RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 GLI2P10070 1586 aa22.91■■□□□ 1.26
SNRNP35-204ENST00000527158 NBPF8Q3BBV2 869 aa22.9■■□□□ 1.26
SNRNP35-204ENST00000527158 CCDC144AA2RUR9 1427 aa22.89■■□□□ 1.26
SNRNP35-204ENST00000527158 MAP3K4Q9Y6R4 1608 aa22.89■■□□□ 1.26
SNRNP35-204ENST00000527158 KIF3BO15066 747 aa22.89■■□□□ 1.25
SNRNP35-204ENST00000527158 KANK1Q14678 1352 aa22.88■■□□□ 1.25
SNRNP35-204ENST00000527158 KDM5CP41229 1560 aa22.88■■□□□ 1.25
SNRNP35-204ENST00000527158 KIDINS220Q9ULH0 1771 aa22.88■■□□□ 1.25
SNRNP35-204ENST00000527158 EIF4G2P78344 907 aaKnown RBP eCLIP22.88■■□□□ 1.25
SNRNP35-204ENST00000527158 MLH3Q9UHC1 1453 aa22.87■■□□□ 1.25
SNRNP35-204ENST00000527158 EIF2AK4Q9P2K8 1649 aaKnown RBP22.86■■□□□ 1.25
SNRNP35-204ENST00000527158 FAM69CQ0P6D2 419 aa22.86■■□□□ 1.25
SNRNP35-204ENST00000527158 DEPDC5O75140 1603 aa22.85■■□□□ 1.25
SNRNP35-204ENST00000527158 HSPA5P11021 654 aaKnown RBP22.84■■□□□ 1.25
SNRNP35-204ENST00000527158 PLA2R1Q13018 1463 aa22.84■■□□□ 1.25
SNRNP35-204ENST00000527158 ATP10AO60312 1499 aa22.83■■□□□ 1.25
SNRNP35-204ENST00000527158 A2MP01023 1474 aa22.83■■□□□ 1.25
SNRNP35-204ENST00000527158 DDX10Q13206 875 aaKnown RBP22.83■■□□□ 1.24
SNRNP35-204ENST00000527158 GTF3C3Q9Y5Q9 886 aa22.83■■□□□ 1.24
SNRNP35-204ENST00000527158 HECW2Q9P2P5 1572 aa22.83■■□□□ 1.24
SNRNP35-204ENST00000527158 RAPGEF3O95398 923 aa22.82■■□□□ 1.24
SNRNP35-204ENST00000527158 ZNF326Q5BKZ1 582 aaKnown RBP22.81■■□□□ 1.24
SNRNP35-204ENST00000527158 DIP2BQ9P265 1576 aa22.8■■□□□ 1.24
SNRNP35-204ENST00000527158 UHRF1BP1Q6BDS2 1440 aa22.8■■□□□ 1.24
SNRNP35-204ENST00000527158 DCAF11Q8TEB1 546 aa22.79■■□□□ 1.24
SNRNP35-204ENST00000527158 VWDEQ8N2E2 1590 aa22.78■■□□□ 1.24
SNRNP35-204ENST00000527158 PRDM15P57071 1507 aaPredicted RBP22.78■■□□□ 1.24
SNRNP35-204ENST00000527158 KDM2AQ9Y2K7 1162 aa22.77■■□□□ 1.24
SNRNP35-204ENST00000527158 TET3O43151 1660 aa22.76■■□□□ 1.23
SNRNP35-204ENST00000527158 E9PCH4 1651 aa22.75■■□□□ 1.23
SNRNP35-204ENST00000527158 RGL3Q3MIN7 710 aa22.74■■□□□ 1.23
SNRNP35-204ENST00000527158 MROH1Q8NDA8 1641 aa22.73■■□□□ 1.23
SNRNP35-204ENST00000527158 PTPRTO14522 1441 aa22.72■■□□□ 1.23
SNRNP35-204ENST00000527158 RICTORQ6R327 1708 aa22.71■■□□□ 1.23
SNRNP35-204ENST00000527158 ABCA6Q8N139 1617 aa22.71■■□□□ 1.23
SNRNP35-204ENST00000527158 FRMPD1Q5SYB0 1578 aa22.71■■□□□ 1.23
SNRNP35-204ENST00000527158 RNF17Q9BXT8 1623 aaKnown RBP22.7■■□□□ 1.22
SNRNP35-204ENST00000527158 RALGAPBQ86X10 1494 aa22.7■■□□□ 1.22
SNRNP35-204ENST00000527158 TRPM2O94759 1503 aa22.7■■□□□ 1.22
SNRNP35-204ENST00000527158 SPATA31E1Q6ZUB1 1445 aa22.7■■□□□ 1.22
SNRNP35-204ENST00000527158 GGT6Q6P531 493 aa22.68■■□□□ 1.22
SNRNP35-204ENST00000527158 LMTK2Q8IWU2 1503 aa22.67■■□□□ 1.22
SNRNP35-204ENST00000527158 SPHKAPQ2M3C7 1700 aa22.67■■□□□ 1.22
SNRNP35-204ENST00000527158 WASHC2AQ641Q2 1341 aa22.67■■□□□ 1.22
SNRNP35-204ENST00000527158 DIP2CQ9Y2E4 1556 aa22.66■■□□□ 1.22
SNRNP35-204ENST00000527158 CARD11Q9BXL7 1154 aa22.66■■□□□ 1.22
SNRNP35-204ENST00000527158 BCORL1Q5H9F3 1711 aa22.66■■□□□ 1.22
SNRNP35-204ENST00000527158 USP47Q96K76 1375 aa22.66■■□□□ 1.22
SNRNP35-204ENST00000527158 EFCAB6Q5THR3 1501 aa22.65■■□□□ 1.22
SNRNP35-204ENST00000527158 PRAG1Q86YV5 1406 aa22.64■■□□□ 1.22
SNRNP35-204ENST00000527158 TSPOAP1O95153 1857 aa22.64■■□□□ 1.22
SNRNP35-204ENST00000527158 WASHC2CQ9Y4E1 1318 aa22.62■■□□□ 1.21
SNRNP35-204ENST00000527158 PPRC1Q5VV67 1664 aaKnown RBP22.62■■□□□ 1.21
SNRNP35-204ENST00000527158 ROCK2O75116 1388 aaKnown RBP22.61■■□□□ 1.21
SNRNP35-204ENST00000527158 YEATS2Q9ULM3 1422 aa22.61■■□□□ 1.21
SNRNP35-204ENST00000527158 ANP32CO43423 234 aa22.61■■□□□ 1.21
SNRNP35-204ENST00000527158 YTHDC1Q96MU7 727 aaKnown RBP22.61■■□□□ 1.21
SNRNP35-204ENST00000527158 ZMYM4Q5VZL5 1548 aa22.61■■□□□ 1.21
SNRNP35-204ENST00000527158 STAC3Q96MF2 364 aa22.6■■□□□ 1.21
SNRNP35-204ENST00000527158 CCDC7Q96M83 1385 aa22.6■■□□□ 1.21
SNRNP35-204ENST00000527158 CLTCL1P53675 1640 aa22.59■■□□□ 1.21
SNRNP35-204ENST00000527158 CEP152O94986 1710 aa22.59■■□□□ 1.21
SNRNP35-204ENST00000527158 C11orf95C9JLR9 678 aaPredicted RBP22.59■■□□□ 1.21
SNRNP35-204ENST00000527158 TRPM1Q7Z4N2 1603 aa22.56■■□□□ 1.2
SNRNP35-204ENST00000527158 ABCC3O15438 1527 aa22.55■■□□□ 1.2
SNRNP35-204ENST00000527158 KIF13AQ9H1H9 1805 aa22.55■■□□□ 1.2
SNRNP35-204ENST00000527158 KIF7Q2M1P5 1343 aa22.54■■□□□ 1.2
SNRNP35-204ENST00000527158 NPATQ14207 1427 aa22.54■■□□□ 1.2
SNRNP35-204ENST00000527158 NEURL4Q96JN8 1562 aa22.53■■□□□ 1.2
SNRNP35-204ENST00000527158 ARID4BQ4LE39 1312 aaPredicted RBP22.52■■□□□ 1.2
SNRNP35-204ENST00000527158 GPRASP1Q5JY77 1395 aa22.51■■□□□ 1.19
SNRNP35-204ENST00000527158 NBPF1Q3BBV0 1214 aa22.51■■□□□ 1.19
SNRNP35-204ENST00000527158 CNTLNQ9NXG0 1405 aa22.51■■□□□ 1.19
SNRNP35-204ENST00000527158 POLR1AO95602 1720 aaPredicted RBP22.5■■□□□ 1.19
SNRNP35-204ENST00000527158 ST20-MTHFSA0A0A6YYL1 179 aa22.5■■□□□ 1.19
SNRNP35-204ENST00000527158 UGGT1Q9NYU2 1555 aa22.48■■□□□ 1.19
SNRNP35-204ENST00000527158 CCER2I3L3R5 266 aa22.48■■□□□ 1.19
SNRNP35-204ENST00000527158 CAMSAP1Q5T5Y3 1602 aa22.48■■□□□ 1.19
SNRNP35-204ENST00000527158 LAMC1P11047 1609 aa22.47■■□□□ 1.19
SNRNP35-204ENST00000527158 ZC3H13Q5T200 1668 aaKnown RBP22.47■■□□□ 1.19
SNRNP35-204ENST00000527158 KIF1BO60333 1816 aa22.46■■□□□ 1.19
SNRNP35-204ENST00000527158 ARHGAP31Q2M1Z3 1444 aa22.45■■□□□ 1.19
SNRNP35-204ENST00000527158 REREQ9P2R6 1566 aa22.45■■□□□ 1.18
SNRNP35-204ENST00000527158 MADDQ8WXG6 1647 aa22.45■■□□□ 1.18
SNRNP35-204ENST00000527158 CHGAP10645 457 aaKnown RBP22.43■■□□□ 1.18
SNRNP35-204ENST00000527158 POLR3GLQ9BT43 218 aa22.43■■□□□ 1.18
SNRNP35-204ENST00000527158 COL17A1Q9UMD9 1497 aaPredicted RBP22.43■■□□□ 1.18
SNRNP35-204ENST00000527158 AGLP35573 1532 aa22.42■■□□□ 1.18
SNRNP35-204ENST00000527158 NOS1P29475 1434 aa22.42■■□□□ 1.18
SNRNP35-204ENST00000527158 PPP6R1Q9UPN7 881 aa22.42■■□□□ 1.18
SNRNP35-204ENST00000527158 MYOM2P54296 1465 aa22.4■■□□□ 1.18
SNRNP35-204ENST00000527158 ADGRB3O60242 1522 aa22.39■■□□□ 1.17
SNRNP35-204ENST00000527158 CFAP65Q6ZU64 1925 aaKnown RBP22.39■■□□□ 1.17
SNRNP35-204ENST00000527158 RPGRIP1LQ68CZ1 1315 aa22.36■■□□□ 1.17
SNRNP35-204ENST00000527158 MROH2AA6NES4 1674 aa22.36■■□□□ 1.17
SNRNP35-204ENST00000527158 ARHGEF40Q8TER5 1519 aa22.35■■□□□ 1.17
SNRNP35-204ENST00000527158 SLC52A1Q9NWF4 448 aa22.35■■□□□ 1.17
SNRNP35-204ENST00000527158 SIGLEC1Q9BZZ2 1709 aa22.35■■□□□ 1.17
SNRNP35-204ENST00000527158 ADGRF5Q8IZF2 1346 aa22.34■■□□□ 1.17
SNRNP35-204ENST00000527158 SYNMO15061 1565 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms