RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 POTEB3A0JP26 581 aa13.35□□□□□ -0.27
PCF11-202ENST00000528336 POTEBQ6S5H4 581 aa13.35□□□□□ -0.27
PCF11-202ENST00000528336 HS3ST6Q96QI5 342 aa13.35□□□□□ -0.27
PCF11-202ENST00000528336 BCL2L12Q9HB09 334 aa13.35□□□□□ -0.27
PCF11-202ENST00000528336 FCHSD2O94868 740 aa13.32□□□□□ -0.28
PCF11-202ENST00000528336 PTPREP23469 700 aa13.32□□□□□ -0.28
PCF11-202ENST00000528336 KCNK17Q96T54 332 aa13.32□□□□□ -0.28
PCF11-202ENST00000528336 NPDC1Q9NQX5 325 aaPredicted RBP13.31□□□□□ -0.28
PCF11-202ENST00000528336 PTGDRQ13258 359 aa13.3□□□□□ -0.28
PCF11-202ENST00000528336 AXIN2Q9Y2T1 843 aa13.3□□□□□ -0.28
PCF11-202ENST00000528336 GPR37O15354 613 aa13.29□□□□□ -0.28
PCF11-202ENST00000528336 COL9A1P20849 921 aa13.29□□□□□ -0.28
PCF11-202ENST00000528336 PSEN2P49810 448 aa13.28□□□□□ -0.28
PCF11-202ENST00000528336 ZNF687Q8N1G0 1237 aa13.28□□□□□ -0.28
PCF11-202ENST00000528336 KCNH8Q96L42 1107 aa13.27□□□□□ -0.29
PCF11-202ENST00000528336 ZMYND10O75800 440 aa13.26□□□□□ -0.29
PCF11-202ENST00000528336 HIC1Q14526 733 aa13.26□□□□□ -0.29
PCF11-202ENST00000528336 POTEEQ6S8J3 1075 aa13.26□□□□□ -0.29
PCF11-202ENST00000528336 KRI1Q8N9T8 703 aaKnown RBP13.26□□□□□ -0.29
PCF11-202ENST00000528336 ARHGAP33O14559 1287 aa13.25□□□□□ -0.29
PCF11-202ENST00000528336 GNPATO15228 680 aa13.25□□□□□ -0.29
PCF11-202ENST00000528336 FECHP22830 423 aa13.24□□□□□ -0.29
PCF11-202ENST00000528336 BARGINQ6ZT62 677 aa13.24□□□□□ -0.29
PCF11-202ENST00000528336 CERKQ8TCT0 537 aa13.24□□□□□ -0.29
PCF11-202ENST00000528336 PPP1R3GB7ZBB8 358 aa13.23□□□□□ -0.29
PCF11-202ENST00000528336 POTEGQ6S5H5 508 aa13.21□□□□□ -0.29
PCF11-202ENST00000528336 PBX2P40425 430 aa13.2□□□□□ -0.3
PCF11-202ENST00000528336 PRSS12P56730 875 aa13.2□□□□□ -0.3
PCF11-202ENST00000528336 DMRTA1Q5VZB9 504 aa13.2□□□□□ -0.3
PCF11-202ENST00000528336 CDCA7LQ96GN5 454 aa13.2□□□□□ -0.3
PCF11-202ENST00000528336 PADI6Q6TGC4 694 aa13.19□□□□□ -0.3
PCF11-202ENST00000528336 SLC24A3Q9HC58 644 aa13.19□□□□□ -0.3
PCF11-202ENST00000528336 POTEMA6NI47 508 aa13.18□□□□□ -0.3
PCF11-202ENST00000528336 PROX2Q3B8N5 592 aa13.17□□□□□ -0.3
PCF11-202ENST00000528336 ZBED2Q9BTP6 218 aa13.16□□□□□ -0.3
PCF11-202ENST00000528336 MAP2K5Q13163 448 aa13.14□□□□□ -0.31
PCF11-202ENST00000528336 FAM161AQ3B820 660 aa13.14□□□□□ -0.31
PCF11-202ENST00000528336 FAM198AQ9UFP1 575 aa13.14□□□□□ -0.31
PCF11-202ENST00000528336 TSKSQ9UJT2 592 aa13.14□□□□□ -0.31
PCF11-202ENST00000528336 MINK1Q8N4C8 1332 aaPredicted RBP13.13□□□□□ -0.31
PCF11-202ENST00000528336 TRIM6-TRIM34B2RNG4 842 aa13.12□□□□□ -0.31
PCF11-202ENST00000528336 IRF6O14896 467 aa13.12□□□□□ -0.31
PCF11-202ENST00000528336 RBM27Q9P2N5 1060 aaKnown RBP13.12□□□□□ -0.31
PCF11-202ENST00000528336 LSM11P83369 360 aaKnown RBP eCLIP13.11□□□□□ -0.31
PCF11-202ENST00000528336 ANKRD13DQ6ZTN6 518 aa13.11□□□□□ -0.31
PCF11-202ENST00000528336 TTC13Q8NBP0 860 aa13.11□□□□□ -0.31
PCF11-202ENST00000528336 PACS2Q86VP3 889 aa13.1□□□□□ -0.31
PCF11-202ENST00000528336 AK7Q96M32 723 aa13.1□□□□□ -0.31
PCF11-202ENST00000528336 KIAA1468Q9P260 1216 aa13.1□□□□□ -0.31
PCF11-202ENST00000528336 CDAN1Q8IWY9 1227 aa13.09□□□□□ -0.31
PCF11-202ENST00000528336 CCDC102AQ96A19 550 aa13.09□□□□□ -0.31
PCF11-202ENST00000528336 VPS9D1Q9Y2B5 631 aa13.09□□□□□ -0.31
PCF11-202ENST00000528336 C3orf80F5H4A9 247 aa13.07□□□□□ -0.32
PCF11-202ENST00000528336 SLC4A5Q9BY07 1137 aa13.07□□□□□ -0.32
PCF11-202ENST00000528336 ADGRG1Q9Y653 693 aa13.07□□□□□ -0.32
PCF11-202ENST00000528336 SMAPO00193 183 aa13.06□□□□□ -0.32
PCF11-202ENST00000528336 NUDT18Q6ZVK8 323 aa13.06□□□□□ -0.32
PCF11-202ENST00000528336 PNMA3Q9UL41 463 aa13.06□□□□□ -0.32
PCF11-202ENST00000528336 ONECUT3O60422 494 aaPredicted RBP13.05□□□□□ -0.32
PCF11-202ENST00000528336 TATDN2Q93075 761 aa13.05□□□□□ -0.32
PCF11-202ENST00000528336 KRTAP3-3Q9BYR6 98 aa13.05□□□□□ -0.32
PCF11-202ENST00000528336 KRTAP3-2Q9BYR7 98 aa13.05□□□□□ -0.32
PCF11-202ENST00000528336 NBPF26B4DH59 902 aa13.04□□□□□ -0.32
PCF11-202ENST00000528336 OATP04181 439 aa13.04□□□□□ -0.32
PCF11-202ENST00000528336 ADGRD1Q6QNK2 874 aa13.04□□□□□ -0.32
PCF11-202ENST00000528336 RABGEF1Q9UJ41 708 aa13.04□□□□□ -0.32
PCF11-202ENST00000528336 TK2O00142 265 aa13.03□□□□□ -0.32
PCF11-202ENST00000528336 TRIM66O15016 1216 aa13.03□□□□□ -0.32
PCF11-202ENST00000528336 RBM46Q8TBY0 533 aaKnown RBP13.03□□□□□ -0.32
PCF11-202ENST00000528336 SEPT9Q9UHD8 586 aaPredicted RBP13.02□□□□□ -0.33
PCF11-202ENST00000528336 METTL3Q86U44 580 aaKnown RBP13.01□□□□□ -0.33
PCF11-202ENST00000528336 PXYLP1Q8TE99 480 aa13□□□□□ -0.33
PCF11-202ENST00000528336 NLRP7Q8WX94 980 aa13□□□□□ -0.33
PCF11-202ENST00000528336 PHOX2BQ99453 314 aa13□□□□□ -0.33
PCF11-202ENST00000528336 EYA1Q99502 592 aa13□□□□□ -0.33
PCF11-202ENST00000528336 STAC3Q96MF2 364 aa12.99□□□□□ -0.33
PCF11-202ENST00000528336 NBPF3Q9H094 633 aa12.96□□□□□ -0.33
PCF11-202ENST00000528336 RCCD1A6NED2 376 aa12.95□□□□□ -0.34
PCF11-202ENST00000528336 BHMG1C9JSJ3 638 aaPredicted RBP12.95□□□□□ -0.34
PCF11-202ENST00000528336 HRO43593 1189 aa12.95□□□□□ -0.34
PCF11-202ENST00000528336 PDE4DQ08499 809 aa12.95□□□□□ -0.34
PCF11-202ENST00000528336 MRPL50Q8N5N7 158 aaKnown RBP12.95□□□□□ -0.34
PCF11-202ENST00000528336 MDM2Q00987 491 aaPredicted RBP12.94□□□□□ -0.34
PCF11-202ENST00000528336 TTLL12Q14166 644 aaPredicted RBP12.92□□□□□ -0.34
PCF11-202ENST00000528336 NEUROD2Q15784 382 aa12.92□□□□□ -0.34
PCF11-202ENST00000528336 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.91□□□□□ -0.34
PCF11-202ENST00000528336 DNAJB2P25686 324 aa12.91□□□□□ -0.34
PCF11-202ENST00000528336 AMHR2Q16671 573 aa12.91□□□□□ -0.34
PCF11-202ENST00000528336 FAM98CQ17RN3 349 aaKnown RBP12.91□□□□□ -0.34
PCF11-202ENST00000528336 LAPTM4BQ86VI4 370 aa12.9□□□□□ -0.34
PCF11-202ENST00000528336 GOLGA8CPA6NN73 597 aa12.89□□□□□ -0.35
PCF11-202ENST00000528336 BRPF1P55201 1214 aaPredicted RBP12.89□□□□□ -0.35
PCF11-202ENST00000528336 GPBP1L1Q9HC44 474 aaPredicted RBP12.89□□□□□ -0.35
PCF11-202ENST00000528336 REPIN1Q9BWE0 567 aaKnown RBP12.88□□□□□ -0.35
PCF11-202ENST00000528336 CLCN1P35523 988 aa12.87□□□□□ -0.35
PCF11-202ENST00000528336 HDGFP51858 240 aaKnown RBP12.87□□□□□ -0.35
PCF11-202ENST00000528336 PARP9Q8IXQ6 854 aa12.87□□□□□ -0.35
PCF11-202ENST00000528336 ZFRQ96KR1 1074 aaKnown RBP12.87□□□□□ -0.35
PCF11-202ENST00000528336 TMEM134Q9H6X4 195 aa12.87□□□□□ -0.35
PCF11-202ENST00000528336 SWT1Q5T5J6 900 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms