RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 TCOF1Q13428 1488 aaKnown RBP25.79■■□□□ 1.72
HIF3A-208ENST00000524533 MAST1Q9Y2H9 1570 aa25.78■■□□□ 1.72
HIF3A-208ENST00000524533 NCKAP5LQ9HCH0 1330 aa25.78■■□□□ 1.72
HIF3A-208ENST00000524533 TSPY4P0CV99 314 aa25.77■■□□□ 1.72
HIF3A-208ENST00000524533 TSPY10P0CW01 314 aa25.77■■□□□ 1.72
HIF3A-208ENST00000524533 PZPP20742 1482 aa25.77■■□□□ 1.72
HIF3A-208ENST00000524533 IQSEC2Q5JU85 1478 aa25.77■■□□□ 1.72
HIF3A-208ENST00000524533 DNMT1P26358 1616 aaKnown RBP25.77■■□□□ 1.72
HIF3A-208ENST00000524533 MYOM3Q5VTT5 1437 aa25.74■■□□□ 1.71
HIF3A-208ENST00000524533 PKD2Q13563 968 aa25.74■■□□□ 1.71
HIF3A-208ENST00000524533 RNF17Q9BXT8 1623 aaKnown RBP25.74■■□□□ 1.71
HIF3A-208ENST00000524533 TNRQ92752 1358 aa25.73■■□□□ 1.71
HIF3A-208ENST00000524533 KANK4Q5T7N3 995 aaPredicted RBP25.73■■□□□ 1.71
HIF3A-208ENST00000524533 MIA2Q96PC5 1412 aa25.72■■□□□ 1.71
HIF3A-208ENST00000524533 POLR1AO95602 1720 aaPredicted RBP25.72■■□□□ 1.71
HIF3A-208ENST00000524533 EIF2AK4Q9P2K8 1649 aaKnown RBP25.72■■□□□ 1.71
HIF3A-208ENST00000524533 WASHC2CQ9Y4E1 1318 aa25.71■■□□□ 1.71
HIF3A-208ENST00000524533 ZC3H13Q5T200 1668 aaKnown RBP25.71■■□□□ 1.71
HIF3A-208ENST00000524533 FBXO31Q5XUX0 539 aaPredicted RBP25.68■■□□□ 1.7
HIF3A-208ENST00000524533 ZNF335Q9H4Z2 1342 aaPredicted RBP25.67■■□□□ 1.7
HIF3A-208ENST00000524533 CROCC2H7BZ55 1655 aa25.65■■□□□ 1.7
HIF3A-208ENST00000524533 ABCC3O15438 1527 aa25.65■■□□□ 1.7
HIF3A-208ENST00000524533 NEURL4Q96JN8 1562 aa25.64■■□□□ 1.69
HIF3A-208ENST00000524533 MROH1Q8NDA8 1641 aa25.63■■□□□ 1.69
HIF3A-208ENST00000524533 NLRP1Q9C000 1473 aa25.63■■□□□ 1.69
HIF3A-208ENST00000524533 PTPN23Q9H3S7 1636 aa25.61■■□□□ 1.69
HIF3A-208ENST00000524533 DUOX2Q9NRD8 1548 aa25.61■■□□□ 1.69
HIF3A-208ENST00000524533 UGGT1Q9NYU2 1555 aa25.61■■□□□ 1.69
HIF3A-208ENST00000524533 CEP152O94986 1710 aa25.6■■□□□ 1.69
HIF3A-208ENST00000524533 SPATA31D1Q6ZQQ2 1576 aa25.59■■□□□ 1.69
HIF3A-208ENST00000524533 SHANK2Q9UPX8 1470 aa25.59■■□□□ 1.69
HIF3A-208ENST00000524533 APLP2Q06481 763 aa25.58■■□□□ 1.69
HIF3A-208ENST00000524533 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.56■■□□□ 1.68
HIF3A-208ENST00000524533 ERVK-7P63135 1459 aa25.54■■□□□ 1.68
HIF3A-208ENST00000524533 DEPDC5O75140 1603 aa25.54■■□□□ 1.68
HIF3A-208ENST00000524533 PRDM15P57071 1507 aaPredicted RBP25.53■■□□□ 1.68
HIF3A-208ENST00000524533 THEMISQ8N1K5 641 aaPredicted RBP25.53■■□□□ 1.68
HIF3A-208ENST00000524533 KIF15Q9NS87 1388 aa25.53■■□□□ 1.68
HIF3A-208ENST00000524533 ABCC5O15440 1437 aa25.53■■□□□ 1.68
HIF3A-208ENST00000524533 ERBINQ96RT1 1412 aa25.52■■□□□ 1.68
HIF3A-208ENST00000524533 ANKLE2Q86XL3 938 aa25.51■■□□□ 1.67
HIF3A-208ENST00000524533 DISP3Q9P2K9 1392 aa25.51■■□□□ 1.67
HIF3A-208ENST00000524533 FGD6Q6ZV73 1430 aa25.51■■□□□ 1.67
HIF3A-208ENST00000524533 CPS1P31327 1500 aa25.51■■□□□ 1.67
HIF3A-208ENST00000524533 UBAP1LF5GYI3 381 aa25.5■■□□□ 1.67
HIF3A-208ENST00000524533 DAPK1P53355 1430 aa25.5■■□□□ 1.67
HIF3A-208ENST00000524533 IQGAP1P46940 1657 aa25.49■■□□□ 1.67
HIF3A-208ENST00000524533 MED14O60244 1454 aa25.48■■□□□ 1.67
HIF3A-208ENST00000524533 NPHP4O75161 1426 aaPredicted RBP25.47■■□□□ 1.67
HIF3A-208ENST00000524533 VWDEQ8N2E2 1590 aa25.47■■□□□ 1.67
HIF3A-208ENST00000524533 UBR1Q8IWV7 1749 aa25.46■■□□□ 1.67
HIF3A-208ENST00000524533 CFAP65Q6ZU64 1925 aaKnown RBP25.46■■□□□ 1.67
HIF3A-208ENST00000524533 RRP7BPQ9NSQ0 103 aa25.44■■□□□ 1.66
HIF3A-208ENST00000524533 ARHGAP31Q2M1Z3 1444 aa25.42■■□□□ 1.66
HIF3A-208ENST00000524533 ANKRD30AQ9BXX3 1397 aa25.39■■□□□ 1.65
HIF3A-208ENST00000524533 KANK1Q14678 1352 aa25.38■■□□□ 1.65
HIF3A-208ENST00000524533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.36■■□□□ 1.65
HIF3A-208ENST00000524533 PIK3C2BO00750 1634 aa25.35■■□□□ 1.65
HIF3A-208ENST00000524533 CHIC2Q9UKJ5 165 aa25.35■■□□□ 1.65
HIF3A-208ENST00000524533 SYNMO15061 1565 aa25.35■■□□□ 1.65
HIF3A-208ENST00000524533 SCAF11Q99590 1463 aaKnown RBP25.34■■□□□ 1.65
HIF3A-208ENST00000524533 STRCP1A6NGW2 1772 aa25.34■■□□□ 1.65
HIF3A-208ENST00000524533 LMTK2Q8IWU2 1503 aa25.34■■□□□ 1.65
HIF3A-208ENST00000524533 SLIT1O75093 1534 aa25.33■■□□□ 1.65
HIF3A-208ENST00000524533 ADGRL2O95490 1459 aa25.33■■□□□ 1.65
HIF3A-208ENST00000524533 ARHGAP23Q9P227 1491 aa25.33■■□□□ 1.65
HIF3A-208ENST00000524533 SCAF1Q9H7N4 1312 aaKnown RBP25.33■■□□□ 1.64
HIF3A-208ENST00000524533 ILDR2Q71H61 639 aa25.32■■□□□ 1.64
HIF3A-208ENST00000524533 TOM1O60784 492 aa25.31■■□□□ 1.64
HIF3A-208ENST00000524533 KDM5AP29375 1690 aaKnown RBP25.29■■□□□ 1.64
HIF3A-208ENST00000524533 EFCAB6Q5THR3 1501 aa25.29■■□□□ 1.64
HIF3A-208ENST00000524533 PIP4K2BP78356 416 aa25.29■■□□□ 1.64
HIF3A-208ENST00000524533 LRRC7Q96NW7 1537 aa25.27■■□□□ 1.64
HIF3A-208ENST00000524533 FAM50AQ14320 339 aaKnown RBP25.26■■□□□ 1.63
HIF3A-208ENST00000524533 ALKQ9UM73 1620 aa25.26■■□□□ 1.63
HIF3A-208ENST00000524533 LTKP29376 864 aa25.23■■□□□ 1.63
HIF3A-208ENST00000524533 TXNDC2Q86VQ3 553 aa25.23■■□□□ 1.63
HIF3A-208ENST00000524533 HSPA1LP34931 641 aa25.22■■□□□ 1.63
HIF3A-208ENST00000524533 EID1Q9Y6B2 187 aa25.22■■□□□ 1.63
HIF3A-208ENST00000524533 TMEM2Q9UHN6 1383 aa25.21■■□□□ 1.63
HIF3A-208ENST00000524533 STAG3Q9UJ98 1225 aa25.21■■□□□ 1.63
HIF3A-208ENST00000524533 ANKRD50Q9ULJ7 1429 aa25.2■■□□□ 1.63
HIF3A-208ENST00000524533 ADGRB3O60242 1522 aa25.2■■□□□ 1.62
HIF3A-208ENST00000524533 NOS1P29475 1434 aa25.2■■□□□ 1.62
HIF3A-208ENST00000524533 SOCS7O14512 581 aa25.18■■□□□ 1.62
HIF3A-208ENST00000524533 TET3O43151 1660 aa25.17■■□□□ 1.62
HIF3A-208ENST00000524533 MED1Q15648 1581 aaPredicted RBP25.17■■□□□ 1.62
HIF3A-208ENST00000524533 IDI1Q13907 227 aa25.16■■□□□ 1.62
HIF3A-208ENST00000524533 RPRD2Q5VT52 1461 aaKnown RBP25.15■■□□□ 1.62
HIF3A-208ENST00000524533 XIRP1Q702N8 1843 aaKnown RBP25.15■■□□□ 1.62
HIF3A-208ENST00000524533 UNC13BO14795 1591 aa25.14■■□□□ 1.62
HIF3A-208ENST00000524533 GCC2Q8IWJ2 1684 aa25.14■■□□□ 1.62
HIF3A-208ENST00000524533 SLC52A1Q9NWF4 448 aa25.09■■□□□ 1.61
HIF3A-208ENST00000524533 MYO5BQ9ULV0 1848 aa25.08■■□□□ 1.61
HIF3A-208ENST00000524533 ROCK1Q13464 1354 aa25.05■■□□□ 1.6
HIF3A-208ENST00000524533 IQGAP3Q86VI3 1631 aa25.04■■□□□ 1.6
HIF3A-208ENST00000524533 E9PCH4 1651 aa25.04■■□□□ 1.6
HIF3A-208ENST00000524533 NWD1Q149M9 1564 aa25.04■■□□□ 1.6
HIF3A-208ENST00000524533 SENP3Q9H4L4 574 aaPredicted RBP25.03■■□□□ 1.6
HIF3A-208ENST00000524533 TMEM131LA2VDJ0 1609 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms