RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	MLH3	Q9UHC1	1453 aa		14.06	□□□□□ -0.16
DDX55-208	ENST00000541259	ZMYM4	Q5VZL5	1548 aa		14.05	□□□□□ -0.16
DDX55-208	ENST00000541259	ROCK1	Q13464	1354 aa		14.05	□□□□□ -0.16
DDX55-208	ENST00000541259	PLXNC1	O60486	1568 aa		14.05	□□□□□ -0.16
DDX55-208	ENST00000541259	ABCA6	Q8N139	1617 aa		14.04	□□□□□ -0.16
DDX55-208	ENST00000541259	GCC2	Q8IWJ2	1684 aa		14.04	□□□□□ -0.16
DDX55-208	ENST00000541259	ANKRD30A	Q9BXX3	1397 aa		14.04	□□□□□ -0.16
DDX55-208	ENST00000541259	NAIP	Q13075	1403 aa		14.03	□□□□□ -0.16
DDX55-208	ENST00000541259	YEATS2	Q9ULM3	1422 aa		14.03	□□□□□ -0.16
DDX55-208	ENST00000541259	DIP2C	Q9Y2E4	1556 aa		14.02	□□□□□ -0.16
DDX55-208	ENST00000541259	HFM1	A2PYH4	1435 aa		14.02	□□□□□ -0.16
DDX55-208	ENST00000541259	KIF15	Q9NS87	1388 aa		14.01	□□□□□ -0.17
DDX55-208	ENST00000541259	SETD5	Q9C0A6	1442 aa		14	□□□□□ -0.17
DDX55-208	ENST00000541259	MAGI2	Q86UL8	1455 aa		13.99	□□□□□ -0.17
DDX55-208	ENST00000541259	DUOX2	Q9NRD8	1548 aa		13.99	□□□□□ -0.17
DDX55-208	ENST00000541259	SIGLEC1	Q9BZZ2	1709 aa		13.98	□□□□□ -0.17
DDX55-208	ENST00000541259	RAB3GAP2	Q9H2M9	1393 aa		13.97	□□□□□ -0.17
DDX55-208	ENST00000541259	ARHGEF40	Q8TER5	1519 aa		13.97	□□□□□ -0.17
DDX55-208	ENST00000541259	ANKRD50	Q9ULJ7	1429 aa		13.97	□□□□□ -0.17
DDX55-208	ENST00000541259	DHX29	Q7Z478	1369 aa	Known RBP	13.96	□□□□□ -0.17
DDX55-208	ENST00000541259	ATP10A	O60312	1499 aa		13.96	□□□□□ -0.17
DDX55-208	ENST00000541259	A2M	P01023	1474 aa		13.96	□□□□□ -0.17
DDX55-208	ENST00000541259	C1QBP	Q07021	282 aa	Known RBP	13.95	□□□□□ -0.18
DDX55-208	ENST00000541259	ERBIN	Q96RT1	1412 aa		13.93	□□□□□ -0.18
DDX55-208	ENST00000541259	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.92	□□□□□ -0.18
DDX55-208	ENST00000541259	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.92	□□□□□ -0.18
DDX55-208	ENST00000541259	RERE	Q9P2R6	1566 aa		13.92	□□□□□ -0.18
DDX55-208	ENST00000541259	BCORL1	Q5H9F3	1711 aa		13.91	□□□□□ -0.18
DDX55-208	ENST00000541259	KIF3B	O15066	747 aa		13.91	□□□□□ -0.18
DDX55-208	ENST00000541259	DEPDC5	O75140	1603 aa		13.9	□□□□□ -0.19
DDX55-208	ENST00000541259	HRC	P23327	699 aa		13.89	□□□□□ -0.19
DDX55-208	ENST00000541259	TRIM52	Q96A61	297 aa		13.89	□□□□□ -0.19
DDX55-208	ENST00000541259	UNC13B	O14795	1591 aa		13.88	□□□□□ -0.19
DDX55-208	ENST00000541259	MROH1	Q8NDA8	1641 aa		13.88	□□□□□ -0.19
DDX55-208	ENST00000541259	RNF17	Q9BXT8	1623 aa	Known RBP	13.88	□□□□□ -0.19
DDX55-208	ENST00000541259	AGL	P35573	1532 aa		13.87	□□□□□ -0.19
DDX55-208	ENST00000541259	GGT6	Q6P531	493 aa		13.86	□□□□□ -0.19
DDX55-208	ENST00000541259	CEP152	O94986	1710 aa		13.86	□□□□□ -0.19
DDX55-208	ENST00000541259	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.85	□□□□□ -0.19
DDX55-208	ENST00000541259	NUP155	O75694	1391 aa		13.84	□□□□□ -0.19
DDX55-208	ENST00000541259	CFAP65	Q6ZU64	1925 aa	Known RBP	13.84	□□□□□ -0.19
DDX55-208	ENST00000541259	MLEC	Q14165	292 aa		13.84	□□□□□ -0.19
DDX55-208	ENST00000541259	PZP	P20742	1482 aa		13.84	□□□□□ -0.19
DDX55-208	ENST00000541259	IQGAP3	Q86VI3	1631 aa		13.83	□□□□□ -0.2
DDX55-208	ENST00000541259	PRDM15	P57071	1507 aa	Predicted RBP	13.83	□□□□□ -0.2
DDX55-208	ENST00000541259	KDM5D	Q9BY66	1539 aa		13.83	□□□□□ -0.2
DDX55-208	ENST00000541259	VWDE	Q8N2E2	1590 aa		13.83	□□□□□ -0.2
DDX55-208	ENST00000541259	CAPN15	O75808	1086 aa		13.82	□□□□□ -0.2
DDX55-208	ENST00000541259	DHX57	Q6P158	1386 aa	Known RBP	13.82	□□□□□ -0.2
DDX55-208	ENST00000541259	FAM135A	Q9P2D6	1515 aa		13.81	□□□□□ -0.2
DDX55-208	ENST00000541259	MPHOSPH9	Q99550	1183 aa		13.81	□□□□□ -0.2
DDX55-208	ENST00000541259	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.81	□□□□□ -0.2
DDX55-208	ENST00000541259	CLTC	Q00610	1675 aa	Known RBP	13.8	□□□□□ -0.2
DDX55-208	ENST00000541259	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.79	□□□□□ -0.2
DDX55-208	ENST00000541259	ACIN1	Q9UKV3	1341 aa	Known RBP	13.79	□□□□□ -0.2
DDX55-208	ENST00000541259	KANK1	Q14678	1352 aa		13.79	□□□□□ -0.2
DDX55-208	ENST00000541259	ABCC3	O15438	1527 aa		13.79	□□□□□ -0.2
DDX55-208	ENST00000541259	TET3	O43151	1660 aa		13.79	□□□□□ -0.2
DDX55-208	ENST00000541259	WASHC2C	Q9Y4E1	1318 aa		13.78	□□□□□ -0.2
DDX55-208	ENST00000541259		E9PCH4	1651 aa		13.78	□□□□□ -0.2
DDX55-208	ENST00000541259	FER1L4	A9Z1Z3	1794 aa		13.77	□□□□□ -0.21
DDX55-208	ENST00000541259	ZC3H13	Q5T200	1668 aa	Known RBP	13.77	□□□□□ -0.21
DDX55-208	ENST00000541259	CAMSAP1	Q5T5Y3	1602 aa		13.77	□□□□□ -0.21
DDX55-208	ENST00000541259	PKD2	Q13563	968 aa		13.76	□□□□□ -0.21
DDX55-208	ENST00000541259	LMTK2	Q8IWU2	1503 aa		13.75	□□□□□ -0.21
DDX55-208	ENST00000541259	ADAMTSL3	P82987	1691 aa		13.75	□□□□□ -0.21
DDX55-208	ENST00000541259	CCER1	Q8TC90	406 aa	Predicted RBP	13.74	□□□□□ -0.21
DDX55-208	ENST00000541259	MADD	Q8WXG6	1647 aa		13.74	□□□□□ -0.21
DDX55-208	ENST00000541259	EFCAB6	Q5THR3	1501 aa		13.74	□□□□□ -0.21
DDX55-208	ENST00000541259	RIMS1	Q86UR5	1692 aa	Known RBP	13.72	□□□□□ -0.21
DDX55-208	ENST00000541259	SPHKAP	Q2M3C7	1700 aa		13.71	□□□□□ -0.21
DDX55-208	ENST00000541259	MROH2A	A6NES4	1674 aa		13.71	□□□□□ -0.21
DDX55-208	ENST00000541259	ESF1	Q9H501	851 aa	Known RBP	13.7	□□□□□ -0.22
DDX55-208	ENST00000541259	NPAT	Q14207	1427 aa		13.7	□□□□□ -0.22
DDX55-208	ENST00000541259	C3	P01024	1663 aa		13.69	□□□□□ -0.22
DDX55-208	ENST00000541259	PREX1	Q8TCU6	1659 aa		13.69	□□□□□ -0.22
DDX55-208	ENST00000541259	ZMYM3	Q14202	1370 aa		13.69	□□□□□ -0.22
DDX55-208	ENST00000541259	ANKRD30B	Q9BXX2	1392 aa		13.69	□□□□□ -0.22
DDX55-208	ENST00000541259	PLA2R1	Q13018	1463 aa		13.68	□□□□□ -0.22
DDX55-208	ENST00000541259	ARHGAP31	Q2M1Z3	1444 aa		13.68	□□□□□ -0.22
DDX55-208	ENST00000541259	CEBPA	P49715	358 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX55-208	ENST00000541259	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX55-208	ENST00000541259	SIN3A	Q96ST3	1273 aa		13.68	□□□□□ -0.22
DDX55-208	ENST00000541259	CNTLN	Q9NXG0	1405 aa		13.67	□□□□□ -0.22
DDX55-208	ENST00000541259	RPRD2	Q5VT52	1461 aa	Known RBP	13.66	□□□□□ -0.22
DDX55-208	ENST00000541259	PTPRT	O14522	1441 aa		13.65	□□□□□ -0.22
DDX55-208	ENST00000541259	SYNM	O15061	1565 aa		13.65	□□□□□ -0.22
DDX55-208	ENST00000541259	UGGT1	Q9NYU2	1555 aa		13.64	□□□□□ -0.23
DDX55-208	ENST00000541259	KDM4F	A0A1W2PPD8	638 aa		13.64	□□□□□ -0.23
DDX55-208	ENST00000541259	CACNB1	Q02641	598 aa	Predicted RBP	13.64	□□□□□ -0.23
DDX55-208	ENST00000541259	CLTCL1	P53675	1640 aa		13.64	□□□□□ -0.23
DDX55-208	ENST00000541259	NOS1	P29475	1434 aa		13.64	□□□□□ -0.23
DDX55-208	ENST00000541259	ERVK-7	P63135	1459 aa		13.63	□□□□□ -0.23
DDX55-208	ENST00000541259	NEUROD1	Q13562	356 aa		13.63	□□□□□ -0.23
DDX55-208	ENST00000541259	TRPM2	O94759	1503 aa		13.63	□□□□□ -0.23
DDX55-208	ENST00000541259	SPATA31D1	Q6ZQQ2	1576 aa		13.62	□□□□□ -0.23
DDX55-208	ENST00000541259	KIF1B	O60333	1816 aa		13.62	□□□□□ -0.23
DDX55-208	ENST00000541259	MYO5B	Q9ULV0	1848 aa		13.62	□□□□□ -0.23
DDX55-208	ENST00000541259	CLSPN	Q9HAW4	1339 aa		13.62	□□□□□ -0.23
DDX55-208	ENST00000541259	PTPRM	P28827	1452 aa		13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms