RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 FOXD1Q16676 465 aa15.8■□□□□ 0.12
YBX3-211ENST00000541351 UPF1Q92900 1129 aaKnown RBP eCLIP15.8■□□□□ 0.12
YBX3-211ENST00000541351 PLEKHH2Q8IVE3 1493 aa15.79■□□□□ 0.12
YBX3-211ENST00000541351 ZNF777Q9ULD5 760 aaPredicted RBP15.79■□□□□ 0.12
YBX3-211ENST00000541351 UGGT1Q9NYU2 1555 aa15.79■□□□□ 0.12
YBX3-211ENST00000541351 IQGAP1P46940 1657 aa15.78■□□□□ 0.12
YBX3-211ENST00000541351 PZPP20742 1482 aa15.76■□□□□ 0.11
YBX3-211ENST00000541351 KIAA1107Q9UPP5 1409 aa15.76■□□□□ 0.11
YBX3-211ENST00000541351 ZNF772Q68DY9 489 aaPredicted RBP15.75■□□□□ 0.11
YBX3-211ENST00000541351 SETD1AO15047 1707 aaKnown RBP15.74■□□□□ 0.11
YBX3-211ENST00000541351 SYCP2Q9BX26 1530 aa15.74■□□□□ 0.11
YBX3-211ENST00000541351 MIA2Q96PC5 1412 aa15.74■□□□□ 0.11
YBX3-211ENST00000541351 CCDC18Q5T9S5 1454 aa15.73■□□□□ 0.11
YBX3-211ENST00000541351 HNRNPMP52272 730 aaKnown RBP eCLIP15.73■□□□□ 0.11
YBX3-211ENST00000541351 KDM5DQ9BY66 1539 aa15.73■□□□□ 0.11
YBX3-211ENST00000541351 INO80Q9ULG1 1556 aaPredicted RBP15.72■□□□□ 0.11
YBX3-211ENST00000541351 FBXO31Q5XUX0 539 aaPredicted RBP15.72■□□□□ 0.11
YBX3-211ENST00000541351 ADGBQ8N7X0 1667 aa15.72■□□□□ 0.11
YBX3-211ENST00000541351 WASHC2CQ9Y4E1 1318 aa15.71■□□□□ 0.11
YBX3-211ENST00000541351 JCADQ9P266 1359 aa15.7■□□□□ 0.1
YBX3-211ENST00000541351 LRRC9Q6ZRR7 1453 aa15.7■□□□□ 0.1
YBX3-211ENST00000541351 CDC42BPAQ5VT25 1732 aa15.68■□□□□ 0.1
YBX3-211ENST00000541351 MEX3CQ5U5Q3 659 aaKnown RBP15.68■□□□□ 0.1
YBX3-211ENST00000541351 CFDP1Q9UEE9 299 aaPredicted RBP15.68■□□□□ 0.1
YBX3-211ENST00000541351 TRIM52Q96A61 297 aa15.67■□□□□ 0.1
YBX3-211ENST00000541351 DHX29Q7Z478 1369 aaKnown RBP15.66■□□□□ 0.1
YBX3-211ENST00000541351 STRCP1A6NGW2 1772 aa15.66■□□□□ 0.1
YBX3-211ENST00000541351 KIF3BO15066 747 aa15.65■□□□□ 0.1
YBX3-211ENST00000541351 UBTFP17480 764 aaKnown RBP15.65■□□□□ 0.1
YBX3-211ENST00000541351 RXRBP28702 533 aa15.65■□□□□ 0.1
YBX3-211ENST00000541351 RTEL1-TNFRSF6BF6WH68 1400 aa15.65■□□□□ 0.1
YBX3-211ENST00000541351 EID1Q9Y6B2 187 aa15.64■□□□□ 0.09
YBX3-211ENST00000541351 ARHGAP35Q9NRY4 1499 aa15.64■□□□□ 0.09
YBX3-211ENST00000541351 SPATA31A6Q5VVP1 1343 aa15.64■□□□□ 0.09
YBX3-211ENST00000541351 SCAF11Q99590 1463 aaKnown RBP15.63■□□□□ 0.09
YBX3-211ENST00000541351 GPATCH8Q9UKJ3 1502 aaKnown RBP15.63■□□□□ 0.09
YBX3-211ENST00000541351 CDK12Q9NYV4 1490 aaPredicted RBP15.62■□□□□ 0.09
YBX3-211ENST00000541351 ROBO1Q9Y6N7 1651 aa15.61■□□□□ 0.09
YBX3-211ENST00000541351 CCNB3Q8WWL7 1395 aa15.61■□□□□ 0.09
YBX3-211ENST00000541351 CASKIN1Q8WXD9 1431 aa15.6■□□□□ 0.09
YBX3-211ENST00000541351 TXNDC2Q86VQ3 553 aa15.59■□□□□ 0.09
YBX3-211ENST00000541351 TMEM94Q12767 1356 aa15.59■□□□□ 0.09
YBX3-211ENST00000541351 ZC3H13Q5T200 1668 aaKnown RBP15.58■□□□□ 0.08
YBX3-211ENST00000541351 ZRANB1Q9UGI0 708 aa15.58■□□□□ 0.08
YBX3-211ENST00000541351 FGD6Q6ZV73 1430 aa15.58■□□□□ 0.08
YBX3-211ENST00000541351 MSH6P52701 1360 aa15.57■□□□□ 0.08
YBX3-211ENST00000541351 PROSER2Q86WR7 435 aaPredicted RBP15.56■□□□□ 0.08
YBX3-211ENST00000541351 SRCAPQ6ZRS2 3230 aa15.56■□□□□ 0.08
YBX3-211ENST00000541351 LRRIQ1Q96JM4 1722 aa15.55■□□□□ 0.08
YBX3-211ENST00000541351 PHLPP1O60346 1717 aa15.54■□□□□ 0.08
YBX3-211ENST00000541351 KCNA6P17658 529 aa15.54■□□□□ 0.08
YBX3-211ENST00000541351 RSPH4AQ5TD94 716 aa15.54■□□□□ 0.08
YBX3-211ENST00000541351 SLAIN2Q9P270 581 aa15.54■□□□□ 0.08
YBX3-211ENST00000541351 XIRP1Q702N8 1843 aaKnown RBP15.53■□□□□ 0.08
YBX3-211ENST00000541351 SLIT1O75093 1534 aa15.52■□□□□ 0.07
YBX3-211ENST00000541351 CHIC1Q5VXU3 224 aa15.51■□□□□ 0.07
YBX3-211ENST00000541351 ABCC3O15438 1527 aa15.51■□□□□ 0.07
YBX3-211ENST00000541351 LTKP29376 864 aa15.5■□□□□ 0.07
YBX3-211ENST00000541351 NKTRP30414 1462 aaKnown RBP15.5■□□□□ 0.07
YBX3-211ENST00000541351 ERVK-7P63135 1459 aa15.5■□□□□ 0.07
YBX3-211ENST00000541351 FYCO1Q9BQS8 1478 aa15.5■□□□□ 0.07
YBX3-211ENST00000541351 ARHGAP23Q9P227 1491 aa15.5■□□□□ 0.07
YBX3-211ENST00000541351 PRDM15P57071 1507 aaPredicted RBP15.48■□□□□ 0.07
YBX3-211ENST00000541351 NUTM2BA6NNL0 878 aaPredicted RBP15.48■□□□□ 0.07
YBX3-211ENST00000541351 NUTM2EB1AL46 878 aaPredicted RBP15.48■□□□□ 0.07
YBX3-211ENST00000541351 NUTM2DQ5VT03 806 aaPredicted RBP15.48■□□□□ 0.07
YBX3-211ENST00000541351 NUTM2AQ8IVF1 878 aaPredicted RBP15.48■□□□□ 0.07
YBX3-211ENST00000541351 STAG3Q9UJ98 1225 aa15.48■□□□□ 0.07
YBX3-211ENST00000541351 UBR1Q8IWV7 1749 aa15.48■□□□□ 0.07
YBX3-211ENST00000541351 MBD5Q9P267 1494 aa15.47■□□□□ 0.07
YBX3-211ENST00000541351 MAP3K1Q13233 1512 aa15.47■□□□□ 0.07
YBX3-211ENST00000541351 ATAD2Q6PL18 1390 aa15.47■□□□□ 0.07
YBX3-211ENST00000541351 LRP6O75581 1613 aa15.46■□□□□ 0.07
YBX3-211ENST00000541351 RBM6P78332 1123 aaKnown RBP15.46■□□□□ 0.07
YBX3-211ENST00000541351 MTUS2Q5JR59 1369 aa15.46■□□□□ 0.07
YBX3-211ENST00000541351 CCDC141Q6ZP82 1450 aa15.46■□□□□ 0.06
YBX3-211ENST00000541351 TSPY4P0CV99 314 aa15.45■□□□□ 0.06
YBX3-211ENST00000541351 TSPY10P0CW01 314 aa15.45■□□□□ 0.06
YBX3-211ENST00000541351 NGLY1Q96IV0 654 aa15.45■□□□□ 0.06
YBX3-211ENST00000541351 COL16A1Q07092 1604 aaPredicted RBP15.45■□□□□ 0.06
YBX3-211ENST00000541351 NCOA2Q15596 1464 aa15.44■□□□□ 0.06
YBX3-211ENST00000541351 TIAM1Q13009 1591 aa15.44■□□□□ 0.06
YBX3-211ENST00000541351 TMEM2Q9UHN6 1383 aa15.43■□□□□ 0.06
YBX3-211ENST00000541351 AFF2P51816 1311 aa15.43■□□□□ 0.06
YBX3-211ENST00000541351 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
YBX3-211ENST00000541351 ZNF644Q9H582 1327 aaPredicted RBP15.42■□□□□ 0.06
YBX3-211ENST00000541351 SHPRHQ149N8 1683 aa15.41■□□□□ 0.06
YBX3-211ENST00000541351 CADPS2Q86UW7 1296 aa15.41■□□□□ 0.06
YBX3-211ENST00000541351 CCDC125Q86Z20 511 aa15.41■□□□□ 0.06
YBX3-211ENST00000541351 QTRT2Q9H974 415 aaKnown RBP15.4■□□□□ 0.06
YBX3-211ENST00000541351 NCOA3Q9Y6Q9 1424 aa15.4■□□□□ 0.06
YBX3-211ENST00000541351 C14orf37Q86TY3 774 aa15.39■□□□□ 0.05
YBX3-211ENST00000541351 BCANQ96GW7 911 aa15.39■□□□□ 0.05
YBX3-211ENST00000541351 RGS12O14924 1447 aa15.39■□□□□ 0.05
YBX3-211ENST00000541351 RBM33Q96EV2 1170 aaKnown RBP15.38■□□□□ 0.05
YBX3-211ENST00000541351 SLC26A8Q96RN1 970 aa15.38■□□□□ 0.05
YBX3-211ENST00000541351 CAMSAP2Q08AD1 1489 aa15.38■□□□□ 0.05
YBX3-211ENST00000541351 NWD1Q149M9 1564 aa15.37■□□□□ 0.05
YBX3-211ENST00000541351 AHDC1Q5TGY3 1603 aaPredicted RBP15.37■□□□□ 0.05
YBX3-211ENST00000541351 ATF3P18847 181 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms