RNA–Protein interactions for RNA: ENST00000541589.5

LMO3-226, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 1,499 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-226ENST00000541589 KIF14Q15058 1648 aa12.7□□□□□ -0.38
LMO3-226ENST00000541589 MED1Q15648 1581 aaPredicted RBP12.7□□□□□ -0.38
LMO3-226ENST00000541589 PKD2Q13563 968 aa12.69□□□□□ -0.38
LMO3-226ENST00000541589 MYT1LQ9UL68 1186 aa12.69□□□□□ -0.38
LMO3-226ENST00000541589 PLA2R1Q13018 1463 aa12.69□□□□□ -0.38
LMO3-226ENST00000541589 TCOF1Q13428 1488 aaKnown RBP12.69□□□□□ -0.38
LMO3-226ENST00000541589 TROQ12816 1431 aaPredicted RBP12.68□□□□□ -0.38
LMO3-226ENST00000541589 EVX2Q03828 476 aa12.68□□□□□ -0.38
LMO3-226ENST00000541589 TRIM26Q12899 539 aaPredicted RBP12.68□□□□□ -0.38
LMO3-226ENST00000541589 CDK11AQ9UQ88 783 aaPredicted RBP12.68□□□□□ -0.38
LMO3-226ENST00000541589 ZMYM3Q14202 1370 aa12.67□□□□□ -0.38
LMO3-226ENST00000541589 HSPA1LP34931 641 aa12.67□□□□□ -0.38
LMO3-226ENST00000541589 MROH2AA6NES4 1674 aa12.67□□□□□ -0.38
LMO3-226ENST00000541589 PITPNM1O00562 1244 aa12.66□□□□□ -0.38
LMO3-226ENST00000541589 PCGF6Q9BYE7 350 aa12.66□□□□□ -0.38
LMO3-226ENST00000541589 ABCC1P33527 1531 aa12.65□□□□□ -0.38
LMO3-226ENST00000541589 KIDINS220Q9ULH0 1771 aa12.65□□□□□ -0.38
LMO3-226ENST00000541589 FMN1Q68DA7 1419 aa12.65□□□□□ -0.39
LMO3-226ENST00000541589 VPS8Q8N3P4 1428 aa12.65□□□□□ -0.39
LMO3-226ENST00000541589 CDC42BPBQ9Y5S2 1711 aa12.64□□□□□ -0.39
LMO3-226ENST00000541589 ZNF142P52746 1687 aaPredicted RBP12.64□□□□□ -0.39
LMO3-226ENST00000541589 ATP1B4Q9UN42 357 aaPredicted RBP12.62□□□□□ -0.39
LMO3-226ENST00000541589 CEP170BQ9Y4F5 1589 aaPredicted RBP12.62□□□□□ -0.39
LMO3-226ENST00000541589 MYO3AQ8NEV4 1616 aa12.62□□□□□ -0.39
LMO3-226ENST00000541589 PTPRKQ15262 1439 aa12.61□□□□□ -0.39
LMO3-226ENST00000541589 ITSN2Q9NZM3 1697 aa12.61□□□□□ -0.39
LMO3-226ENST00000541589 TOM1O60784 492 aa12.6□□□□□ -0.39
LMO3-226ENST00000541589 LHX8Q68G74 356 aa12.6□□□□□ -0.39
LMO3-226ENST00000541589 PREX2Q70Z35 1606 aa12.6□□□□□ -0.39
LMO3-226ENST00000541589 PIP4K2BP78356 416 aa12.59□□□□□ -0.39
LMO3-226ENST00000541589 ARHGAP35Q9NRY4 1499 aa12.58□□□□□ -0.4
LMO3-226ENST00000541589 CPS1P31327 1500 aa12.58□□□□□ -0.4
LMO3-226ENST00000541589 SAMD9LQ8IVG5 1584 aa12.58□□□□□ -0.4
LMO3-226ENST00000541589 ALKQ9UM73 1620 aa12.57□□□□□ -0.4
LMO3-226ENST00000541589 CLTCQ00610 1675 aaKnown RBP12.56□□□□□ -0.4
LMO3-226ENST00000541589 PLXNC1O60486 1568 aa12.56□□□□□ -0.4
LMO3-226ENST00000541589 SHANK2Q9UPX8 1470 aa12.56□□□□□ -0.4
LMO3-226ENST00000541589 LRRIQ1Q96JM4 1722 aa12.55□□□□□ -0.4
LMO3-226ENST00000541589 A2ML1A8K2U0 1454 aa12.55□□□□□ -0.4
LMO3-226ENST00000541589 SPDYE1Q8NFV5 336 aaPredicted RBP12.55□□□□□ -0.4
LMO3-226ENST00000541589 FXR2P51116 673 aaKnown RBP eCLIP12.54□□□□□ -0.4
LMO3-226ENST00000541589 SUPT6HQ7KZ85 1726 aaKnown RBP12.54□□□□□ -0.4
LMO3-226ENST00000541589 DNMT1P26358 1616 aaKnown RBP12.54□□□□□ -0.4
LMO3-226ENST00000541589 NEURL4Q96JN8 1562 aa12.54□□□□□ -0.4
LMO3-226ENST00000541589 SPAG9O60271 1321 aaKnown RBP12.54□□□□□ -0.4
LMO3-226ENST00000541589 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
LMO3-226ENST00000541589 PPARGC1BQ86YN6 1023 aaKnown RBP12.53□□□□□ -0.4
LMO3-226ENST00000541589 A2MP01023 1474 aa12.52□□□□□ -0.4
LMO3-226ENST00000541589 CDC42BPAQ5VT25 1732 aa12.52□□□□□ -0.41
LMO3-226ENST00000541589 VWDEQ8N2E2 1590 aa12.51□□□□□ -0.41
LMO3-226ENST00000541589 ATP7AQ04656 1500 aa12.51□□□□□ -0.41
LMO3-226ENST00000541589 SYCP2Q9BX26 1530 aa12.51□□□□□ -0.41
LMO3-226ENST00000541589 GGT6Q6P531 493 aa12.51□□□□□ -0.41
LMO3-226ENST00000541589 RGS17Q9UGC6 210 aaPredicted RBP12.51□□□□□ -0.41
LMO3-226ENST00000541589 HNRNPMP52272 730 aaKnown RBP eCLIP12.5□□□□□ -0.41
LMO3-226ENST00000541589 KIAA1107Q9UPP5 1409 aa12.5□□□□□ -0.41
LMO3-226ENST00000541589 INO80Q9ULG1 1556 aaPredicted RBP12.5□□□□□ -0.41
LMO3-226ENST00000541589 CLEC11AQ9Y240 323 aa12.49□□□□□ -0.41
LMO3-226ENST00000541589 CCDC18Q5T9S5 1454 aa12.49□□□□□ -0.41
LMO3-226ENST00000541589 POLR1AO95602 1720 aaPredicted RBP12.48□□□□□ -0.41
LMO3-226ENST00000541589 ZNF777Q9ULD5 760 aaPredicted RBP12.48□□□□□ -0.41
LMO3-226ENST00000541589 GPATCH8Q9UKJ3 1502 aaKnown RBP12.48□□□□□ -0.41
LMO3-226ENST00000541589 MED14O60244 1454 aa12.47□□□□□ -0.41
LMO3-226ENST00000541589 CASKIN1Q8WXD9 1431 aa12.47□□□□□ -0.41
LMO3-226ENST00000541589 ANKLE2Q86XL3 938 aa12.46□□□□□ -0.42
LMO3-226ENST00000541589 TNRQ92752 1358 aa12.46□□□□□ -0.42
LMO3-226ENST00000541589 PLEKHH2Q8IVE3 1493 aa12.45□□□□□ -0.42
LMO3-226ENST00000541589 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.45□□□□□ -0.42
LMO3-226ENST00000541589 FBXO31Q5XUX0 539 aaPredicted RBP12.45□□□□□ -0.42
LMO3-226ENST00000541589 LRRC7Q96NW7 1537 aa12.44□□□□□ -0.42
LMO3-226ENST00000541589 NPHP4O75161 1426 aaPredicted RBP12.44□□□□□ -0.42
LMO3-226ENST00000541589 PZPP20742 1482 aa12.43□□□□□ -0.42
LMO3-226ENST00000541589 DEPDC5O75140 1603 aa12.43□□□□□ -0.42
LMO3-226ENST00000541589 MAP3K1Q13233 1512 aa12.43□□□□□ -0.42
LMO3-226ENST00000541589 THEMISQ8N1K5 641 aaPredicted RBP12.42□□□□□ -0.42
LMO3-226ENST00000541589 ADGBQ8N7X0 1667 aa12.42□□□□□ -0.42
LMO3-226ENST00000541589 CFDP1Q9UEE9 299 aaPredicted RBP12.41□□□□□ -0.42
LMO3-226ENST00000541589 DHX29Q7Z478 1369 aaKnown RBP12.41□□□□□ -0.42
LMO3-226ENST00000541589 STRCP1A6NGW2 1772 aa12.41□□□□□ -0.42
LMO3-226ENST00000541589 MIA2Q96PC5 1412 aa12.41□□□□□ -0.42
LMO3-226ENST00000541589 RNF17Q9BXT8 1623 aaKnown RBP12.4□□□□□ -0.42
LMO3-226ENST00000541589 HRCP23327 699 aa12.4□□□□□ -0.42
LMO3-226ENST00000541589 NLRP1Q9C000 1473 aa12.4□□□□□ -0.42
LMO3-226ENST00000541589 RTEL1-TNFRSF6BF6WH68 1400 aa12.4□□□□□ -0.42
LMO3-226ENST00000541589 POTEAQ6S8J7 498 aa12.4□□□□□ -0.43
LMO3-226ENST00000541589 FAM135AQ9P2D6 1515 aa12.39□□□□□ -0.43
LMO3-226ENST00000541589 UGGT1Q9NYU2 1555 aa12.39□□□□□ -0.43
LMO3-226ENST00000541589 FYCO1Q9BQS8 1478 aa12.39□□□□□ -0.43
LMO3-226ENST00000541589 MBD5Q9P267 1494 aa12.39□□□□□ -0.43
LMO3-226ENST00000541589 SYNMO15061 1565 aa12.39□□□□□ -0.43
LMO3-226ENST00000541589 TIAM1Q13009 1591 aa12.39□□□□□ -0.43
LMO3-226ENST00000541589 KDM5DQ9BY66 1539 aa12.38□□□□□ -0.43
LMO3-226ENST00000541589 IQGAP1P46940 1657 aa12.38□□□□□ -0.43
LMO3-226ENST00000541589 CCNB3Q8WWL7 1395 aa12.37□□□□□ -0.43
LMO3-226ENST00000541589 ZNF644Q9H582 1327 aaPredicted RBP12.36□□□□□ -0.43
LMO3-226ENST00000541589 KIF3BO15066 747 aa12.35□□□□□ -0.43
LMO3-226ENST00000541589 PRR29P0C7W0 189 aa12.34□□□□□ -0.43
LMO3-226ENST00000541589 KANK4Q5T7N3 995 aaPredicted RBP12.34□□□□□ -0.43
LMO3-226ENST00000541589 PROM2Q8N271 834 aa12.34□□□□□ -0.43
LMO3-226ENST00000541589 WASHC2CQ9Y4E1 1318 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms