RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 HMGXB3Q12766 1538 aa8.59□□□□□ -1.03
VPS33A-203ENST00000536212 PRXQ9BXM0 1461 aa8.58□□□□□ -1.04
VPS33A-203ENST00000536212 ACIN1Q9UKV3 1341 aaKnown RBP8.58□□□□□ -1.04
VPS33A-203ENST00000536212 DIEXFQ68CQ4 756 aaKnown RBP8.58□□□□□ -1.04
VPS33A-203ENST00000536212 RYDENQ9NUL5 291 aaKnown RBP8.58□□□□□ -1.04
VPS33A-203ENST00000536212 LHX6Q9UPM6 363 aa8.58□□□□□ -1.04
VPS33A-203ENST00000536212 AXIN2Q9Y2T1 843 aa8.58□□□□□ -1.04
VPS33A-203ENST00000536212 ERICH3Q5RHP9 1530 aa8.58□□□□□ -1.04
VPS33A-203ENST00000536212 NLRP6P59044 892 aa8.57□□□□□ -1.04
VPS33A-203ENST00000536212 SLC34A2O95436 690 aa8.56□□□□□ -1.04
VPS33A-203ENST00000536212 ADGRD1Q6QNK2 874 aa8.56□□□□□ -1.04
VPS33A-203ENST00000536212 FBXO22Q8NEZ5 403 aa8.56□□□□□ -1.04
VPS33A-203ENST00000536212 C2orf72A6NCS6 295 aa8.54□□□□□ -1.04
VPS33A-203ENST00000536212 PCDHGA4Q9Y5G9 962 aa8.54□□□□□ -1.04
VPS33A-203ENST00000536212 ARHGAP33O14559 1287 aa8.53□□□□□ -1.04
VPS33A-203ENST00000536212 NEUROD1Q13562 356 aa8.53□□□□□ -1.04
VPS33A-203ENST00000536212 CFTRP13569 1480 aa8.51□□□□□ -1.05
VPS33A-203ENST00000536212 ARAP1Q96P48 1450 aa8.51□□□□□ -1.05
VPS33A-203ENST00000536212 CUX1P39880 1505 aa8.51□□□□□ -1.05
VPS33A-203ENST00000536212 PSDA5PKW4 1024 aaPredicted RBP8.51□□□□□ -1.05
VPS33A-203ENST00000536212 TK2O00142 265 aa8.51□□□□□ -1.05
VPS33A-203ENST00000536212 CENPBP07199 599 aaPredicted RBP8.51□□□□□ -1.05
VPS33A-203ENST00000536212 CLSPNQ9HAW4 1339 aa8.51□□□□□ -1.05
VPS33A-203ENST00000536212 HRO43593 1189 aa8.5□□□□□ -1.05
VPS33A-203ENST00000536212 DAXXQ9UER7 740 aaPredicted RBP8.5□□□□□ -1.05
VPS33A-203ENST00000536212 KIF27Q86VH2 1401 aa8.49□□□□□ -1.05
VPS33A-203ENST00000536212 TIMELESSQ9UNS1 1208 aa8.48□□□□□ -1.05
VPS33A-203ENST00000536212 NBR1Q14596 966 aa8.47□□□□□ -1.05
VPS33A-203ENST00000536212 MFRPQ9BY79 579 aa8.47□□□□□ -1.05
VPS33A-203ENST00000536212 RRBP1Q9P2E9 1410 aaKnown RBP8.46□□□□□ -1.05
VPS33A-203ENST00000536212 CUX2O14529 1486 aa8.46□□□□□ -1.05
VPS33A-203ENST00000536212 RGS20O76081 388 aa8.46□□□□□ -1.06
VPS33A-203ENST00000536212 KDM4FA0A1W2PPD8 638 aa8.45□□□□□ -1.06
VPS33A-203ENST00000536212 TULP1O00294 542 aaPredicted RBP8.45□□□□□ -1.06
VPS33A-203ENST00000536212 DMRTA1Q5VZB9 504 aa8.44□□□□□ -1.06
VPS33A-203ENST00000536212 DHX57Q6P158 1386 aaKnown RBP8.44□□□□□ -1.06
VPS33A-203ENST00000536212 ARHGAP35Q9NRY4 1499 aa8.43□□□□□ -1.06
VPS33A-203ENST00000536212 MAP3K1Q13233 1512 aa8.43□□□□□ -1.06
VPS33A-203ENST00000536212 KANK4Q5T7N3 995 aaPredicted RBP8.42□□□□□ -1.06
VPS33A-203ENST00000536212 IFFO2Q5TF58 517 aa8.42□□□□□ -1.06
VPS33A-203ENST00000536212 TMC2Q8TDI7 906 aa8.42□□□□□ -1.06
VPS33A-203ENST00000536212 KCTD12Q96CX2 325 aaKnown RBP8.42□□□□□ -1.06
VPS33A-203ENST00000536212 GTF3C3Q9Y5Q9 886 aa8.42□□□□□ -1.06
VPS33A-203ENST00000536212 IGF1RP08069 1367 aa8.41□□□□□ -1.06
VPS33A-203ENST00000536212 PSEN2P49810 448 aa8.41□□□□□ -1.06
VPS33A-203ENST00000536212 ARXQ96QS3 562 aa8.41□□□□□ -1.06
VPS33A-203ENST00000536212 CADPSQ9ULU8 1353 aa8.39□□□□□ -1.07
VPS33A-203ENST00000536212 PTCD2Q8WV60 388 aaKnown RBP8.39□□□□□ -1.07
VPS33A-203ENST00000536212 PRDM2Q13029 1718 aa8.39□□□□□ -1.07
VPS33A-203ENST00000536212 CCNB3Q8WWL7 1395 aa8.38□□□□□ -1.07
VPS33A-203ENST00000536212 IRX2Q9BZI1 471 aaPredicted RBP8.38□□□□□ -1.07
VPS33A-203ENST00000536212 STAC3Q96MF2 364 aa8.37□□□□□ -1.07
VPS33A-203ENST00000536212 RANGAP1P46060 587 aaPredicted RBP8.36□□□□□ -1.07
VPS33A-203ENST00000536212 PPP4R3BQ5MIZ7 849 aa8.36□□□□□ -1.07
VPS33A-203ENST00000536212 ERICH6Q7L0X2 663 aa8.36□□□□□ -1.07
VPS33A-203ENST00000536212 CARMIL1Q5VZK9 1371 aa8.35□□□□□ -1.07
VPS33A-203ENST00000536212 P3H3Q8IVL6 736 aa8.35□□□□□ -1.07
VPS33A-203ENST00000536212 FGD5Q6ZNL6 1462 aa8.34□□□□□ -1.07
VPS33A-203ENST00000536212 CADPS2Q86UW7 1296 aa8.34□□□□□ -1.07
VPS33A-203ENST00000536212 WDR70Q9NW82 654 aa8.34□□□□□ -1.07
VPS33A-203ENST00000536212 TIAM1Q13009 1591 aa8.34□□□□□ -1.07
VPS33A-203ENST00000536212 A0A0G2JS52 829 aa8.32□□□□□ -1.08
VPS33A-203ENST00000536212 VPS9D1Q9Y2B5 631 aa8.32□□□□□ -1.08
VPS33A-203ENST00000536212 LRRC9Q6ZRR7 1453 aa8.32□□□□□ -1.08
VPS33A-203ENST00000536212 FHAD1B1AJZ9 1412 aa8.31□□□□□ -1.08
VPS33A-203ENST00000536212 PTPN5P54829 565 aa8.31□□□□□ -1.08
VPS33A-203ENST00000536212 KCNH8Q96L42 1107 aa8.31□□□□□ -1.08
VPS33A-203ENST00000536212 PPP1R37O75864 691 aa8.3□□□□□ -1.08
VPS33A-203ENST00000536212 FOXK1P85037 733 aa8.3□□□□□ -1.08
VPS33A-203ENST00000536212 KCNK17Q96T54 332 aa8.3□□□□□ -1.08
VPS33A-203ENST00000536212 ABCA10Q8WWZ4 1543 aa8.29□□□□□ -1.08
VPS33A-203ENST00000536212 SLC4A5Q9BY07 1137 aa8.29□□□□□ -1.08
VPS33A-203ENST00000536212 RAB3GAP2Q9H2M9 1393 aa8.29□□□□□ -1.08
VPS33A-203ENST00000536212 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.29□□□□□ -1.08
VPS33A-203ENST00000536212 AQRO60306 1485 aaKnown RBP eCLIP8.29□□□□□ -1.08
VPS33A-203ENST00000536212 MAPKBP1O60336 1514 aa8.29□□□□□ -1.08
VPS33A-203ENST00000536212 SETD5Q9C0A6 1442 aa8.29□□□□□ -1.08
VPS33A-203ENST00000536212 FANCD2Q9BXW9 1451 aa8.28□□□□□ -1.08
VPS33A-203ENST00000536212 DNMBPQ6XZF7 1577 aa8.27□□□□□ -1.09
VPS33A-203ENST00000536212 PHLDB1Q86UU1 1377 aa8.27□□□□□ -1.09
VPS33A-203ENST00000536212 TBC1D12O60347 775 aa8.27□□□□□ -1.09
VPS33A-203ENST00000536212 THSD4Q6ZMP0 1018 aa8.27□□□□□ -1.09
VPS33A-203ENST00000536212 KCNV2Q8TDN2 545 aa8.27□□□□□ -1.09
VPS33A-203ENST00000536212 YTHDC1Q96MU7 727 aaKnown RBP8.27□□□□□ -1.09
VPS33A-203ENST00000536212 EFCAB5A4FU69 1503 aa8.27□□□□□ -1.09
VPS33A-203ENST00000536212 CFAP43Q8NDM7 1665 aa8.27□□□□□ -1.09
VPS33A-203ENST00000536212 BHMG1C9JSJ3 638 aaPredicted RBP8.26□□□□□ -1.09
VPS33A-203ENST00000536212 PLPP6Q8IY26 295 aa8.26□□□□□ -1.09
VPS33A-203ENST00000536212 CC2D2AQ9P2K1 1620 aa8.25□□□□□ -1.09
VPS33A-203ENST00000536212 TOPBP1Q92547 1522 aa8.25□□□□□ -1.09
VPS33A-203ENST00000536212 CASKIN1Q8WXD9 1431 aa8.25□□□□□ -1.09
VPS33A-203ENST00000536212 FYCO1Q9BQS8 1478 aa8.25□□□□□ -1.09
VPS33A-203ENST00000536212 PCF11O94913 1555 aaKnown RBP8.24□□□□□ -1.09
VPS33A-203ENST00000536212 GPHNQ9NQX3 736 aaPredicted RBP8.24□□□□□ -1.09
VPS33A-203ENST00000536212 POLA1P09884 1462 aaPredicted RBP8.24□□□□□ -1.09
VPS33A-203ENST00000536212 BCL2L12Q9HB09 334 aa8.23□□□□□ -1.09
VPS33A-203ENST00000536212 CUL7Q14999 1698 aa8.23□□□□□ -1.09
VPS33A-203ENST00000536212 RAD54L2Q9Y4B4 1467 aa8.22□□□□□ -1.09
VPS33A-203ENST00000536212 DSG2Q14126 1118 aa8.21□□□□□ -1.1
VPS33A-203ENST00000536212 HOMEZQ8IX15 550 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms