RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 TXNDC2Q86VQ3 553 aa18.21■□□□□ 0.51
COLCA1-204ENST00000540738 TROQ12816 1431 aaPredicted RBP18.21■□□□□ 0.5
COLCA1-204ENST00000540738 CGNL1Q0VF96 1302 aa18.2■□□□□ 0.5
COLCA1-204ENST00000540738 CCER2I3L3R5 266 aa18.2■□□□□ 0.5
COLCA1-204ENST00000540738 BECN1Q14457 450 aa18.2■□□□□ 0.5
COLCA1-204ENST00000540738 LRRC9Q6ZRR7 1453 aa18.19■□□□□ 0.5
COLCA1-204ENST00000540738 C1orf141Q5JVX7 400 aa18.18■□□□□ 0.5
COLCA1-204ENST00000540738 CDK11BP21127 795 aaKnown RBP18.18■□□□□ 0.5
COLCA1-204ENST00000540738 PROSER2Q86WR7 435 aaPredicted RBP18.17■□□□□ 0.5
COLCA1-204ENST00000540738 SCAPERQ9BY12 1400 aa18.17■□□□□ 0.5
COLCA1-204ENST00000540738 KCNJ4P48050 445 aa18.16■□□□□ 0.5
COLCA1-204ENST00000540738 NCLP19338 710 aaKnown RBP18.16■□□□□ 0.5
COLCA1-204ENST00000540738 GTF2E1P29083 439 aaPredicted RBP18.16■□□□□ 0.5
COLCA1-204ENST00000540738 FGD1P98174 961 aa18.15■□□□□ 0.5
COLCA1-204ENST00000540738 ST20-MTHFSA0A0A6YYL1 179 aa18.15■□□□□ 0.5
COLCA1-204ENST00000540738 HECW1Q76N89 1606 aa18.15■□□□□ 0.5
COLCA1-204ENST00000540738 ANKLE2Q86XL3 938 aa18.14■□□□□ 0.49
COLCA1-204ENST00000540738 SLC52A1Q9NWF4 448 aa18.14■□□□□ 0.49
COLCA1-204ENST00000540738 PHLDB1Q86UU1 1377 aa18.14■□□□□ 0.49
COLCA1-204ENST00000540738 NLRP13Q86W25 1043 aa18.14■□□□□ 0.49
COLCA1-204ENST00000540738 CENPJQ9HC77 1338 aaPredicted RBP18.13■□□□□ 0.49
COLCA1-204ENST00000540738 PRXQ9BXM0 1461 aa18.13■□□□□ 0.49
COLCA1-204ENST00000540738 RAPGEF3O95398 923 aa18.13■□□□□ 0.49
COLCA1-204ENST00000540738 CFAP44Q96MT7 982 aa18.13■□□□□ 0.49
COLCA1-204ENST00000540738 TAF7LQ5H9L4 462 aa18.12■□□□□ 0.49
COLCA1-204ENST00000540738 EHBP1L1Q8N3D4 1523 aa18.12■□□□□ 0.49
COLCA1-204ENST00000540738 G3V3G9 751 aa18.12■□□□□ 0.49
COLCA1-204ENST00000540738 DCAF8Q5TAQ9 597 aa18.12■□□□□ 0.49
COLCA1-204ENST00000540738 GRIN2AQ12879 1464 aa18.11■□□□□ 0.49
COLCA1-204ENST00000540738 CD109Q6YHK3 1445 aa18.11■□□□□ 0.49
COLCA1-204ENST00000540738 RRBP1Q9P2E9 1410 aaKnown RBP18.11■□□□□ 0.49
COLCA1-204ENST00000540738 GPRASP1Q5JY77 1395 aa18.1■□□□□ 0.49
COLCA1-204ENST00000540738 IQGAP2Q13576 1575 aa18.1■□□□□ 0.49
COLCA1-204ENST00000540738 DDRGK1Q96HY6 314 aa18.1■□□□□ 0.49
COLCA1-204ENST00000540738 MIA2Q96PC5 1412 aa18.1■□□□□ 0.49
COLCA1-204ENST00000540738 TEFQ10587 303 aa18.09■□□□□ 0.49
COLCA1-204ENST00000540738 SUPT16HQ9Y5B9 1047 aaKnown RBP18.08■□□□□ 0.48
COLCA1-204ENST00000540738 C9orf84Q5VXU9 1444 aa18.07■□□□□ 0.48
COLCA1-204ENST00000540738 GOLGA6L22H0YM25 854 aa18.07■□□□□ 0.48
COLCA1-204ENST00000540738 TTC5Q8N0Z6 440 aa18.07■□□□□ 0.48
COLCA1-204ENST00000540738 PANK3Q9H999 370 aa18.07■□□□□ 0.48
COLCA1-204ENST00000540738 ZRSR1Q15695 479 aaKnown RBP18.06■□□□□ 0.48
COLCA1-204ENST00000540738 MSH5O43196 834 aa18.06■□□□□ 0.48
COLCA1-204ENST00000540738 CUL7Q14999 1698 aa18.06■□□□□ 0.48
COLCA1-204ENST00000540738 GORABQ5T7V8 394 aa18.06■□□□□ 0.48
COLCA1-204ENST00000540738 PEG3Q9GZU2 1588 aa18.05■□□□□ 0.48
COLCA1-204ENST00000540738 USP47Q96K76 1375 aa18.05■□□□□ 0.48
COLCA1-204ENST00000540738 PHF23Q9BUL5 403 aaPredicted RBP18.05■□□□□ 0.48
COLCA1-204ENST00000540738 CHMP3Q9Y3E7 222 aa18.05■□□□□ 0.48
COLCA1-204ENST00000540738 RAPGEF4Q8WZA2 1011 aa18.03■□□□□ 0.48
COLCA1-204ENST00000540738 HFM1A2PYH4 1435 aa18.03■□□□□ 0.48
COLCA1-204ENST00000540738 URB2Q14146 1524 aaKnown RBP18.03■□□□□ 0.48
COLCA1-204ENST00000540738 MCCP23508 829 aa18.03■□□□□ 0.48
COLCA1-204ENST00000540738 ISY1Q9ULR0 285 aaKnown RBP18.02■□□□□ 0.48
COLCA1-204ENST00000540738 ARAP1Q96P48 1450 aa18.02■□□□□ 0.47
COLCA1-204ENST00000540738 HMMRO75330 724 aa18.02■□□□□ 0.47
COLCA1-204ENST00000540738 RGS3P49796 1198 aa18.01■□□□□ 0.47
COLCA1-204ENST00000540738 ESCO1Q5FWF5 840 aa18■□□□□ 0.47
COLCA1-204ENST00000540738 PPP4R2Q9NY27 417 aa18■□□□□ 0.47
COLCA1-204ENST00000540738 NAP1L2Q9ULW6 460 aaPredicted RBP18■□□□□ 0.47
COLCA1-204ENST00000540738 SMC4Q9NTJ3 1288 aa18■□□□□ 0.47
COLCA1-204ENST00000540738 GPATCH3Q96I76 525 aa17.99■□□□□ 0.47
COLCA1-204ENST00000540738 ITPRIPQ8IWB1 547 aa17.99■□□□□ 0.47
COLCA1-204ENST00000540738 SYTL4Q96C24 671 aaPredicted RBP17.99■□□□□ 0.47
COLCA1-204ENST00000540738 MYBBP1AQ9BQG0 1328 aaKnown RBP17.98■□□□□ 0.47
COLCA1-204ENST00000540738 DIAPH1O60610 1272 aaKnown RBP17.98■□□□□ 0.47
COLCA1-204ENST00000540738 RPGRIP1LQ68CZ1 1315 aa17.98■□□□□ 0.47
COLCA1-204ENST00000540738 NLRP6P59044 892 aa17.98■□□□□ 0.47
COLCA1-204ENST00000540738 NLRP2Q9NX02 1062 aa17.97■□□□□ 0.47
COLCA1-204ENST00000540738 DCAF8L1A6NGE4 600 aa17.97■□□□□ 0.47
COLCA1-204ENST00000540738 DMRT2Q9Y5R5 561 aa17.96■□□□□ 0.47
COLCA1-204ENST00000540738 KIAA1211Q6ZU35 1233 aa17.96■□□□□ 0.47
COLCA1-204ENST00000540738 PLB1Q6P1J6 1458 aa17.96■□□□□ 0.46
COLCA1-204ENST00000540738 PDE3BQ13370 1112 aa17.95■□□□□ 0.46
COLCA1-204ENST00000540738 TMEM132EQ6IEE7 984 aa17.95■□□□□ 0.46
COLCA1-204ENST00000540738 ANP32EQ9BTT0 268 aa17.95■□□□□ 0.46
COLCA1-204ENST00000540738 EPRSP07814 1512 aaKnown RBP17.95■□□□□ 0.46
COLCA1-204ENST00000540738 SLC4A10Q6U841 1118 aa17.95■□□□□ 0.46
COLCA1-204ENST00000540738 RWDD1Q9H446 243 aaPredicted RBP17.94■□□□□ 0.46
COLCA1-204ENST00000540738 ZNF608Q9ULD9 1512 aaPredicted RBP17.94■□□□□ 0.46
COLCA1-204ENST00000540738 FRAT2O75474 233 aaPredicted RBP17.94■□□□□ 0.46
COLCA1-204ENST00000540738 CCDC146Q8IYE0 955 aa17.94■□□□□ 0.46
COLCA1-204ENST00000540738 NEXNQ0ZGT2 675 aa17.94■□□□□ 0.46
COLCA1-204ENST00000540738 AKNAQ7Z591 1439 aa17.93■□□□□ 0.46
COLCA1-204ENST00000540738 ADGRL1O94910 1474 aa17.93■□□□□ 0.46
COLCA1-204ENST00000540738 SF3B2Q13435 895 aaKnown RBP17.93■□□□□ 0.46
COLCA1-204ENST00000540738 PPP6R1Q9UPN7 881 aa17.93■□□□□ 0.46
COLCA1-204ENST00000540738 ABTB2Q8N961 1025 aa17.92■□□□□ 0.46
COLCA1-204ENST00000540738 APBB1O00213 710 aa17.92■□□□□ 0.46
COLCA1-204ENST00000540738 RCAN3Q9UKA8 241 aa17.92■□□□□ 0.46
COLCA1-204ENST00000540738 DENND4BO75064 1496 aaPredicted RBP17.91■□□□□ 0.46
COLCA1-204ENST00000540738 CFAP70Q5T0N1 1121 aa17.9■□□□□ 0.46
COLCA1-204ENST00000540738 NGEFQ8N5V2 710 aa17.9■□□□□ 0.46
COLCA1-204ENST00000540738 WASHC2AQ641Q2 1341 aa17.9■□□□□ 0.46
COLCA1-204ENST00000540738 CCDC141Q6ZP82 1450 aa17.9■□□□□ 0.46
COLCA1-204ENST00000540738 CABP2Q9NPB3 220 aa17.89■□□□□ 0.46
COLCA1-204ENST00000540738 TAOK2Q9UL54 1235 aa17.89■□□□□ 0.45
COLCA1-204ENST00000540738 TEX14Q8IWB6 1497 aa17.89■□□□□ 0.45
COLCA1-204ENST00000540738 UNC13AQ9UPW8 1703 aa17.89■□□□□ 0.45
COLCA1-204ENST00000540738 PRAM1Q96QH2 718 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms