RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 POTEB3A0JP26 581 aa8.81□□□□□ -1
CD44-233ENST00000531141 FAM205CA6NFA0 338 aa8.81□□□□□ -1
CD44-233ENST00000531141 GPR37O15354 613 aa8.81□□□□□ -1
CD44-233ENST00000531141 POTEBQ6S5H4 581 aa8.81□□□□□ -1
CD44-233ENST00000531141 ZC3H15Q8WU90 426 aaKnown RBP8.81□□□□□ -1
CD44-233ENST00000531141 RBM33Q96EV2 1170 aaKnown RBP8.81□□□□□ -1
CD44-233ENST00000531141 ERBB3P21860 1342 aa8.8□□□□□ -1
CD44-233ENST00000531141 ADAM33Q9BZ11 813 aa8.8□□□□□ -1
CD44-233ENST00000531141 BCL2L12Q9HB09 334 aa8.8□□□□□ -1
CD44-233ENST00000531141 FCHSD2O94868 740 aa8.79□□□□□ -1
CD44-233ENST00000531141 CDHR5Q9HBB8 845 aa8.79□□□□□ -1
CD44-233ENST00000531141 TSR1Q2NL82 804 aaKnown RBP8.78□□□□□ -1
CD44-233ENST00000531141 VARS2Q5ST30 1063 aaKnown RBP8.78□□□□□ -1
CD44-233ENST00000531141 CERKQ8TCT0 537 aa8.78□□□□□ -1
CD44-233ENST00000531141 PTGDRQ13258 359 aa8.77□□□□□ -1.01
CD44-233ENST00000531141 HIC1Q14526 733 aa8.77□□□□□ -1.01
CD44-233ENST00000531141 C6orf132Q5T0Z8 1188 aa8.77□□□□□ -1.01
CD44-233ENST00000531141 KCNH8Q96L42 1107 aa8.77□□□□□ -1.01
CD44-233ENST00000531141 ZMYND10O75800 440 aa8.76□□□□□ -1.01
CD44-233ENST00000531141 PTPREP23469 700 aa8.76□□□□□ -1.01
CD44-233ENST00000531141 PPP1R3GB7ZBB8 358 aa8.75□□□□□ -1.01
CD44-233ENST00000531141 PRKCSHP14314 528 aaPredicted RBP8.75□□□□□ -1.01
CD44-233ENST00000531141 GNPATO15228 680 aa8.74□□□□□ -1.01
CD44-233ENST00000531141 PBX2P40425 430 aa8.74□□□□□ -1.01
CD44-233ENST00000531141 BARGINQ6ZT62 677 aa8.74□□□□□ -1.01
CD44-233ENST00000531141 RBM27Q9P2N5 1060 aaKnown RBP8.74□□□□□ -1.01
CD44-233ENST00000531141 KCNK17Q96T54 332 aa8.72□□□□□ -1.01
CD44-233ENST00000531141 NPDC1Q9NQX5 325 aaPredicted RBP8.72□□□□□ -1.01
CD44-233ENST00000531141 MAP2K5Q13163 448 aa8.71□□□□□ -1.02
CD44-233ENST00000531141 ZNF687Q8N1G0 1237 aa8.71□□□□□ -1.02
CD44-233ENST00000531141 ARHGAP33O14559 1287 aa8.69□□□□□ -1.02
CD44-233ENST00000531141 COL9A1P20849 921 aa8.68□□□□□ -1.02
CD44-233ENST00000531141 PADI6Q6TGC4 694 aa8.68□□□□□ -1.02
CD44-233ENST00000531141 PRSS12P56730 875 aa8.67□□□□□ -1.02
CD44-233ENST00000531141 MINK1Q8N4C8 1332 aaPredicted RBP8.67□□□□□ -1.02
CD44-233ENST00000531141 CDCA7LQ96GN5 454 aa8.67□□□□□ -1.02
CD44-233ENST00000531141 POTEEQ6S8J3 1075 aa8.66□□□□□ -1.02
CD44-233ENST00000531141 KRI1Q8N9T8 703 aaKnown RBP8.66□□□□□ -1.02
CD44-233ENST00000531141 TTC13Q8NBP0 860 aa8.66□□□□□ -1.02
CD44-233ENST00000531141 SLC24A3Q9HC58 644 aa8.66□□□□□ -1.02
CD44-233ENST00000531141 FECHP22830 423 aa8.65□□□□□ -1.02
CD44-233ENST00000531141 PSEN2P49810 448 aa8.65□□□□□ -1.02
CD44-233ENST00000531141 CCDC102AQ96A19 550 aa8.65□□□□□ -1.02
CD44-233ENST00000531141 ZBED2Q9BTP6 218 aa8.65□□□□□ -1.02
CD44-233ENST00000531141 SLC4A5Q9BY07 1137 aa8.65□□□□□ -1.02
CD44-233ENST00000531141 TRIM6-TRIM34B2RNG4 842 aa8.64□□□□□ -1.03
CD44-233ENST00000531141 RNF166Q96A37 237 aaPredicted RBP8.64□□□□□ -1.03
CD44-233ENST00000531141 AK7Q96M32 723 aa8.64□□□□□ -1.03
CD44-233ENST00000531141 NBPF26B4DH59 902 aa8.63□□□□□ -1.03
CD44-233ENST00000531141 IRF6O14896 467 aa8.63□□□□□ -1.03
CD44-233ENST00000531141 ONECUT3O60422 494 aaPredicted RBP8.63□□□□□ -1.03
CD44-233ENST00000531141 AXIN2Q9Y2T1 843 aa8.63□□□□□ -1.03
CD44-233ENST00000531141 DMRTA1Q5VZB9 504 aa8.62□□□□□ -1.03
CD44-233ENST00000531141 LSM11P83369 360 aaKnown RBP eCLIP8.61□□□□□ -1.03
CD44-233ENST00000531141 PROX2Q3B8N5 592 aa8.61□□□□□ -1.03
CD44-233ENST00000531141 TSKSQ9UJT2 592 aa8.61□□□□□ -1.03
CD44-233ENST00000531141 ADGRG1Q9Y653 693 aa8.61□□□□□ -1.03
CD44-233ENST00000531141 TK2O00142 265 aa8.6□□□□□ -1.03
CD44-233ENST00000531141 FAM198AQ9UFP1 575 aa8.6□□□□□ -1.03
CD44-233ENST00000531141 OATP04181 439 aa8.59□□□□□ -1.03
CD44-233ENST00000531141 PACS2Q86VP3 889 aa8.59□□□□□ -1.03
CD44-233ENST00000531141 RABGEF1Q9UJ41 708 aa8.59□□□□□ -1.03
CD44-233ENST00000531141 TRIM66O15016 1216 aa8.58□□□□□ -1.04
CD44-233ENST00000531141 METTL3Q86U44 580 aaKnown RBP8.58□□□□□ -1.04
CD44-233ENST00000531141 RBM46Q8TBY0 533 aaKnown RBP8.58□□□□□ -1.04
CD44-233ENST00000531141 MYT1LQ9UL68 1186 aa8.58□□□□□ -1.04
CD44-233ENST00000531141 VPS9D1Q9Y2B5 631 aa8.58□□□□□ -1.04
CD44-233ENST00000531141 AMHR2Q16671 573 aa8.57□□□□□ -1.04
CD44-233ENST00000531141 PXYLP1Q8TE99 480 aa8.57□□□□□ -1.04
CD44-233ENST00000531141 NBPF3Q9H094 633 aa8.57□□□□□ -1.04
CD44-233ENST00000531141 ADGRD1Q6QNK2 874 aa8.56□□□□□ -1.04
CD44-233ENST00000531141 PNMA3Q9UL41 463 aa8.56□□□□□ -1.04
CD44-233ENST00000531141 NUDT18Q6ZVK8 323 aa8.55□□□□□ -1.04
CD44-233ENST00000531141 TATDN2Q93075 761 aa8.55□□□□□ -1.04
CD44-233ENST00000531141 KIAA1468Q9P260 1216 aa8.55□□□□□ -1.04
CD44-233ENST00000531141 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.54□□□□□ -1.04
CD44-233ENST00000531141 PDE4DQ08499 809 aa8.54□□□□□ -1.04
CD44-233ENST00000531141 FAM161AQ3B820 660 aa8.54□□□□□ -1.04
CD44-233ENST00000531141 EYA1Q99502 592 aa8.54□□□□□ -1.04
CD44-233ENST00000531141 DNAJB2P25686 324 aa8.53□□□□□ -1.04
CD44-233ENST00000531141 CLCN1P35523 988 aa8.52□□□□□ -1.05
CD44-233ENST00000531141 BRPF1P55201 1214 aaPredicted RBP8.52□□□□□ -1.05
CD44-233ENST00000531141 TTLL12Q14166 644 aaPredicted RBP8.52□□□□□ -1.05
CD44-233ENST00000531141 FAM98CQ17RN3 349 aaKnown RBP8.52□□□□□ -1.05
CD44-233ENST00000531141 LAPTM4BQ86VI4 370 aa8.52□□□□□ -1.05
CD44-233ENST00000531141 C3orf80F5H4A9 247 aa8.51□□□□□ -1.05
CD44-233ENST00000531141 HRO43593 1189 aa8.51□□□□□ -1.05
CD44-233ENST00000531141 NEUROD2Q15784 382 aa8.51□□□□□ -1.05
CD44-233ENST00000531141 PARP9Q8IXQ6 854 aa8.51□□□□□ -1.05
CD44-233ENST00000531141 PHOX2BQ99453 314 aa8.51□□□□□ -1.05
CD44-233ENST00000531141 SEPT9Q9UHD8 586 aaPredicted RBP8.51□□□□□ -1.05
CD44-233ENST00000531141 RCCD1A6NED2 376 aa8.5□□□□□ -1.05
CD44-233ENST00000531141 BHMG1C9JSJ3 638 aaPredicted RBP8.5□□□□□ -1.05
CD44-233ENST00000531141 SMAPO00193 183 aa8.5□□□□□ -1.05
CD44-233ENST00000531141 ANKRD13DQ6ZTN6 518 aa8.5□□□□□ -1.05
CD44-233ENST00000531141 MRPL50Q8N5N7 158 aaKnown RBP8.49□□□□□ -1.05
CD44-233ENST00000531141 TMEM134Q9H6X4 195 aa8.49□□□□□ -1.05
CD44-233ENST00000531141 GPCPD1Q9NPB8 672 aa8.49□□□□□ -1.05
CD44-233ENST00000531141 MDM2Q00987 491 aaPredicted RBP8.48□□□□□ -1.05
CD44-233ENST00000531141 GIGYF2Q6Y7W6 1299 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms