RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 EIF2AK4Q9P2K8 1649 aaKnown RBP17.98■□□□□ 0.47
RTN3-209ENST00000538995 CROCC2H7BZ55 1655 aa17.98■□□□□ 0.47
RTN3-209ENST00000538995 DNMT1P26358 1616 aaKnown RBP17.98■□□□□ 0.47
RTN3-209ENST00000538995 DAPK1P53355 1430 aa17.98■□□□□ 0.47
RTN3-209ENST00000538995 RNF17Q9BXT8 1623 aaKnown RBP17.97■□□□□ 0.47
RTN3-209ENST00000538995 DUOX2Q9NRD8 1548 aa17.97■□□□□ 0.47
RTN3-209ENST00000538995 PHF23Q9BUL5 403 aaPredicted RBP17.96■□□□□ 0.47
RTN3-209ENST00000538995 KIF15Q9NS87 1388 aa17.94■□□□□ 0.46
RTN3-209ENST00000538995 PZPP20742 1482 aa17.94■□□□□ 0.46
RTN3-209ENST00000538995 ERBINQ96RT1 1412 aa17.93■□□□□ 0.46
RTN3-209ENST00000538995 WASHC2CQ9Y4E1 1318 aa17.93■□□□□ 0.46
RTN3-209ENST00000538995 MYO3AQ8NEV4 1616 aa17.91■□□□□ 0.46
RTN3-209ENST00000538995 ZNF142P52746 1687 aaPredicted RBP17.91■□□□□ 0.46
RTN3-209ENST00000538995 DMRT2Q9Y5R5 561 aa17.91■□□□□ 0.46
RTN3-209ENST00000538995 ZC3H13Q5T200 1668 aaKnown RBP17.9■□□□□ 0.46
RTN3-209ENST00000538995 ANKRD30AQ9BXX3 1397 aa17.9■□□□□ 0.46
RTN3-209ENST00000538995 NCOA1Q15788 1441 aa17.89■□□□□ 0.46
RTN3-209ENST00000538995 ABCC3O15438 1527 aa17.89■□□□□ 0.45
RTN3-209ENST00000538995 CEP170BQ9Y4F5 1589 aaPredicted RBP17.89■□□□□ 0.45
RTN3-209ENST00000538995 MROH1Q8NDA8 1641 aa17.89■□□□□ 0.45
RTN3-209ENST00000538995 ADGRL2O95490 1459 aa17.88■□□□□ 0.45
RTN3-209ENST00000538995 STRCQ7RTU9 1775 aa17.88■□□□□ 0.45
RTN3-209ENST00000538995 PRDM15P57071 1507 aaPredicted RBP17.88■□□□□ 0.45
RTN3-209ENST00000538995 TNRQ92752 1358 aa17.87■□□□□ 0.45
RTN3-209ENST00000538995 PTPRTO14522 1441 aa17.87■□□□□ 0.45
RTN3-209ENST00000538995 A2ML1A8K2U0 1454 aa17.87■□□□□ 0.45
RTN3-209ENST00000538995 PLA2R1Q13018 1463 aa17.87■□□□□ 0.45
RTN3-209ENST00000538995 RRP7BPQ9NSQ0 103 aa17.86■□□□□ 0.45
RTN3-209ENST00000538995 CAMSAP1Q5T5Y3 1602 aa17.86■□□□□ 0.45
RTN3-209ENST00000538995 FAM50AQ14320 339 aaKnown RBP17.85■□□□□ 0.45
RTN3-209ENST00000538995 DEPDC5O75140 1603 aa17.83■□□□□ 0.45
RTN3-209ENST00000538995 NLRP1Q9C000 1473 aa17.83■□□□□ 0.45
RTN3-209ENST00000538995 FBXO31Q5XUX0 539 aaPredicted RBP17.83■□□□□ 0.44
RTN3-209ENST00000538995 SPATA31D1Q6ZQQ2 1576 aa17.82■□□□□ 0.44
RTN3-209ENST00000538995 CHIC2Q9UKJ5 165 aa17.81■□□□□ 0.44
RTN3-209ENST00000538995 ARHGAP31Q2M1Z3 1444 aa17.81■□□□□ 0.44
RTN3-209ENST00000538995 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.8■□□□□ 0.44
RTN3-209ENST00000538995 PKD2Q13563 968 aa17.8■□□□□ 0.44
RTN3-209ENST00000538995 ERVK-7P63135 1459 aa17.8■□□□□ 0.44
RTN3-209ENST00000538995 KANK1Q14678 1352 aa17.79■□□□□ 0.44
RTN3-209ENST00000538995 FBXO41Q8TF61 875 aa17.79■□□□□ 0.44
RTN3-209ENST00000538995 LMTK2Q8IWU2 1503 aa17.78■□□□□ 0.44
RTN3-209ENST00000538995 VWDEQ8N2E2 1590 aa17.78■□□□□ 0.44
RTN3-209ENST00000538995 ANKRD50Q9ULJ7 1429 aa17.77■□□□□ 0.44
RTN3-209ENST00000538995 CEP152O94986 1710 aa17.77■□□□□ 0.44
RTN3-209ENST00000538995 ROCK1Q13464 1354 aa17.77■□□□□ 0.43
RTN3-209ENST00000538995 CERKQ8TCT0 537 aa17.75■□□□□ 0.43
RTN3-209ENST00000538995 UGGT1Q9NYU2 1555 aa17.74■□□□□ 0.43
RTN3-209ENST00000538995 NCKAP5LQ9HCH0 1330 aa17.73■□□□□ 0.43
RTN3-209ENST00000538995 THEMISQ8N1K5 641 aaPredicted RBP17.73■□□□□ 0.43
RTN3-209ENST00000538995 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.73■□□□□ 0.43
RTN3-209ENST00000538995 EFCAB6Q5THR3 1501 aa17.7■□□□□ 0.42
RTN3-209ENST00000538995 RRBP1Q9P2E9 1410 aaKnown RBP17.7■□□□□ 0.42
RTN3-209ENST00000538995 LTBP4Q8N2S1 1624 aa17.69■□□□□ 0.42
RTN3-209ENST00000538995 ANKLE2Q86XL3 938 aa17.68■□□□□ 0.42
RTN3-209ENST00000538995 PPARGC1BQ86YN6 1023 aaKnown RBP17.68■□□□□ 0.42
RTN3-209ENST00000538995 NEURL4Q96JN8 1562 aa17.68■□□□□ 0.42
RTN3-209ENST00000538995 POLR1AO95602 1720 aaPredicted RBP17.67■□□□□ 0.42
RTN3-209ENST00000538995 UNC13BO14795 1591 aa17.67■□□□□ 0.42
RTN3-209ENST00000538995 MED14O60244 1454 aa17.67■□□□□ 0.42
RTN3-209ENST00000538995 IQSEC2Q5JU85 1478 aa17.67■□□□□ 0.42
RTN3-209ENST00000538995 RPRD2Q5VT52 1461 aaKnown RBP17.67■□□□□ 0.42
RTN3-209ENST00000538995 NOS1P29475 1434 aa17.65■□□□□ 0.42
RTN3-209ENST00000538995 UBR1Q8IWV7 1749 aa17.64■□□□□ 0.41
RTN3-209ENST00000538995 TET3O43151 1660 aa17.63■□□□□ 0.41
RTN3-209ENST00000538995 NPHP4O75161 1426 aaPredicted RBP17.63■□□□□ 0.41
RTN3-209ENST00000538995 SLIT1O75093 1534 aa17.62■□□□□ 0.41
RTN3-209ENST00000538995 ZNF335Q9H4Z2 1342 aaPredicted RBP17.62■□□□□ 0.41
RTN3-209ENST00000538995 ARHGAP23Q9P227 1491 aa17.62■□□□□ 0.41
RTN3-209ENST00000538995 KDM5AP29375 1690 aaKnown RBP17.61■□□□□ 0.41
RTN3-209ENST00000538995 ITGAEP38570 1179 aa17.61■□□□□ 0.41
RTN3-209ENST00000538995 SYNMO15061 1565 aa17.61■□□□□ 0.41
RTN3-209ENST00000538995 SCAF11Q99590 1463 aaKnown RBP17.6■□□□□ 0.41
RTN3-209ENST00000538995 PIK3C2BO00750 1634 aa17.59■□□□□ 0.41
RTN3-209ENST00000538995 IQGAP3Q86VI3 1631 aa17.59■□□□□ 0.41
RTN3-209ENST00000538995 SLC52A1Q9NWF4 448 aa17.59■□□□□ 0.41
RTN3-209ENST00000538995 GCC2Q8IWJ2 1684 aa17.58■□□□□ 0.41
RTN3-209ENST00000538995 CFAP65Q6ZU64 1925 aaKnown RBP17.58■□□□□ 0.4
RTN3-209ENST00000538995 IQGAP1P46940 1657 aa17.58■□□□□ 0.4
RTN3-209ENST00000538995 TMEM2Q9UHN6 1383 aa17.57■□□□□ 0.4
RTN3-209ENST00000538995 ADGRB3O60242 1522 aa17.57■□□□□ 0.4
RTN3-209ENST00000538995 CPS1P31327 1500 aa17.57■□□□□ 0.4
RTN3-209ENST00000538995 IDI1Q13907 227 aa17.56■□□□□ 0.4
RTN3-209ENST00000538995 NUP155O75694 1391 aa17.55■□□□□ 0.4
RTN3-209ENST00000538995 STAG3Q9UJ98 1225 aa17.55■□□□□ 0.4
RTN3-209ENST00000538995 EID1Q9Y6B2 187 aa17.54■□□□□ 0.4
RTN3-209ENST00000538995 NAIPQ13075 1403 aa17.53■□□□□ 0.4
RTN3-209ENST00000538995 LTKP29376 864 aa17.52■□□□□ 0.4
RTN3-209ENST00000538995 TXNDC2Q86VQ3 553 aa17.52■□□□□ 0.4
RTN3-209ENST00000538995 HFM1A2PYH4 1435 aa17.52■□□□□ 0.4
RTN3-209ENST00000538995 E9PCH4 1651 aa17.52■□□□□ 0.39
RTN3-209ENST00000538995 TMEM131LA2VDJ0 1609 aa17.46■□□□□ 0.39
RTN3-209ENST00000538995 ZFYVE9O95405 1425 aa17.46■□□□□ 0.39
RTN3-209ENST00000538995 UBAP1LF5GYI3 381 aa17.43■□□□□ 0.38
RTN3-209ENST00000538995 HDGFP51858 240 aaKnown RBP17.43■□□□□ 0.38
RTN3-209ENST00000538995 RIMS2Q9UQ26 1411 aa17.42■□□□□ 0.38
RTN3-209ENST00000538995 LRRC7Q96NW7 1537 aa17.42■□□□□ 0.38
RTN3-209ENST00000538995 PLEKHG1Q9ULL1 1385 aa17.41■□□□□ 0.38
RTN3-209ENST00000538995 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.4■□□□□ 0.38
RTN3-209ENST00000538995 SPHKAPQ2M3C7 1700 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms