RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 DEPDC5O75140 1603 aa19.31■□□□□ 0.68
RTN3-210ENST00000540798 BCORL1Q5H9F3 1711 aa19.3■□□□□ 0.68
RTN3-210ENST00000540798 ASXL2Q76L83 1435 aa19.29■□□□□ 0.68
RTN3-210ENST00000540798 FANCAO15360 1455 aa19.28■□□□□ 0.68
RTN3-210ENST00000540798 OSCARQ8IYS5 282 aa19.26■□□□□ 0.67
RTN3-210ENST00000540798 TRPM1Q7Z4N2 1603 aa19.26■□□□□ 0.67
RTN3-210ENST00000540798 USP47Q96K76 1375 aa19.25■□□□□ 0.67
RTN3-210ENST00000540798 CCDC144AA2RUR9 1427 aa19.25■□□□□ 0.67
RTN3-210ENST00000540798 ATP7AQ04656 1500 aa19.25■□□□□ 0.67
RTN3-210ENST00000540798 KIF7Q2M1P5 1343 aa19.24■□□□□ 0.67
RTN3-210ENST00000540798 EIF2AK4Q9P2K8 1649 aaKnown RBP19.23■□□□□ 0.67
RTN3-210ENST00000540798 E9PCH4 1651 aa19.23■□□□□ 0.67
RTN3-210ENST00000540798 VWDEQ8N2E2 1590 aa19.22■□□□□ 0.67
RTN3-210ENST00000540798 SPAG9O60271 1321 aaKnown RBP19.22■□□□□ 0.67
RTN3-210ENST00000540798 LAMC1P11047 1609 aa19.22■□□□□ 0.67
RTN3-210ENST00000540798 ADGRL1O94910 1474 aa19.2■□□□□ 0.66
RTN3-210ENST00000540798 ARID4BQ4LE39 1312 aaPredicted RBP19.2■□□□□ 0.66
RTN3-210ENST00000540798 PRAG1Q86YV5 1406 aa19.2■□□□□ 0.66
RTN3-210ENST00000540798 A2MP01023 1474 aa19.2■□□□□ 0.66
RTN3-210ENST00000540798 BCL11AQ9H165 835 aa19.19■□□□□ 0.66
RTN3-210ENST00000540798 TET3O43151 1660 aa19.19■□□□□ 0.66
RTN3-210ENST00000540798 AFAP1Q8N556 730 aa19.18■□□□□ 0.66
RTN3-210ENST00000540798 CFAP74Q9C0B2 1584 aa19.18■□□□□ 0.66
RTN3-210ENST00000540798 SPHKAPQ2M3C7 1700 aa19.17■□□□□ 0.66
RTN3-210ENST00000540798 KIDINS220Q9ULH0 1771 aa19.16■□□□□ 0.66
RTN3-210ENST00000540798 TRPM2O94759 1503 aa19.16■□□□□ 0.66
RTN3-210ENST00000540798 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.16■□□□□ 0.66
RTN3-210ENST00000540798 MROH1Q8NDA8 1641 aa19.16■□□□□ 0.66
RTN3-210ENST00000540798 PRDM15P57071 1507 aaPredicted RBP19.16■□□□□ 0.66
RTN3-210ENST00000540798 SCAPERQ9BY12 1400 aa19.16■□□□□ 0.66
RTN3-210ENST00000540798 DCAF11Q8TEB1 546 aa19.16■□□□□ 0.66
RTN3-210ENST00000540798 CEP152O94986 1710 aa19.16■□□□□ 0.66
RTN3-210ENST00000540798 ZNF326Q5BKZ1 582 aaKnown RBP19.15■□□□□ 0.66
RTN3-210ENST00000540798 GPRASP1Q5JY77 1395 aa19.15■□□□□ 0.66
RTN3-210ENST00000540798 PTPRTO14522 1441 aa19.14■□□□□ 0.65
RTN3-210ENST00000540798 RNF17Q9BXT8 1623 aaKnown RBP19.13■□□□□ 0.65
RTN3-210ENST00000540798 PRKRIP1Q9H875 184 aaPredicted RBP19.12■□□□□ 0.65
RTN3-210ENST00000540798 DHX29Q7Z478 1369 aaKnown RBP19.12■□□□□ 0.65
RTN3-210ENST00000540798 CARD11Q9BXL7 1154 aa19.12■□□□□ 0.65
RTN3-210ENST00000540798 NEURL4Q96JN8 1562 aa19.11■□□□□ 0.65
RTN3-210ENST00000540798 ZNF518AQ6AHZ1 1483 aa19.1■□□□□ 0.65
RTN3-210ENST00000540798 PRKCSHP14314 528 aaPredicted RBP19.1■□□□□ 0.65
RTN3-210ENST00000540798 KDM2AQ9Y2K7 1162 aa19.1■□□□□ 0.65
RTN3-210ENST00000540798 ROCK2O75116 1388 aaKnown RBP19.09■□□□□ 0.65
RTN3-210ENST00000540798 CLTCL1P53675 1640 aa19.09■□□□□ 0.65
RTN3-210ENST00000540798 MADDQ8WXG6 1647 aa19.07■□□□□ 0.64
RTN3-210ENST00000540798 NPM1P06748 294 aaKnown RBP eCLIP19.07■□□□□ 0.64
RTN3-210ENST00000540798 CD109Q6YHK3 1445 aa19.06■□□□□ 0.64
RTN3-210ENST00000540798 POGZQ7Z3K3 1410 aa19.06■□□□□ 0.64
RTN3-210ENST00000540798 LMTK2Q8IWU2 1503 aa19.06■□□□□ 0.64
RTN3-210ENST00000540798 MLH3Q9UHC1 1453 aa19.04■□□□□ 0.64
RTN3-210ENST00000540798 EFCAB6Q5THR3 1501 aa19.03■□□□□ 0.64
RTN3-210ENST00000540798 KANK1Q14678 1352 aa19.03■□□□□ 0.64
RTN3-210ENST00000540798 ST20-MTHFSA0A0A6YYL1 179 aa19.03■□□□□ 0.64
RTN3-210ENST00000540798 SUPT16HQ9Y5B9 1047 aaKnown RBP19.03■□□□□ 0.64
RTN3-210ENST00000540798 HECW2Q9P2P5 1572 aa19.03■□□□□ 0.64
RTN3-210ENST00000540798 FRMPD1Q5SYB0 1578 aa19.03■□□□□ 0.64
RTN3-210ENST00000540798 RGL3Q3MIN7 710 aa19.02■□□□□ 0.63
RTN3-210ENST00000540798 CCDC184Q52MB2 194 aa19.02■□□□□ 0.63
RTN3-210ENST00000540798 PPRC1Q5VV67 1664 aaKnown RBP19.01■□□□□ 0.63
RTN3-210ENST00000540798 NEO1Q92859 1461 aa19.01■□□□□ 0.63
RTN3-210ENST00000540798 IQGAP1P46940 1657 aa19.01■□□□□ 0.63
RTN3-210ENST00000540798 MAP3K4Q9Y6R4 1608 aa19■□□□□ 0.63
RTN3-210ENST00000540798 KIAA1210Q9ULL0 1709 aa18.99■□□□□ 0.63
RTN3-210ENST00000540798 NBPF1Q3BBV0 1214 aa18.99■□□□□ 0.63
RTN3-210ENST00000540798 COL17A1Q9UMD9 1497 aaPredicted RBP18.98■□□□□ 0.63
RTN3-210ENST00000540798 ABCA6Q8N139 1617 aa18.98■□□□□ 0.63
RTN3-210ENST00000540798 STAC3Q96MF2 364 aa18.98■□□□□ 0.63
RTN3-210ENST00000540798 IFT172Q9UG01 1749 aa18.98■□□□□ 0.63
RTN3-210ENST00000540798 KIF3BO15066 747 aa18.97■□□□□ 0.63
RTN3-210ENST00000540798 KIF1BO60333 1816 aa18.96■□□□□ 0.63
RTN3-210ENST00000540798 GLI2P10070 1586 aa18.96■□□□□ 0.62
RTN3-210ENST00000540798 RICTORQ6R327 1708 aa18.94■□□□□ 0.62
RTN3-210ENST00000540798 TESK2Q96S53 571 aa18.93■□□□□ 0.62
RTN3-210ENST00000540798 KTN1Q86UP2 1357 aaKnown RBP18.93■□□□□ 0.62
RTN3-210ENST00000540798 HNRNPUQ00839 825 aaKnown RBP eCLIP18.92■□□□□ 0.62
RTN3-210ENST00000540798 MRS2Q9HD23 443 aa18.92■□□□□ 0.62
RTN3-210ENST00000540798 MYOM2P54296 1465 aa18.92■□□□□ 0.62
RTN3-210ENST00000540798 MROH2AA6NES4 1674 aa18.92■□□□□ 0.62
RTN3-210ENST00000540798 UGGT1Q9NYU2 1555 aa18.9■□□□□ 0.62
RTN3-210ENST00000540798 DIP2CQ9Y2E4 1556 aa18.9■□□□□ 0.62
RTN3-210ENST00000540798 RIMBP3CA6NJZ7 1639 aa18.89■□□□□ 0.61
RTN3-210ENST00000540798 RIMBP3BA6NNM3 1639 aa18.89■□□□□ 0.61
RTN3-210ENST00000540798 RIMBP3Q9UFD9 1639 aa18.89■□□□□ 0.61
RTN3-210ENST00000540798 MYT1LQ9UL68 1186 aa18.89■□□□□ 0.61
RTN3-210ENST00000540798 DISP3Q9P2K9 1392 aa18.89■□□□□ 0.61
RTN3-210ENST00000540798 ADGRB3O60242 1522 aa18.88■□□□□ 0.61
RTN3-210ENST00000540798 CYB5RLQ6IPT4 315 aa18.88■□□□□ 0.61
RTN3-210ENST00000540798 POLR3GLQ9BT43 218 aa18.88■□□□□ 0.61
RTN3-210ENST00000540798 NRXN1Q9ULB1 1477 aa18.88■□□□□ 0.61
RTN3-210ENST00000540798 ABCC3O15438 1527 aa18.87■□□□□ 0.61
RTN3-210ENST00000540798 CAMSAP1Q5T5Y3 1602 aa18.86■□□□□ 0.61
RTN3-210ENST00000540798 SCAF11Q99590 1463 aaKnown RBP18.86■□□□□ 0.61
RTN3-210ENST00000540798 ZBED9Q6R2W3 1325 aa18.85■□□□□ 0.61
RTN3-210ENST00000540798 NPATQ14207 1427 aa18.84■□□□□ 0.61
RTN3-210ENST00000540798 ZC3H13Q5T200 1668 aaKnown RBP18.84■□□□□ 0.61
RTN3-210ENST00000540798 FAM9BQ8IZU0 186 aa18.83■□□□□ 0.6
RTN3-210ENST00000540798 PPLO60437 1756 aa18.83■□□□□ 0.6
RTN3-210ENST00000540798 PARD3Q8TEW0 1356 aa18.83■□□□□ 0.6
RTN3-210ENST00000540798 PER1O15534 1290 aaPredicted RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms