RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CDK13Q14004 1512 aaKnown RBP12.38□□□□□ -0.43
CLIP1-214ENST00000540539 TIAM1Q13009 1591 aa12.38□□□□□ -0.43
CLIP1-214ENST00000540539 CCDC18Q5T9S5 1454 aa12.38□□□□□ -0.43
CLIP1-214ENST00000540539 MAP3K1Q13233 1512 aa12.37□□□□□ -0.43
CLIP1-214ENST00000540539 ADCY10Q96PN6 1610 aa12.37□□□□□ -0.43
CLIP1-214ENST00000540539 BRD2P25440 801 aaKnown RBP12.37□□□□□ -0.43
CLIP1-214ENST00000540539 CFAP43Q8NDM7 1665 aa12.37□□□□□ -0.43
CLIP1-214ENST00000540539 RNF123Q5XPI4 1314 aa12.36□□□□□ -0.43
CLIP1-214ENST00000540539 ATP10BO94823 1461 aa12.36□□□□□ -0.43
CLIP1-214ENST00000540539 ZFP91Q96JP5 570 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-214ENST00000540539 DNAJC5Q9H3Z4 198 aa12.35□□□□□ -0.43
CLIP1-214ENST00000540539 TMEM51Q9NW97 253 aa12.35□□□□□ -0.43
CLIP1-214ENST00000540539 MS4A1P11836 297 aa12.35□□□□□ -0.43
CLIP1-214ENST00000540539 KANK4Q5T7N3 995 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-214ENST00000540539 PLCD3Q8N3E9 789 aa12.35□□□□□ -0.43
CLIP1-214ENST00000540539 ZNF830Q96NB3 372 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-214ENST00000540539 KDM5BQ9UGL1 1544 aa12.33□□□□□ -0.44
CLIP1-214ENST00000540539 XRCC6P12956 609 aaKnown RBP eCLIP12.33□□□□□ -0.44
CLIP1-214ENST00000540539 ZCCHC11Q5TAX3 1644 aaKnown RBP12.33□□□□□ -0.44
CLIP1-214ENST00000540539 FTSJ3Q8IY81 847 aaKnown RBP12.32□□□□□ -0.44
CLIP1-214ENST00000540539 LRRC9Q6ZRR7 1453 aa12.32□□□□□ -0.44
CLIP1-214ENST00000540539 CCDC184Q52MB2 194 aa12.32□□□□□ -0.44
CLIP1-214ENST00000540539 CHMP4AQ9BY43 222 aa12.32□□□□□ -0.44
CLIP1-214ENST00000540539 VGLL3A8MV65 326 aa12.31□□□□□ -0.44
CLIP1-214ENST00000540539 NCLP19338 710 aaKnown RBP12.31□□□□□ -0.44
CLIP1-214ENST00000540539 PANK2Q9BZ23 570 aa12.31□□□□□ -0.44
CLIP1-214ENST00000540539 MTUS2Q5JR59 1369 aa12.31□□□□□ -0.44
CLIP1-214ENST00000540539 MAGI3Q5TCQ9 1506 aa12.31□□□□□ -0.44
CLIP1-214ENST00000540539 SMG6Q86US8 1419 aaKnown RBP12.31□□□□□ -0.44
CLIP1-214ENST00000540539 ERBB4Q15303 1308 aa12.31□□□□□ -0.44
CLIP1-214ENST00000540539 ESPNB1AK53 854 aa12.29□□□□□ -0.44
CLIP1-214ENST00000540539 NPM1P06748 294 aaKnown RBP eCLIP12.29□□□□□ -0.44
CLIP1-214ENST00000540539 UTP14CQ5TAP6 766 aaKnown RBP12.29□□□□□ -0.44
CLIP1-214ENST00000540539 PRDM10Q9NQV6 1147 aa12.29□□□□□ -0.44
CLIP1-214ENST00000540539 PLEKHD1A6NEE1 506 aa12.29□□□□□ -0.44
CLIP1-214ENST00000540539 PPP4R3BQ5MIZ7 849 aa12.28□□□□□ -0.44
CLIP1-214ENST00000540539 EHBP1L1Q8N3D4 1523 aa12.28□□□□□ -0.44
CLIP1-214ENST00000540539 RIPK4P57078 832 aa12.28□□□□□ -0.44
CLIP1-214ENST00000540539 DMTNQ08495 405 aa12.28□□□□□ -0.44
CLIP1-214ENST00000540539 MAP7D2Q96T17 732 aa12.28□□□□□ -0.44
CLIP1-214ENST00000540539 KIAA1211Q6ZU35 1233 aa12.27□□□□□ -0.44
CLIP1-214ENST00000540539 FAM9BQ8IZU0 186 aa12.27□□□□□ -0.44
CLIP1-214ENST00000540539 TROQ12816 1431 aaPredicted RBP12.27□□□□□ -0.44
CLIP1-214ENST00000540539 TEX2Q8IWB9 1127 aa12.27□□□□□ -0.45
CLIP1-214ENST00000540539 SECISBP2LQ93073 1101 aaKnown RBP12.26□□□□□ -0.45
CLIP1-214ENST00000540539 FSD2A1L4K1 749 aa12.25□□□□□ -0.45
CLIP1-214ENST00000540539 CHRM1P11229 460 aaPredicted RBP12.25□□□□□ -0.45
CLIP1-214ENST00000540539 SUPT6HQ7KZ85 1726 aaKnown RBP12.25□□□□□ -0.45
CLIP1-214ENST00000540539 GOLGA6L3A6NEY3 463 aa12.25□□□□□ -0.45
CLIP1-214ENST00000540539 ASXL2Q76L83 1435 aa12.24□□□□□ -0.45
CLIP1-214ENST00000540539 NUDCQ9Y266 331 aa12.24□□□□□ -0.45
CLIP1-214ENST00000540539 FAM13BQ9NYF5 915 aa12.23□□□□□ -0.45
CLIP1-214ENST00000540539 KIF14Q15058 1648 aa12.23□□□□□ -0.45
CLIP1-214ENST00000540539 NCOA2Q15596 1464 aa12.23□□□□□ -0.45
CLIP1-214ENST00000540539 WDR7Q9Y4E6 1490 aa12.23□□□□□ -0.45
CLIP1-214ENST00000540539 ANP32BQ92688 251 aaKnown RBP12.22□□□□□ -0.45
CLIP1-214ENST00000540539 ZSCAN20P17040 1043 aaPredicted RBP12.22□□□□□ -0.45
CLIP1-214ENST00000540539 RAB3GAP2Q9H2M9 1393 aa12.21□□□□□ -0.45
CLIP1-214ENST00000540539 RRBP1Q9P2E9 1410 aaKnown RBP12.2□□□□□ -0.46
CLIP1-214ENST00000540539 SAMD1Q6SPF0 538 aaPredicted RBP12.2□□□□□ -0.46
CLIP1-214ENST00000540539 ARID3AQ99856 593 aa12.2□□□□□ -0.46
CLIP1-214ENST00000540539 PHLDB1Q86UU1 1377 aa12.2□□□□□ -0.46
CLIP1-214ENST00000540539 MRS2Q9HD23 443 aa12.19□□□□□ -0.46
CLIP1-214ENST00000540539 SKAP1Q86WV1 359 aa12.19□□□□□ -0.46
CLIP1-214ENST00000540539 EXOC6Q8TAG9 804 aa12.18□□□□□ -0.46
CLIP1-214ENST00000540539 ABCC10Q5T3U5 1492 aa12.17□□□□□ -0.46
CLIP1-214ENST00000540539 CCNB3Q8WWL7 1395 aa12.17□□□□□ -0.46
CLIP1-214ENST00000540539 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLIP1-214ENST00000540539 TTC37Q6PGP7 1564 aa12.16□□□□□ -0.46
CLIP1-214ENST00000540539 MYOM3Q5VTT5 1437 aa12.16□□□□□ -0.46
CLIP1-214ENST00000540539 KIF20AO95235 890 aa12.16□□□□□ -0.46
CLIP1-214ENST00000540539 MYH16Q9H6N6 1097 aa12.16□□□□□ -0.46
CLIP1-214ENST00000540539 TERF1P54274 439 aa12.16□□□□□ -0.46
CLIP1-214ENST00000540539 TNNT2P45379 298 aaPredicted RBP12.15□□□□□ -0.46
CLIP1-214ENST00000540539 CDC42BPAQ5VT25 1732 aa12.15□□□□□ -0.46
CLIP1-214ENST00000540539 MRE11P49959 708 aa12.15□□□□□ -0.47
CLIP1-214ENST00000540539 GPATCH8Q9UKJ3 1502 aaKnown RBP12.14□□□□□ -0.47
CLIP1-214ENST00000540539 OFD1O75665 1012 aa12.14□□□□□ -0.47
CLIP1-214ENST00000540539 RGS22Q8NE09 1264 aa12.14□□□□□ -0.47
CLIP1-214ENST00000540539 MTERF4Q7Z6M4 381 aaKnown RBP12.14□□□□□ -0.47
CLIP1-214ENST00000540539 RNF216Q9NWF9 866 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-214ENST00000540539 ABCA9Q8IUA7 1624 aa12.13□□□□□ -0.47
CLIP1-214ENST00000540539 ITSN2Q9NZM3 1697 aa12.13□□□□□ -0.47
CLIP1-214ENST00000540539 FGD6Q6ZV73 1430 aa12.13□□□□□ -0.47
CLIP1-214ENST00000540539 TRIM44Q96DX7 344 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-214ENST00000540539 PRKRIP1Q9H875 184 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-214ENST00000540539 MYO5CQ9NQX4 1742 aa12.12□□□□□ -0.47
CLIP1-214ENST00000540539 GZF1Q9H116 711 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-214ENST00000540539 CFDP1Q9UEE9 299 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-214ENST00000540539 CDC42BPBQ9Y5S2 1711 aa12.11□□□□□ -0.47
CLIP1-214ENST00000540539 PREX2Q70Z35 1606 aa12.11□□□□□ -0.47
CLIP1-214ENST00000540539 DIP2BQ9P265 1576 aa12.11□□□□□ -0.47
CLIP1-214ENST00000540539 MIA2Q96PC5 1412 aa12.11□□□□□ -0.47
CLIP1-214ENST00000540539 HAP1P54257 671 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-214ENST00000540539 RRP1P56182 461 aaKnown RBP12.11□□□□□ -0.47
CLIP1-214ENST00000540539 GTPBP4Q9BZE4 634 aaKnown RBP12.11□□□□□ -0.47
CLIP1-214ENST00000540539 VGFO15240 615 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-214ENST00000540539 LETM1O95202 739 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-214ENST00000540539 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-214ENST00000540539 CNTLNQ9NXG0 1405 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms