTPN1-202ENST00000541713 KTN1Q86UP2 1357 aaKnown RBP18.04■□□□□ 0.48
PTPN1-202ENST00000541713 NLRP13Q86W25 1043 aa18.04■□□□□ 0.48
PTPN1-202ENST00000541713 LAS1LQ9Y4W2 734 aaKnown RBP18.03■□□□□ 0.48
PTPN1-202ENST00000541713 DISP3Q9P2K9 1392 aa18.03■□□□□ 0.48
PTPN1-202ENST00000541713 KIF3BO15066 747 aa18.02■□□□□ 0.48
PTPN1-202ENST00000541713 ADAMTS8Q9UP79 889 aa18.02■□□□□ 0.48
PTPN1-202ENST00000541713 KNSTRNQ9Y448 316 aa18.02■□□□□ 0.48
PTPN1-202ENST00000541713 PLEKHH2Q8IVE3 1493 aa18.02■□□□□ 0.48
PTPN1-202ENST00000541713 ANP32AP39687 249 aaKnown RBP18.02■□□□□ 0.48
PTPN1-202ENST00000541713 TMF1P82094 1093 aa18.02■□□□□ 0.47
PTPN1-202ENST00000541713 RRP1P56182 461 aaKnown RBP18.01■□□□□ 0.47
PTPN1-202ENST00000541713 RALBP1Q15311 655 aa18.01■□□□□ 0.47
PTPN1-202ENST00000541713 C20orf194Q5TEA3 1177 aa18■□□□□ 0.47
PTPN1-202ENST00000541713 ARHGAP5Q13017 1502 aa18■□□□□ 0.47
PTPN1-202ENST00000541713 SAFB2Q14151 953 aaKnown RBP eCLIP18■□□□□ 0.47
PTPN1-202ENST00000541713 WDR43Q15061 677 aaKnown RBP eCLIP18■□□□□ 0.47
PTPN1-202ENST00000541713 BCL11AQ9H165 835 aa18■□□□□ 0.47
PTPN1-202ENST00000541713 NOP58Q9Y2X3 529 aaKnown RBP17.99■□□□□ 0.47
PTPN1-202ENST00000541713 FANCIQ9NVI1 1328 aa17.98■□□□□ 0.47
PTPN1-202ENST00000541713 CRBNQ96SW2 442 aa17.98■□□□□ 0.47
PTPN1-202ENST00000541713 EFCAB2Q5VUJ9 269 aa17.97■□□□□ 0.47
PTPN1-202ENST00000541713 SMG6Q86US8 1419 aaKnown RBP17.97■□□□□ 0.47
PTPN1-202ENST00000541713 ZBTB47Q9UFB7 747 aaPredicted RBP17.96■□□□□ 0.47
PTPN1-202ENST00000541713 SPAG9O60271 1321 aaKnown RBP17.96■□□□□ 0.47
PTPN1-202ENST00000541713 SLC4A3P48751 1232 aa17.95■□□□□ 0.46
PTPN1-202ENST00000541713 CFAP70Q5T0N1 1121 aa17.95■□□□□ 0.46
PTPN1-202ENST00000541713 ERICH6BQ5W0A0 696 aa17.95■□□□□ 0.46
PTPN1-202ENST00000541713 GGT6Q6P531 493 aa17.95■□□□□ 0.46
PTPN1-202ENST00000541713 TESK2Q96S53 571 aa17.95■□□□□ 0.46
PTPN1-202ENST00000541713 PER1O15534 1290 aaPredicted RBP17.94■□□□□ 0.46
PTPN1-202ENST00000541713 RGS3P49796 1198 aa17.94■□□□□ 0.46
PTPN1-202ENST00000541713 SYCP2Q9BX26 1530 aa17.93■□□□□ 0.46
PTPN1-202ENST00000541713 NUP160Q12769 1436 aa17.93■□□□□ 0.46
PTPN1-202ENST00000541713 RRP7AQ9Y3A4 280 aaKnown RBP17.92■□□□□ 0.46
PTPN1-202ENST00000541713 ABCC10Q5T3U5 1492 aa17.92■□□□□ 0.46
PTPN1-202ENST00000541713 CCDC141Q6ZP82 1450 aa17.9■□□□□ 0.46
PTPN1-202ENST00000541713 TRAK1Q9UPV9 953 aa17.9■□□□□ 0.46
PTPN1-202ENST00000541713 MBD5Q9P267 1494 aa17.9■□□□□ 0.46
PTPN1-202ENST00000541713 DEKP35659 375 aaKnown RBP17.89■□□□□ 0.46
PTPN1-202ENST00000541713 TMEM132EQ6IEE7 984 aa17.89■□□□□ 0.46
PTPN1-202ENST00000541713 BRD4O60885 1362 aaPredicted RBP17.89■□□□□ 0.45
PTPN1-202ENST00000541713 RALGAPBQ86X10 1494 aa17.89■□□□□ 0.45
PTPN1-202ENST00000541713 FAM135AQ9P2D6 1515 aa17.89■□□□□ 0.45
PTPN1-202ENST00000541713 ERCC6L2Q5T890 1561 aa17.89■□□□□ 0.45
PTPN1-202ENST00000541713 APAF1O14727 1248 aa17.88■□□□□ 0.45
PTPN1-202ENST00000541713 ADGRL2O95490 1459 aa17.88■□□□□ 0.45
PTPN1-202ENST00000541713 KDM5CP41229 1560 aa17.87■□□□□ 0.45
PTPN1-202ENST00000541713 ITSN2Q9NZM3 1697 aa17.87■□□□□ 0.45
PTPN1-202ENST00000541713 PRAG1Q86YV5 1406 aa17.87■□□□□ 0.45
PTPN1-202ENST00000541713 RSPH4AQ5TD94 716 aa17.86■□□□□ 0.45
PTPN1-202ENST00000541713 CDC42BPAQ5VT25 1732 aa17.86■□□□□ 0.45
PTPN1-202ENST00000541713 PDE4AP27815 886 aa17.86■□□□□ 0.45
PTPN1-202ENST00000541713 PPP2R1AP30153 589 aa17.86■□□□□ 0.45
PTPN1-202ENST00000541713 RTL5Q5HYW3 569 aaPredicted RBP17.86■□□□□ 0.45
PTPN1-202ENST00000541713 PLA2R1Q13018 1463 aa17.85■□□□□ 0.45
PTPN1-202ENST00000541713 ARID4BQ4LE39 1312 aaPredicted RBP17.85■□□□□ 0.45
PTPN1-202ENST00000541713 TRAPPC8Q9Y2L5 1435 aa17.85■□□□□ 0.45
PTPN1-202ENST00000541713 FRAT1Q92837 279 aaPredicted RBP17.84■□□□□ 0.45
PTPN1-202ENST00000541713 BCL2L13Q9BXK5 485 aa17.84■□□□□ 0.45
PTPN1-202ENST00000541713 CANXP27824 592 aaKnown RBP17.84■□□□□ 0.45
PTPN1-202ENST00000541713 ERBINQ96RT1 1412 aa17.84■□□□□ 0.45
PTPN1-202ENST00000541713 A2MP01023 1474 aa17.84■□□□□ 0.45
PTPN1-202ENST00000541713 IPO9Q96P70 1041 aaKnown RBP17.84■□□□□ 0.45
PTPN1-202ENST00000541713 STK26Q9P289 416 aa17.82■□□□□ 0.44
PTPN1-202ENST00000541713 BCAR3O75815 825 aa17.81■□□□□ 0.44
PTPN1-202ENST00000541713 SPINK5Q9NQ38 1064 aaPredicted RBP17.81■□□□□ 0.44
PTPN1-202ENST00000541713 ABCA8O94911 1581 aa17.81■□□□□ 0.44
PTPN1-202ENST00000541713 SAMD9LQ8IVG5 1584 aa17.81■□□□□ 0.44
PTPN1-202ENST00000541713 UHRF1BP1Q6BDS2 1440 aa17.81■□□□□ 0.44
PTPN1-202ENST00000541713 ADGRF5Q8IZF2 1346 aa17.8■□□□□ 0.44
PTPN1-202ENST00000541713 SCAPERQ9BY12 1400 aa17.8■□□□□ 0.44
PTPN1-202ENST00000541713 ADGBQ8N7X0 1667 aa17.79■□□□□ 0.44
PTPN1-202ENST00000541713 DMRT2Q9Y5R5 561 aa17.79■□□□□ 0.44
PTPN1-202ENST00000541713 RTN4Q9NQC3 1192 aaKnown RBP17.78■□□□□ 0.44
PTPN1-202ENST00000541713 LRPPRCP42704 1394 aaKnown RBP17.78■□□□□ 0.44
PTPN1-202ENST00000541713 ARHGEF12Q9NZN5 1544 aa17.78■□□□□ 0.44
PTPN1-202ENST00000541713 SLC12A5Q9H2X9 1139 aa17.78■□□□□ 0.44
PTPN1-202ENST00000541713 PARD3Q8TEW0 1356 aa17.77■□□□□ 0.44
PTPN1-202ENST00000541713 CLUAP1Q96AJ1 413 aa17.77■□□□□ 0.44
PTPN1-202ENST00000541713 TTC37Q6PGP7 1564 aa17.76■□□□□ 0.43
PTPN1-202ENST00000541713 GOLGA2Q08379 1002 aa17.76■□□□□ 0.43
PTPN1-202ENST00000541713 RNF123Q5XPI4 1314 aa17.76■□□□□ 0.43
PTPN1-202ENST00000541713 DAXXQ9UER7 740 aaPredicted RBP17.75■□□□□ 0.43
PTPN1-202ENST00000541713 PLEKHH1Q9ULM0 1364 aa17.75■□□□□ 0.43
PTPN1-202ENST00000541713 NEFMP07197 916 aa17.74■□□□□ 0.43
PTPN1-202ENST00000541713 AMER1Q5JTC6 1135 aaPredicted RBP17.73■□□□□ 0.43
PTPN1-202ENST00000541713 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.73■□□□□ 0.436e-6■■■■□ 21.5
PTPN1-202ENST00000541713 PDE3BQ13370 1112 aa17.71■□□□□ 0.43
PTPN1-202ENST00000541713 MORC1Q86VD1 984 aa17.71■□□□□ 0.43
PTPN1-202ENST00000541713 PANK1Q8TE04 598 aa17.71■□□□□ 0.43
PTPN1-202ENST00000541713 NPM1P06748 294 aaKnown RBP eCLIP17.71■□□□□ 0.43
PTPN1-202ENST00000541713 CARD14Q9BXL6 1004 aa17.71■□□□□ 0.43
PTPN1-202ENST00000541713 COG6Q9Y2V7 657 aa17.71■□□□□ 0.43
PTPN1-202ENST00000541713 PPM1GO15355 546 aaPredicted RBP17.71■□□□□ 0.43
PTPN1-202ENST00000541713 SHANK2Q9UPX8 1470 aa17.71■□□□□ 0.43
PTPN1-202ENST00000541713 RAPGEF3O95398 923 aa17.7■□□□□ 0.42
PTPN1-202ENST00000541713 TCERG1O14776 1098 aaKnown RBP17.7■□□□□ 0.42
PTPN1-202ENST00000541713 DUSP27Q5VZP5 1158 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms