RNA–Protein interactions for RNA: ENST00000533789.5

HIF3A-216, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-216ENST00000533789 DMRT2Q9Y5R5 561 aa29.09■■■□□ 2.25
HIF3A-216ENST00000533789 PTPRTO14522 1441 aa29.07■■■□□ 2.24
HIF3A-216ENST00000533789 ZC3H13Q5T200 1668 aaKnown RBP29.07■■■□□ 2.24
HIF3A-216ENST00000533789 PTPN23Q9H3S7 1636 aa29.06■■■□□ 2.24
HIF3A-216ENST00000533789 TSPY4P0CV99 314 aa29.05■■■□□ 2.24
HIF3A-216ENST00000533789 TSPY10P0CW01 314 aa29.05■■■□□ 2.24
HIF3A-216ENST00000533789 KIF3BO15066 747 aa29.03■■■□□ 2.24
HIF3A-216ENST00000533789 POLR1AO95602 1720 aaPredicted RBP29■■■□□ 2.23
HIF3A-216ENST00000533789 PZPP20742 1482 aa29■■■□□ 2.23
HIF3A-216ENST00000533789 PLA2R1Q13018 1463 aa29■■■□□ 2.23
HIF3A-216ENST00000533789 CERKQ8TCT0 537 aa29■■■□□ 2.23
HIF3A-216ENST00000533789 DNMT1P26358 1616 aaKnown RBP28.99■■■□□ 2.23
HIF3A-216ENST00000533789 APLP2Q06481 763 aa28.99■■■□□ 2.23
HIF3A-216ENST00000533789 CEP152O94986 1710 aa28.99■■■□□ 2.23
HIF3A-216ENST00000533789 MROH1Q8NDA8 1641 aa28.98■■■□□ 2.23
HIF3A-216ENST00000533789 SHANK2Q9UPX8 1470 aa28.97■■■□□ 2.23
HIF3A-216ENST00000533789 A2ML1A8K2U0 1454 aa28.97■■■□□ 2.23
HIF3A-216ENST00000533789 DUOX2Q9NRD8 1548 aa28.95■■■□□ 2.23
HIF3A-216ENST00000533789 CFAP65Q6ZU64 1925 aaKnown RBP28.94■■■□□ 2.22
HIF3A-216ENST00000533789 TCOF1Q13428 1488 aaKnown RBP28.93■■■□□ 2.22
HIF3A-216ENST00000533789 LTBP4Q8N2S1 1624 aa28.93■■■□□ 2.22
HIF3A-216ENST00000533789 ABCC3O15438 1527 aa28.92■■■□□ 2.22
HIF3A-216ENST00000533789 FGD6Q6ZV73 1430 aa28.91■■■□□ 2.22
HIF3A-216ENST00000533789 WASHC2CQ9Y4E1 1318 aa28.91■■■□□ 2.22
HIF3A-216ENST00000533789 TNRQ92752 1358 aa28.89■■■□□ 2.22
HIF3A-216ENST00000533789 ABCC5O15440 1437 aa28.87■■■□□ 2.21
HIF3A-216ENST00000533789 PRDM15P57071 1507 aaPredicted RBP28.87■■■□□ 2.21
HIF3A-216ENST00000533789 DEPDC5O75140 1603 aa28.87■■■□□ 2.21
HIF3A-216ENST00000533789 DAPK1P53355 1430 aa28.86■■■□□ 2.21
HIF3A-216ENST00000533789 SPATA31D1Q6ZQQ2 1576 aa28.85■■■□□ 2.21
HIF3A-216ENST00000533789 ERBINQ96RT1 1412 aa28.84■■■□□ 2.21
HIF3A-216ENST00000533789 NLRP1Q9C000 1473 aa28.84■■■□□ 2.21
HIF3A-216ENST00000533789 PKD2Q13563 968 aa28.83■■■□□ 2.21
HIF3A-216ENST00000533789 FBXO31Q5XUX0 539 aaPredicted RBP28.83■■■□□ 2.21
HIF3A-216ENST00000533789 NCKAP5LQ9HCH0 1330 aa28.83■■■□□ 2.21
HIF3A-216ENST00000533789 KIF15Q9NS87 1388 aa28.82■■■□□ 2.2
HIF3A-216ENST00000533789 IQSEC2Q5JU85 1478 aa28.82■■■□□ 2.2
HIF3A-216ENST00000533789 NEURL4Q96JN8 1562 aa28.82■■■□□ 2.2
HIF3A-216ENST00000533789 UGGT1Q9NYU2 1555 aa28.79■■■□□ 2.2
HIF3A-216ENST00000533789 ERVK-7P63135 1459 aa28.77■■■□□ 2.2
HIF3A-216ENST00000533789 UBR1Q8IWV7 1749 aa28.74■■■□□ 2.19
HIF3A-216ENST00000533789 ADGRL2O95490 1459 aa28.7■■■□□ 2.18
HIF3A-216ENST00000533789 IQGAP1P46940 1657 aa28.7■■■□□ 2.18
HIF3A-216ENST00000533789 ZNF335Q9H4Z2 1342 aaPredicted RBP28.69■■■□□ 2.18
HIF3A-216ENST00000533789 RRP7BPQ9NSQ0 103 aa28.69■■■□□ 2.18
HIF3A-216ENST00000533789 ANKRD30AQ9BXX3 1397 aa28.69■■■□□ 2.18
HIF3A-216ENST00000533789 ARHGAP31Q2M1Z3 1444 aa28.68■■■□□ 2.18
HIF3A-216ENST00000533789 VWDEQ8N2E2 1590 aa28.67■■■□□ 2.18
HIF3A-216ENST00000533789 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.67■■■□□ 2.18
HIF3A-216ENST00000533789 THEMISQ8N1K5 641 aaPredicted RBP28.64■■■□□ 2.18
HIF3A-216ENST00000533789 MED14O60244 1454 aa28.64■■■□□ 2.17
HIF3A-216ENST00000533789 LMTK2Q8IWU2 1503 aa28.64■■■□□ 2.17
HIF3A-216ENST00000533789 KDM5AP29375 1690 aaKnown RBP28.61■■■□□ 2.17
HIF3A-216ENST00000533789 CHIC2Q9UKJ5 165 aa28.61■■■□□ 2.17
HIF3A-216ENST00000533789 PIK3C2BO00750 1634 aa28.61■■■□□ 2.17
HIF3A-216ENST00000533789 KANK1Q14678 1352 aa28.61■■■□□ 2.17
HIF3A-216ENST00000533789 ANKLE2Q86XL3 938 aa28.59■■■□□ 2.17
HIF3A-216ENST00000533789 CPS1P31327 1500 aa28.59■■■□□ 2.17
HIF3A-216ENST00000533789 NPHP4O75161 1426 aaPredicted RBP28.58■■■□□ 2.17
HIF3A-216ENST00000533789 EFCAB6Q5THR3 1501 aa28.58■■■□□ 2.17
HIF3A-216ENST00000533789 FAM50AQ14320 339 aaKnown RBP28.56■■■□□ 2.16
HIF3A-216ENST00000533789 STRCP1A6NGW2 1772 aa28.55■■■□□ 2.16
HIF3A-216ENST00000533789 GCC2Q8IWJ2 1684 aa28.54■■■□□ 2.16
HIF3A-216ENST00000533789 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.54■■■□□ 2.16
HIF3A-216ENST00000533789 SLIT1O75093 1534 aa28.53■■■□□ 2.16
HIF3A-216ENST00000533789 SYNMO15061 1565 aa28.53■■■□□ 2.16
HIF3A-216ENST00000533789 TET3O43151 1660 aa28.52■■■□□ 2.16
HIF3A-216ENST00000533789 UNC13BO14795 1591 aa28.52■■■□□ 2.16
HIF3A-216ENST00000533789 ARHGAP23Q9P227 1491 aa28.51■■■□□ 2.15
HIF3A-216ENST00000533789 ANKRD50Q9ULJ7 1429 aa28.5■■■□□ 2.15
HIF3A-216ENST00000533789 SCAF11Q99590 1463 aaKnown RBP28.48■■■□□ 2.15
HIF3A-216ENST00000533789 MYO5BQ9ULV0 1848 aa28.48■■■□□ 2.15
HIF3A-216ENST00000533789 RPRD2Q5VT52 1461 aaKnown RBP28.43■■■□□ 2.14
HIF3A-216ENST00000533789 NOS1P29475 1434 aa28.43■■■□□ 2.14
HIF3A-216ENST00000533789 UBAP1LF5GYI3 381 aa28.42■■■□□ 2.14
HIF3A-216ENST00000533789 ADGRB3O60242 1522 aa28.42■■■□□ 2.14
HIF3A-216ENST00000533789 IQGAP3Q86VI3 1631 aa28.4■■■□□ 2.14
HIF3A-216ENST00000533789 ROCK1Q13464 1354 aa28.4■■■□□ 2.14
HIF3A-216ENST00000533789 E9PCH4 1651 aa28.4■■■□□ 2.14
HIF3A-216ENST00000533789 XIRP1Q702N8 1843 aaKnown RBP28.39■■■□□ 2.13
HIF3A-216ENST00000533789 TMEM2Q9UHN6 1383 aa28.36■■■□□ 2.13
HIF3A-216ENST00000533789 LTKP29376 864 aa28.34■■■□□ 2.13
HIF3A-216ENST00000533789 ALKQ9UM73 1620 aa28.33■■■□□ 2.13
HIF3A-216ENST00000533789 LRRC7Q96NW7 1537 aa28.33■■■□□ 2.13
HIF3A-216ENST00000533789 TXNDC2Q86VQ3 553 aa28.32■■■□□ 2.12
HIF3A-216ENST00000533789 IDI1Q13907 227 aa28.31■■■□□ 2.12
HIF3A-216ENST00000533789 STAG3Q9UJ98 1225 aa28.31■■■□□ 2.12
HIF3A-216ENST00000533789 EID1Q9Y6B2 187 aa28.31■■■□□ 2.12
HIF3A-216ENST00000533789 TMEM131LA2VDJ0 1609 aa28.29■■■□□ 2.12
HIF3A-216ENST00000533789 TOM1O60784 492 aa28.26■■■□□ 2.11
HIF3A-216ENST00000533789 PPARGC1BQ86YN6 1023 aaKnown RBP28.26■■■□□ 2.11
HIF3A-216ENST00000533789 SLC52A1Q9NWF4 448 aa28.26■■■□□ 2.11
HIF3A-216ENST00000533789 DISP3Q9P2K9 1392 aa28.24■■■□□ 2.11
HIF3A-216ENST00000533789 SPHKAPQ2M3C7 1700 aa28.23■■■□□ 2.11
HIF3A-216ENST00000533789 NWD1Q149M9 1564 aa28.2■■■□□ 2.11
HIF3A-216ENST00000533789 RRBP1Q9P2E9 1410 aaKnown RBP28.2■■■□□ 2.11
HIF3A-216ENST00000533789 SCAF1Q9H7N4 1312 aaKnown RBP28.19■■■□□ 2.1
HIF3A-216ENST00000533789 ITGAEP38570 1179 aa28.19■■■□□ 2.1
HIF3A-216ENST00000533789 CHD2O14647 1828 aaKnown RBP28.19■■■□□ 2.1
HIF3A-216ENST00000533789 ZFYVE9O95405 1425 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms