RNA–Protein interactions for RNA: ENST00000528441.1

CMTM1-210, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 979 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-210ENST00000528441 LMTK3Q96Q04 1460 aa14.04□□□□□ -0.16
CMTM1-210ENST00000528441 PTPN23Q9H3S7 1636 aa14.04□□□□□ -0.16
CMTM1-210ENST00000528441 FAM50AQ14320 339 aaKnown RBP14.03□□□□□ -0.16
CMTM1-210ENST00000528441 PLXNC1O60486 1568 aa14.02□□□□□ -0.16
CMTM1-210ENST00000528441 DHX29Q7Z478 1369 aaKnown RBP14.01□□□□□ -0.17
CMTM1-210ENST00000528441 MROH2AA6NES4 1674 aa13.99□□□□□ -0.17
CMTM1-210ENST00000528441 PPARGC1BQ86YN6 1023 aaKnown RBP13.99□□□□□ -0.17
CMTM1-210ENST00000528441 FGD6Q6ZV73 1430 aa13.98□□□□□ -0.17
CMTM1-210ENST00000528441 ZMYM3Q14202 1370 aa13.98□□□□□ -0.17
CMTM1-210ENST00000528441 WASHC2CQ9Y4E1 1318 aa13.98□□□□□ -0.17
CMTM1-210ENST00000528441 SETD1BQ9UPS6 1966 aaKnown RBP13.98□□□□□ -0.17
CMTM1-210ENST00000528441 CHIC2Q9UKJ5 165 aa13.97□□□□□ -0.17
CMTM1-210ENST00000528441 MAST1Q9Y2H9 1570 aa13.96□□□□□ -0.17
CMTM1-210ENST00000528441 CROCC2H7BZ55 1655 aa13.96□□□□□ -0.17
CMTM1-210ENST00000528441 RRP7BPQ9NSQ0 103 aa13.96□□□□□ -0.17
CMTM1-210ENST00000528441 KDM5DQ9BY66 1539 aa13.95□□□□□ -0.18
CMTM1-210ENST00000528441 DAPK1P53355 1430 aa13.94□□□□□ -0.18
CMTM1-210ENST00000528441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.94□□□□□ -0.18
CMTM1-210ENST00000528441 KIF15Q9NS87 1388 aa13.94□□□□□ -0.18
CMTM1-210ENST00000528441 DNMT1P26358 1616 aaKnown RBP13.93□□□□□ -0.18
CMTM1-210ENST00000528441 DUOX2Q9NRD8 1548 aa13.92□□□□□ -0.18
CMTM1-210ENST00000528441 ITGAEP38570 1179 aa13.92□□□□□ -0.18
CMTM1-210ENST00000528441 ANKRD30AQ9BXX3 1397 aa13.92□□□□□ -0.18
CMTM1-210ENST00000528441 SHANK2Q9UPX8 1470 aa13.92□□□□□ -0.18
CMTM1-210ENST00000528441 ABCC5O15440 1437 aa13.91□□□□□ -0.18
CMTM1-210ENST00000528441 NPATQ14207 1427 aa13.91□□□□□ -0.18
CMTM1-210ENST00000528441 TCOF1Q13428 1488 aaKnown RBP13.91□□□□□ -0.18
CMTM1-210ENST00000528441 MYO3AQ8NEV4 1616 aa13.9□□□□□ -0.18
CMTM1-210ENST00000528441 EIF2AK4Q9P2K8 1649 aaKnown RBP13.9□□□□□ -0.18
CMTM1-210ENST00000528441 KANK1Q14678 1352 aa13.89□□□□□ -0.19
CMTM1-210ENST00000528441 TNRQ92752 1358 aa13.88□□□□□ -0.19
CMTM1-210ENST00000528441 CEP152O94986 1710 aa13.88□□□□□ -0.19
CMTM1-210ENST00000528441 FAM135AQ9P2D6 1515 aa13.88□□□□□ -0.19
CMTM1-210ENST00000528441 PTPRKQ15262 1439 aa13.88□□□□□ -0.19
CMTM1-210ENST00000528441 ZC3H13Q5T200 1668 aaKnown RBP13.88□□□□□ -0.19
CMTM1-210ENST00000528441 CAMSAP1Q5T5Y3 1602 aa13.87□□□□□ -0.19
CMTM1-210ENST00000528441 ERBINQ96RT1 1412 aa13.87□□□□□ -0.19
CMTM1-210ENST00000528441 CEP170BQ9Y4F5 1589 aaPredicted RBP13.87□□□□□ -0.19
CMTM1-210ENST00000528441 RNF17Q9BXT8 1623 aaKnown RBP13.86□□□□□ -0.19
CMTM1-210ENST00000528441 CFAP65Q6ZU64 1925 aaKnown RBP13.86□□□□□ -0.19
CMTM1-210ENST00000528441 FBXO31Q5XUX0 539 aaPredicted RBP13.86□□□□□ -0.19
CMTM1-210ENST00000528441 ILDR1Q86SU0 546 aaPredicted RBP13.86□□□□□ -0.19
CMTM1-210ENST00000528441 PZPP20742 1482 aa13.86□□□□□ -0.19
CMTM1-210ENST00000528441 ZNF142P52746 1687 aaPredicted RBP13.84□□□□□ -0.19
CMTM1-210ENST00000528441 ABCC3O15438 1527 aa13.84□□□□□ -0.19
CMTM1-210ENST00000528441 NCKAP5LQ9HCH0 1330 aa13.83□□□□□ -0.2
CMTM1-210ENST00000528441 STRCQ7RTU9 1775 aa13.83□□□□□ -0.2
CMTM1-210ENST00000528441 A2ML1A8K2U0 1454 aa13.82□□□□□ -0.2
CMTM1-210ENST00000528441 STAG3Q9UJ98 1225 aa13.82□□□□□ -0.2
CMTM1-210ENST00000528441 NCOA1Q15788 1441 aa13.81□□□□□ -0.2
CMTM1-210ENST00000528441 PRDM15P57071 1507 aaPredicted RBP13.8□□□□□ -0.2
CMTM1-210ENST00000528441 PKD2Q13563 968 aa13.79□□□□□ -0.2
CMTM1-210ENST00000528441 ANKRD50Q9ULJ7 1429 aa13.79□□□□□ -0.2
CMTM1-210ENST00000528441 MROH1Q8NDA8 1641 aa13.79□□□□□ -0.2
CMTM1-210ENST00000528441 THEMISQ8N1K5 641 aaPredicted RBP13.78□□□□□ -0.2
CMTM1-210ENST00000528441 CERKQ8TCT0 537 aa13.78□□□□□ -0.2
CMTM1-210ENST00000528441 FBXO41Q8TF61 875 aa13.78□□□□□ -0.2
CMTM1-210ENST00000528441 PTPRTO14522 1441 aa13.78□□□□□ -0.2
CMTM1-210ENST00000528441 ADGRL2O95490 1459 aa13.78□□□□□ -0.2
CMTM1-210ENST00000528441 ERVK-7P63135 1459 aa13.78□□□□□ -0.2
CMTM1-210ENST00000528441 NLRP1Q9C000 1473 aa13.78□□□□□ -0.2
CMTM1-210ENST00000528441 UGGT1Q9NYU2 1555 aa13.78□□□□□ -0.2
CMTM1-210ENST00000528441 PLA2R1Q13018 1463 aa13.77□□□□□ -0.21
CMTM1-210ENST00000528441 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.76□□□□□ -0.21
CMTM1-210ENST00000528441 ANKLE2Q86XL3 938 aa13.76□□□□□ -0.21
CMTM1-210ENST00000528441 POLR1AO95602 1720 aaPredicted RBP13.76□□□□□ -0.21
CMTM1-210ENST00000528441 DEPDC5O75140 1603 aa13.75□□□□□ -0.21
CMTM1-210ENST00000528441 SPATA31D1Q6ZQQ2 1576 aa13.75□□□□□ -0.21
CMTM1-210ENST00000528441 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
CMTM1-210ENST00000528441 CHGAP10645 457 aaKnown RBP13.71□□□□□ -0.21
CMTM1-210ENST00000528441 BCANQ96GW7 911 aa13.71□□□□□ -0.21
CMTM1-210ENST00000528441 ROCK1Q13464 1354 aa13.71□□□□□ -0.22
CMTM1-210ENST00000528441 ZNF335Q9H4Z2 1342 aaPredicted RBP13.7□□□□□ -0.22
CMTM1-210ENST00000528441 RNF39Q9H2S5 420 aa13.7□□□□□ -0.22
CMTM1-210ENST00000528441 EID1Q9Y6B2 187 aa13.7□□□□□ -0.22
CMTM1-210ENST00000528441 ARHGAP31Q2M1Z3 1444 aa13.7□□□□□ -0.22
CMTM1-210ENST00000528441 EFCAB6Q5THR3 1501 aa13.69□□□□□ -0.22
CMTM1-210ENST00000528441 NPHP4O75161 1426 aaPredicted RBP13.68□□□□□ -0.22
CMTM1-210ENST00000528441 LMTK2Q8IWU2 1503 aa13.68□□□□□ -0.22
CMTM1-210ENST00000528441 NUP155O75694 1391 aa13.68□□□□□ -0.22
CMTM1-210ENST00000528441 PIK3C2BO00750 1634 aa13.68□□□□□ -0.22
CMTM1-210ENST00000528441 UBR1Q8IWV7 1749 aa13.67□□□□□ -0.22
CMTM1-210ENST00000528441 UNC13BO14795 1591 aa13.67□□□□□ -0.22
CMTM1-210ENST00000528441 TET3O43151 1660 aa13.67□□□□□ -0.22
CMTM1-210ENST00000528441 IQGAP1P46940 1657 aa13.66□□□□□ -0.22
CMTM1-210ENST00000528441 GCC2Q8IWJ2 1684 aa13.66□□□□□ -0.22
CMTM1-210ENST00000528441 RRBP1Q9P2E9 1410 aaKnown RBP13.66□□□□□ -0.22
CMTM1-210ENST00000528441 PPP1R15AO75807 674 aaPredicted RBP13.66□□□□□ -0.22
CMTM1-210ENST00000528441 TXNDC2Q86VQ3 553 aa13.66□□□□□ -0.22
CMTM1-210ENST00000528441 TRIM52Q96A61 297 aa13.66□□□□□ -0.22
CMTM1-210ENST00000528441 VWDEQ8N2E2 1590 aa13.66□□□□□ -0.22
CMTM1-210ENST00000528441 NEURL4Q96JN8 1562 aa13.65□□□□□ -0.22
CMTM1-210ENST00000528441 SCAF11Q99590 1463 aaKnown RBP13.64□□□□□ -0.23
CMTM1-210ENST00000528441 RPRD2Q5VT52 1461 aaKnown RBP13.63□□□□□ -0.23
CMTM1-210ENST00000528441 UBAP1LF5GYI3 381 aa13.63□□□□□ -0.23
CMTM1-210ENST00000528441 IDI1Q13907 227 aa13.63□□□□□ -0.23
CMTM1-210ENST00000528441 SLC52A1Q9NWF4 448 aa13.63□□□□□ -0.23
CMTM1-210ENST00000528441 SYNMO15061 1565 aa13.62□□□□□ -0.23
CMTM1-210ENST00000528441 IQGAP3Q86VI3 1631 aa13.62□□□□□ -0.23
CMTM1-210ENST00000528441 LTBP4Q8N2S1 1624 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms