RNA–Protein interactions for RNA: ENST00000539815.5

GNE-205, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GNE, Length 3,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-205ENST00000539815 RXRBP28702 533 aa11.38□□□□□ -0.59
GNE-205ENST00000539815 RBM33Q96EV2 1170 aaKnown RBP11.38□□□□□ -0.59
GNE-205ENST00000539815 NPATQ14207 1427 aa11.38□□□□□ -0.59
GNE-205ENST00000539815 CADPS2Q86UW7 1296 aa11.37□□□□□ -0.59
GNE-205ENST00000539815 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.37□□□□□ -0.59
GNE-205ENST00000539815 NCOA1Q15788 1441 aa11.37□□□□□ -0.59
GNE-205ENST00000539815 ADAMTSL3P82987 1691 aa11.36□□□□□ -0.59
GNE-205ENST00000539815 NPHP4O75161 1426 aaPredicted RBP11.35□□□□□ -0.59
GNE-205ENST00000539815 MLH3Q9UHC1 1453 aa11.35□□□□□ -0.59
GNE-205ENST00000539815 ZRANB1Q9UGI0 708 aa11.35□□□□□ -0.59
GNE-205ENST00000539815 DHX29Q7Z478 1369 aaKnown RBP11.35□□□□□ -0.59
GNE-205ENST00000539815 CAMSAP1Q5T5Y3 1602 aa11.34□□□□□ -0.59
GNE-205ENST00000539815 HRCP23327 699 aa11.34□□□□□ -0.59
GNE-205ENST00000539815 FER1L4A9Z1Z3 1794 aa11.34□□□□□ -0.59
GNE-205ENST00000539815 MIA2Q96PC5 1412 aa11.33□□□□□ -0.6
GNE-205ENST00000539815 ADAMTS2O95450 1211 aa11.33□□□□□ -0.6
GNE-205ENST00000539815 C8orf37Q96NL8 207 aa11.32□□□□□ -0.6
GNE-205ENST00000539815 CASKIN1Q8WXD9 1431 aa11.32□□□□□ -0.6
GNE-205ENST00000539815 SLAIN2Q9P270 581 aa11.32□□□□□ -0.6
GNE-205ENST00000539815 KCNA6P17658 529 aa11.31□□□□□ -0.6
GNE-205ENST00000539815 SLC52A1Q9NWF4 448 aa11.3□□□□□ -0.6
GNE-205ENST00000539815 SHANK2Q9UPX8 1470 aa11.3□□□□□ -0.6
GNE-205ENST00000539815 IQSEC2Q5JU85 1478 aa11.29□□□□□ -0.6
GNE-205ENST00000539815 ARHGAP35Q9NRY4 1499 aa11.29□□□□□ -0.6
GNE-205ENST00000539815 A2ML1A8K2U0 1454 aa11.28□□□□□ -0.6
GNE-205ENST00000539815 TTC37Q6PGP7 1564 aa11.28□□□□□ -0.6
GNE-205ENST00000539815 ZMYM4Q5VZL5 1548 aa11.28□□□□□ -0.6
GNE-205ENST00000539815 ARHGEF12Q9NZN5 1544 aa11.28□□□□□ -0.6
GNE-205ENST00000539815 KIAA1107Q9UPP5 1409 aa11.27□□□□□ -0.61
GNE-205ENST00000539815 AGLP35573 1532 aa11.26□□□□□ -0.61
GNE-205ENST00000539815 TMEM94Q12767 1356 aa11.26□□□□□ -0.61
GNE-205ENST00000539815 ANKRD30AQ9BXX3 1397 aa11.26□□□□□ -0.61
GNE-205ENST00000539815 PPARGC1BQ86YN6 1023 aaKnown RBP11.26□□□□□ -0.61
GNE-205ENST00000539815 LRRC59Q96AG4 307 aaKnown RBP11.26□□□□□ -0.61
GNE-205ENST00000539815 PREX1Q8TCU6 1659 aa11.26□□□□□ -0.61
GNE-205ENST00000539815 JCADQ9P266 1359 aa11.25□□□□□ -0.61
GNE-205ENST00000539815 C19orf44Q9H6X5 657 aa11.25□□□□□ -0.61
GNE-205ENST00000539815 MYO5CQ9NQX4 1742 aa11.25□□□□□ -0.61
GNE-205ENST00000539815 QTRT2Q9H974 415 aaKnown RBP11.24□□□□□ -0.61
GNE-205ENST00000539815 SYCP2Q9BX26 1530 aa11.24□□□□□ -0.61
GNE-205ENST00000539815 PLA2R1Q13018 1463 aa11.24□□□□□ -0.61
GNE-205ENST00000539815 CPS1P31327 1500 aa11.24□□□□□ -0.61
GNE-205ENST00000539815 SAMD9Q5K651 1589 aa11.23□□□□□ -0.61
GNE-205ENST00000539815 IDI1Q13907 227 aa11.23□□□□□ -0.61
GNE-205ENST00000539815 CCDC141Q6ZP82 1450 aa11.23□□□□□ -0.61
GNE-205ENST00000539815 LOC105371045A0A1W2PR82 267 aa11.22□□□□□ -0.61
GNE-205ENST00000539815 NLRP1Q9C000 1473 aa11.22□□□□□ -0.61
GNE-205ENST00000539815 KIF15Q9NS87 1388 aa11.22□□□□□ -0.61
GNE-205ENST00000539815 ATP7AQ04656 1500 aa11.22□□□□□ -0.61
GNE-205ENST00000539815 UGGT1Q9NYU2 1555 aa11.21□□□□□ -0.61
GNE-205ENST00000539815 POTEAQ6S8J7 498 aa11.21□□□□□ -0.61
GNE-205ENST00000539815 GPATCH8Q9UKJ3 1502 aaKnown RBP11.21□□□□□ -0.61
GNE-205ENST00000539815 FYCO1Q9BQS8 1478 aa11.21□□□□□ -0.61
GNE-205ENST00000539815 RBM6P78332 1123 aaKnown RBP11.2□□□□□ -0.62
GNE-205ENST00000539815 PPP1R1BQ9UD71 204 aaPredicted RBP11.2□□□□□ -0.62
GNE-205ENST00000539815 SPATA31A6Q5VVP1 1343 aa11.19□□□□□ -0.62
GNE-205ENST00000539815 LTKP29376 864 aa11.19□□□□□ -0.62
GNE-205ENST00000539815 RTEL1-TNFRSF6BF6WH68 1400 aa11.19□□□□□ -0.62
GNE-205ENST00000539815 NUTM2FA1L443 756 aa11.18□□□□□ -0.62
GNE-205ENST00000539815 AMOTL2Q9Y2J4 779 aa11.18□□□□□ -0.62
GNE-205ENST00000539815 USP21Q9UK80 565 aa11.17□□□□□ -0.62
GNE-205ENST00000539815 DIP2CQ9Y2E4 1556 aa11.17□□□□□ -0.62
GNE-205ENST00000539815 TRPC5Q9UL62 973 aaPredicted RBP11.17□□□□□ -0.62
GNE-205ENST00000539815 AFF2P51816 1311 aa11.17□□□□□ -0.62
GNE-205ENST00000539815 MYOM3Q5VTT5 1437 aa11.17□□□□□ -0.62
GNE-205ENST00000539815 CEP170BQ9Y4F5 1589 aaPredicted RBP11.17□□□□□ -0.62
GNE-205ENST00000539815 RICTORQ6R327 1708 aa11.17□□□□□ -0.62
GNE-205ENST00000539815 FRMPD1Q5SYB0 1578 aa11.16□□□□□ -0.62
GNE-205ENST00000539815 SCAF11Q99590 1463 aaKnown RBP11.16□□□□□ -0.62
GNE-205ENST00000539815 ESCO1Q5FWF5 840 aa11.15□□□□□ -0.62
GNE-205ENST00000539815 SUPT6HQ7KZ85 1726 aaKnown RBP11.15□□□□□ -0.62
GNE-205ENST00000539815 ABCC1P33527 1531 aa11.15□□□□□ -0.62
GNE-205ENST00000539815 STK26Q9P289 416 aa11.15□□□□□ -0.62
GNE-205ENST00000539815 TBX22Q9Y458 520 aa11.14□□□□□ -0.63
GNE-205ENST00000539815 CEP162Q5TB80 1403 aa11.14□□□□□ -0.63
GNE-205ENST00000539815 ZBTB7CA1YPR0 619 aa11.14□□□□□ -0.63
GNE-205ENST00000539815 BAG6P46379 1132 aa11.14□□□□□ -0.63
GNE-205ENST00000539815 POGKQ9P215 609 aa11.14□□□□□ -0.63
GNE-205ENST00000539815 TMEM2Q9UHN6 1383 aa11.13□□□□□ -0.63
GNE-205ENST00000539815 VGFO15240 615 aaPredicted RBP11.13□□□□□ -0.63
GNE-205ENST00000539815 PZPP20742 1482 aa11.12□□□□□ -0.63
GNE-205ENST00000539815 SAMD9LQ8IVG5 1584 aa11.12□□□□□ -0.63
GNE-205ENST00000539815 UPF1Q92900 1129 aaKnown RBP eCLIP11.12□□□□□ -0.635e-13■■■■■ 43.7
GNE-205ENST00000539815 RGL3Q3MIN7 710 aa11.11□□□□□ -0.63
GNE-205ENST00000539815 NUP155O75694 1391 aa11.11□□□□□ -0.63
GNE-205ENST00000539815 NCOA2Q15596 1464 aa11.11□□□□□ -0.63
GNE-205ENST00000539815 PAK3O75914 559 aaPredicted RBP11.1□□□□□ -0.63
GNE-205ENST00000539815 FAM135BQ49AJ0 1406 aa11.1□□□□□ -0.63
GNE-205ENST00000539815 PSME1Q06323 249 aa11.1□□□□□ -0.63
GNE-205ENST00000539815 MED1Q15648 1581 aaPredicted RBP11.09□□□□□ -0.63
GNE-205ENST00000539815 ATAD2Q6PL18 1390 aa11.09□□□□□ -0.63
GNE-205ENST00000539815 EHBP1L1Q8N3D4 1523 aa11.09□□□□□ -0.63
GNE-205ENST00000539815 TCOF1Q13428 1488 aaKnown RBP11.08□□□□□ -0.64
GNE-205ENST00000539815 KDM5DQ9BY66 1539 aa11.08□□□□□ -0.64
GNE-205ENST00000539815 KDM5CP41229 1560 aa11.08□□□□□ -0.64
GNE-205ENST00000539815 EVA1CP58658 441 aa11.08□□□□□ -0.64
GNE-205ENST00000539815 SLC4A1APQ9BWU0 796 aaKnown RBP11.08□□□□□ -0.64
GNE-205ENST00000539815 DAXXQ9UER7 740 aaPredicted RBP11.08□□□□□ -0.64
GNE-205ENST00000539815 LRRC9Q6ZRR7 1453 aa11.07□□□□□ -0.64
GNE-205ENST00000539815 ABCA6Q8N139 1617 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms