RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 FOSBP53539 338 aa7.04□□□□□ -1.28
CD44-229ENST00000528672 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.04□□□□□ -1.28
CD44-229ENST00000528672 FBXW7Q969H0 707 aa7.04□□□□□ -1.28
CD44-229ENST00000528672 KCTD12Q96CX2 325 aaKnown RBP7.04□□□□□ -1.28
CD44-229ENST00000528672 PHF14O94880 888 aa7.03□□□□□ -1.28
CD44-229ENST00000528672 EPAS1Q99814 870 aa7.03□□□□□ -1.28
CD44-229ENST00000528672 LMOD2Q6P5Q4 547 aa7.02□□□□□ -1.29
CD44-229ENST00000528672 STAC3Q96MF2 364 aa7.02□□□□□ -1.29
CD44-229ENST00000528672 PRIM1P49642 420 aaKnown RBP7.01□□□□□ -1.29
CD44-229ENST00000528672 RBM26Q5T8P6 1007 aaKnown RBP7.01□□□□□ -1.29
CD44-229ENST00000528672 BCL2L12Q9HB09 334 aa7.01□□□□□ -1.29
CD44-229ENST00000528672 TESPA1A2RU30 521 aaPredicted RBP7□□□□□ -1.29
CD44-229ENST00000528672 TYW1BQ6NUM6 668 aa6.99□□□□□ -1.29
CD44-229ENST00000528672 ZNF454Q8N9F8 522 aa6.99□□□□□ -1.29
CD44-229ENST00000528672 ZDHHC16Q969W1 377 aa6.99□□□□□ -1.29
CD44-229ENST00000528672 KCNH8Q96L42 1107 aa6.99□□□□□ -1.29
CD44-229ENST00000528672 RGS20O76081 388 aa6.98□□□□□ -1.29
CD44-229ENST00000528672 IFFO2Q5TF58 517 aa6.98□□□□□ -1.29
CD44-229ENST00000528672 KCNK17Q96T54 332 aa6.98□□□□□ -1.29
CD44-229ENST00000528672 VPS9D1Q9Y2B5 631 aa6.98□□□□□ -1.29
CD44-229ENST00000528672 PCDHGA10Q9Y5H3 936 aa6.98□□□□□ -1.29
CD44-229ENST00000528672 PTPN5P54829 565 aa6.96□□□□□ -1.3
CD44-229ENST00000528672 SLC4A5Q9BY07 1137 aa6.96□□□□□ -1.3
CD44-229ENST00000528672 PTPREP23469 700 aa6.95□□□□□ -1.3
CD44-229ENST00000528672 EN1Q05925 392 aaPredicted RBP6.95□□□□□ -1.3
CD44-229ENST00000528672 GRXCR2A6NFK2 248 aa6.94□□□□□ -1.3
CD44-229ENST00000528672 ZC3H15Q8WU90 426 aaKnown RBP6.94□□□□□ -1.3
CD44-229ENST00000528672 DDX12PQ92771 950 aa6.94□□□□□ -1.3
CD44-229ENST00000528672 PPP1R3GB7ZBB8 358 aa6.93□□□□□ -1.3
CD44-229ENST00000528672 SMYD5Q6GMV2 418 aa6.93□□□□□ -1.3
CD44-229ENST00000528672 CERKQ8TCT0 537 aa6.93□□□□□ -1.3
CD44-229ENST00000528672 BHMG1C9JSJ3 638 aaPredicted RBP6.92□□□□□ -1.3
CD44-229ENST00000528672 ADAM33Q9BZ11 813 aa6.92□□□□□ -1.3
CD44-229ENST00000528672 IRX2Q9BZI1 471 aaPredicted RBP6.92□□□□□ -1.3
CD44-229ENST00000528672 ONECUT3O60422 494 aaPredicted RBP6.91□□□□□ -1.3
CD44-229ENST00000528672 OSBPP22059 807 aa6.91□□□□□ -1.3
CD44-229ENST00000528672 THSD4Q6ZMP0 1018 aa6.91□□□□□ -1.3
CD44-229ENST00000528672 SLC24A3Q9HC58 644 aa6.91□□□□□ -1.3
CD44-229ENST00000528672 RBM27Q9P2N5 1060 aaKnown RBP6.91□□□□□ -1.3
CD44-229ENST00000528672 A0A0G2JS52 829 aa6.9□□□□□ -1.3
CD44-229ENST00000528672 TULP1O00294 542 aaPredicted RBP6.89□□□□□ -1.31
CD44-229ENST00000528672 FECHP22830 423 aa6.89□□□□□ -1.31
CD44-229ENST00000528672 C6orf132Q5T0Z8 1188 aa6.89□□□□□ -1.31
CD44-229ENST00000528672 GOLGA8CPA6NN73 597 aa6.88□□□□□ -1.31
CD44-229ENST00000528672 MAP3K7O43318 606 aa6.88□□□□□ -1.31
CD44-229ENST00000528672 ZBED2Q9BTP6 218 aa6.88□□□□□ -1.31
CD44-229ENST00000528672 CDHR5Q9HBB8 845 aa6.88□□□□□ -1.31
CD44-229ENST00000528672 GPR37O15354 613 aa6.87□□□□□ -1.31
CD44-229ENST00000528672 MRPL50Q8N5N7 158 aaKnown RBP6.87□□□□□ -1.31
CD44-229ENST00000528672 WNT2BQ93097 391 aa6.87□□□□□ -1.31
CD44-229ENST00000528672 RBM33Q96EV2 1170 aaKnown RBP6.84□□□□□ -1.31
CD44-229ENST00000528672 RABGEF1Q9UJ41 708 aa6.84□□□□□ -1.31
CD44-229ENST00000528672 ZMYND10O75800 440 aa6.83□□□□□ -1.32
CD44-229ENST00000528672 COL9A1P20849 921 aa6.83□□□□□ -1.32
CD44-229ENST00000528672 TSR1Q2NL82 804 aaKnown RBP6.83□□□□□ -1.32
CD44-229ENST00000528672 NBPF3Q9H094 633 aa6.83□□□□□ -1.32
CD44-229ENST00000528672 NUTM2FA1L443 756 aa6.82□□□□□ -1.32
CD44-229ENST00000528672 TRIM6-TRIM34B2RNG4 842 aa6.82□□□□□ -1.32
CD44-229ENST00000528672 FAM161AQ3B820 660 aa6.82□□□□□ -1.32
CD44-229ENST00000528672 LAPTM4BQ86VI4 370 aa6.82□□□□□ -1.32
CD44-229ENST00000528672 GPIHBP1Q8IV16 184 aa6.82□□□□□ -1.32
CD44-229ENST00000528672 PRSS12P56730 875 aa6.81□□□□□ -1.32
CD44-229ENST00000528672 PTGDRQ13258 359 aa6.81□□□□□ -1.32
CD44-229ENST00000528672 TTC13Q8NBP0 860 aa6.81□□□□□ -1.32
CD44-229ENST00000528672 GPBP1L1Q9HC44 474 aaPredicted RBP6.81□□□□□ -1.32
CD44-229ENST00000528672 NPDC1Q9NQX5 325 aaPredicted RBP6.81□□□□□ -1.32
CD44-229ENST00000528672 FCHSD2O94868 740 aa6.8□□□□□ -1.32
CD44-229ENST00000528672 BRPF1P55201 1214 aaPredicted RBP6.8□□□□□ -1.32
CD44-229ENST00000528672 ITGBL1O95965 494 aaPredicted RBP6.79□□□□□ -1.32
CD44-229ENST00000528672 HIC1Q14526 733 aa6.79□□□□□ -1.32
CD44-229ENST00000528672 BARGINQ6ZT62 677 aa6.79□□□□□ -1.32
CD44-229ENST00000528672 PACS2Q86VP3 889 aa6.79□□□□□ -1.32
CD44-229ENST00000528672 NLRP7Q8WX94 980 aa6.79□□□□□ -1.32
CD44-229ENST00000528672 CDCA7LQ96GN5 454 aa6.79□□□□□ -1.32
CD44-229ENST00000528672 NBPF26B4DH59 902 aa6.78□□□□□ -1.32
CD44-229ENST00000528672 C3orf80F5H4A9 247 aa6.77□□□□□ -1.33
CD44-229ENST00000528672 ANKK1Q8NFD2 765 aa6.77□□□□□ -1.33
CD44-229ENST00000528672 PROX2Q3B8N5 592 aa6.76□□□□□ -1.33
CD44-229ENST00000528672 TSKSQ9UJT2 592 aa6.76□□□□□ -1.33
CD44-229ENST00000528672 FAM98CQ17RN3 349 aaKnown RBP6.75□□□□□ -1.33
CD44-229ENST00000528672 Q6ZNB5 142 aa6.75□□□□□ -1.33
CD44-229ENST00000528672 KIAA1468Q9P260 1216 aa6.75□□□□□ -1.33
CD44-229ENST00000528672 SOWAHBA6NEL2 793 aa6.74□□□□□ -1.33
CD44-229ENST00000528672 GNPATO15228 680 aa6.74□□□□□ -1.33
CD44-229ENST00000528672 NEUROD2Q15784 382 aa6.74□□□□□ -1.33
CD44-229ENST00000528672 NYAP1Q6ZVC0 841 aa6.74□□□□□ -1.33
CD44-229ENST00000528672 KRI1Q8N9T8 703 aaKnown RBP6.74□□□□□ -1.33
CD44-229ENST00000528672 PHOX2BQ99453 314 aa6.74□□□□□ -1.33
CD44-229ENST00000528672 BCAMP50895 628 aa6.73□□□□□ -1.33
CD44-229ENST00000528672 PADI6Q6TGC4 694 aa6.73□□□□□ -1.33
CD44-229ENST00000528672 REPIN1Q9BWE0 567 aaKnown RBP6.73□□□□□ -1.33
CD44-229ENST00000528672 FAM198AQ9UFP1 575 aa6.73□□□□□ -1.33
CD44-229ENST00000528672 TRIM66O15016 1216 aa6.72□□□□□ -1.33
CD44-229ENST00000528672 TATDN2Q93075 761 aa6.72□□□□□ -1.33
CD44-229ENST00000528672 CCDC102AQ96A19 550 aa6.72□□□□□ -1.33
CD44-229ENST00000528672 OATP04181 439 aa6.71□□□□□ -1.34
CD44-229ENST00000528672 KCNC4Q03721 635 aa6.71□□□□□ -1.34
CD44-229ENST00000528672 NECTIN2Q92692 538 aa6.71□□□□□ -1.34
CD44-229ENST00000528672 RBM46Q8TBY0 533 aaKnown RBP6.7□□□□□ -1.34
CD44-229ENST00000528672 ZFRQ96KR1 1074 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms