RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 C9orf84Q5VXU9 1444 aa13.8□□□□□ -0.2
CDC42SE1-207ENST00000540998 GRIN2AQ12879 1464 aa13.8□□□□□ -0.2
CDC42SE1-207ENST00000540998 BRD4O60885 1362 aaPredicted RBP13.79□□□□□ -0.2
CDC42SE1-207ENST00000540998 NEFMP07197 916 aa13.79□□□□□ -0.2
CDC42SE1-207ENST00000540998 TSPY4P0CV99 314 aa13.79□□□□□ -0.2
CDC42SE1-207ENST00000540998 TSPY10P0CW01 314 aa13.79□□□□□ -0.2
CDC42SE1-207ENST00000540998 MRC2Q9UBG0 1479 aa13.78□□□□□ -0.2
CDC42SE1-207ENST00000540998 ADGBQ8N7X0 1667 aa13.78□□□□□ -0.2
CDC42SE1-207ENST00000540998 PLEKHD1A6NEE1 506 aa13.78□□□□□ -0.2
CDC42SE1-207ENST00000540998 RALBP1Q15311 655 aa13.77□□□□□ -0.2
CDC42SE1-207ENST00000540998 NLRP13Q86W25 1043 aa13.77□□□□□ -0.2
CDC42SE1-207ENST00000540998 DISP3Q9P2K9 1392 aa13.77□□□□□ -0.2
CDC42SE1-207ENST00000540998 JPH4Q96JJ6 628 aa13.77□□□□□ -0.21
CDC42SE1-207ENST00000540998 PANK3Q9H999 370 aa13.77□□□□□ -0.21
CDC42SE1-207ENST00000540998 UHRF1BP1Q6BDS2 1440 aa13.76□□□□□ -0.21
CDC42SE1-207ENST00000540998 KTN1Q86UP2 1357 aaKnown RBP13.76□□□□□ -0.21
CDC42SE1-207ENST00000540998 PER1O15534 1290 aaPredicted RBP13.76□□□□□ -0.21
CDC42SE1-207ENST00000540998 BACH2Q9BYV9 841 aa13.76□□□□□ -0.21
CDC42SE1-207ENST00000540998 ADGRL2O95490 1459 aa13.76□□□□□ -0.21
CDC42SE1-207ENST00000540998 MYT1LQ9UL68 1186 aa13.75□□□□□ -0.21
CDC42SE1-207ENST00000540998 CROCC2H7BZ55 1655 aa13.75□□□□□ -0.21
CDC42SE1-207ENST00000540998 ANO8Q9HCE9 1232 aaPredicted RBP13.75□□□□□ -0.21
CDC42SE1-207ENST00000540998 ARID4BQ4LE39 1312 aaPredicted RBP13.75□□□□□ -0.21
CDC42SE1-207ENST00000540998 CDC42BPAQ5VT25 1732 aa13.74□□□□□ -0.21
CDC42SE1-207ENST00000540998 CEP170Q5SW79 1584 aa13.74□□□□□ -0.21
CDC42SE1-207ENST00000540998 ITSN2Q9NZM3 1697 aa13.74□□□□□ -0.21
CDC42SE1-207ENST00000540998 PARD3Q8TEW0 1356 aa13.73□□□□□ -0.21
CDC42SE1-207ENST00000540998 EIF4G3O43432 1585 aaKnown RBP13.73□□□□□ -0.21
CDC42SE1-207ENST00000540998 TCERG1O14776 1098 aaKnown RBP13.73□□□□□ -0.21
CDC42SE1-207ENST00000540998 ADAMTS8Q9UP79 889 aa13.72□□□□□ -0.21
CDC42SE1-207ENST00000540998 TESK2Q96S53 571 aa13.71□□□□□ -0.22
CDC42SE1-207ENST00000540998 IFT140Q96RY7 1462 aa13.7□□□□□ -0.22
CDC42SE1-207ENST00000540998 ATP10BO94823 1461 aa13.7□□□□□ -0.22
CDC42SE1-207ENST00000540998 E9PCH4 1651 aa13.69□□□□□ -0.22
CDC42SE1-207ENST00000540998 PRAG1Q86YV5 1406 aa13.69□□□□□ -0.22
CDC42SE1-207ENST00000540998 CCDC146Q8IYE0 955 aa13.69□□□□□ -0.22
CDC42SE1-207ENST00000540998 CCDC144AA2RUR9 1427 aa13.69□□□□□ -0.22
CDC42SE1-207ENST00000540998 KDM5DQ9BY66 1539 aa13.69□□□□□ -0.22
CDC42SE1-207ENST00000540998 MAGI1Q96QZ7 1491 aaPredicted RBP13.68□□□□□ -0.22
CDC42SE1-207ENST00000540998 RGS3P49796 1198 aa13.68□□□□□ -0.22
CDC42SE1-207ENST00000540998 ABCC10Q5T3U5 1492 aa13.68□□□□□ -0.22
CDC42SE1-207ENST00000540998 ARHGEF12Q9NZN5 1544 aa13.67□□□□□ -0.22
CDC42SE1-207ENST00000540998 FAM135AQ9P2D6 1515 aa13.67□□□□□ -0.22
CDC42SE1-207ENST00000540998 PLA2R1Q13018 1463 aa13.67□□□□□ -0.22
CDC42SE1-207ENST00000540998 PLEKHH1Q9ULM0 1364 aa13.67□□□□□ -0.22
CDC42SE1-207ENST00000540998 A2MP01023 1474 aa13.66□□□□□ -0.22
CDC42SE1-207ENST00000540998 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.66□□□□□ -0.22
CDC42SE1-207ENST00000540998 BRPF3Q9ULD4 1205 aa13.65□□□□□ -0.22
CDC42SE1-207ENST00000540998 ADCY10Q96PN6 1610 aa13.65□□□□□ -0.22
CDC42SE1-207ENST00000540998 SPINK5Q9NQ38 1064 aaPredicted RBP13.64□□□□□ -0.23
CDC42SE1-207ENST00000540998 TRPM1Q7Z4N2 1603 aa13.64□□□□□ -0.23
CDC42SE1-207ENST00000540998 CARMIL2Q6F5E8 1435 aa13.64□□□□□ -0.23
CDC42SE1-207ENST00000540998 PDE3BQ13370 1112 aa13.64□□□□□ -0.23
CDC42SE1-207ENST00000540998 PTPRGP23470 1445 aa13.63□□□□□ -0.23
CDC42SE1-207ENST00000540998 ERBINQ96RT1 1412 aa13.63□□□□□ -0.23
CDC42SE1-207ENST00000540998 COL17A1Q9UMD9 1497 aaPredicted RBP13.62□□□□□ -0.23
CDC42SE1-207ENST00000540998 PLEKHH2Q8IVE3 1493 aa13.61□□□□□ -0.23
CDC42SE1-207ENST00000540998 MS4A1P11836 297 aa13.61□□□□□ -0.23
CDC42SE1-207ENST00000540998 ABCA8O94911 1581 aa13.61□□□□□ -0.23
CDC42SE1-207ENST00000540998 DMRT2Q9Y5R5 561 aa13.61□□□□□ -0.23
CDC42SE1-207ENST00000540998 PPP2R1AP30153 589 aa13.61□□□□□ -0.23
CDC42SE1-207ENST00000540998 TMF1P82094 1093 aa13.61□□□□□ -0.23
CDC42SE1-207ENST00000540998 DUSP27Q5VZP5 1158 aa13.61□□□□□ -0.23
CDC42SE1-207ENST00000540998 SAMD9LQ8IVG5 1584 aa13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 BLMP54132 1417 aaPredicted RBP13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 SYNJ2O15056 1496 aa13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 SHANK2Q9UPX8 1470 aa13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 SYCP2Q9BX26 1530 aa13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 BCAR3O75815 825 aa13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 WDR43Q15061 677 aaKnown RBP eCLIP13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 ERCC6Q03468 1493 aa13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 MAGI2Q86UL8 1455 aa13.6□□□□□ -0.23
CDC42SE1-207ENST00000540998 NFKBIBQ15653 356 aa13.59□□□□□ -0.23
CDC42SE1-207ENST00000540998 KDM2BQ8NHM5 1336 aa13.59□□□□□ -0.23
CDC42SE1-207ENST00000540998 KNSTRNQ9Y448 316 aa13.58□□□□□ -0.24
CDC42SE1-207ENST00000540998 CCDC141Q6ZP82 1450 aa13.58□□□□□ -0.24
CDC42SE1-207ENST00000540998 C8orf34Q49A92 452 aa13.57□□□□□ -0.24
CDC42SE1-207ENST00000540998 APAF1O14727 1248 aa13.57□□□□□ -0.24
CDC42SE1-207ENST00000540998 CDC42BPBQ9Y5S2 1711 aa13.56□□□□□ -0.24
CDC42SE1-207ENST00000540998 FRAT1Q92837 279 aaPredicted RBP13.56□□□□□ -0.24
CDC42SE1-207ENST00000540998 ZMYM4Q5VZL5 1548 aa13.55□□□□□ -0.24
CDC42SE1-207ENST00000540998 FRAT2O75474 233 aaPredicted RBP13.55□□□□□ -0.24
CDC42SE1-207ENST00000540998 AMER1Q5JTC6 1135 aaPredicted RBP13.55□□□□□ -0.24
CDC42SE1-207ENST00000540998 GPRASP1Q5JY77 1395 aa13.55□□□□□ -0.24
CDC42SE1-207ENST00000540998 TNNT2P45379 298 aaPredicted RBP13.55□□□□□ -0.24
CDC42SE1-207ENST00000540998 MYO5CQ9NQX4 1742 aa13.54□□□□□ -0.24
CDC42SE1-207ENST00000540998 NUP160Q12769 1436 aa13.54□□□□□ -0.24
CDC42SE1-207ENST00000540998 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
CDC42SE1-207ENST00000540998 NEUROD2Q15784 382 aa13.54□□□□□ -0.24
CDC42SE1-207ENST00000540998 PRDM15P57071 1507 aaPredicted RBP13.54□□□□□ -0.24
CDC42SE1-207ENST00000540998 ARHGAP5Q13017 1502 aa13.54□□□□□ -0.24
CDC42SE1-207ENST00000540998 PPM1GO15355 546 aaPredicted RBP13.54□□□□□ -0.24
CDC42SE1-207ENST00000540998 DAXXQ9UER7 740 aaPredicted RBP13.54□□□□□ -0.24
CDC42SE1-207ENST00000540998 IGHDP01880 384 aa13.53□□□□□ -0.24
CDC42SE1-207ENST00000540998 WDR7Q9Y4E6 1490 aa13.53□□□□□ -0.24
CDC42SE1-207ENST00000540998 SENP3Q9H4L4 574 aaPredicted RBP13.53□□□□□ -0.24
CDC42SE1-207ENST00000540998 SEC24BO95487 1268 aa13.52□□□□□ -0.24
CDC42SE1-207ENST00000540998 TTC37Q6PGP7 1564 aa13.52□□□□□ -0.25
CDC42SE1-207ENST00000540998 RRP7AQ9Y3A4 280 aaKnown RBP13.52□□□□□ -0.25
CDC42SE1-207ENST00000540998 CENPQQ7L2Z9 268 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms