RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 PTPRKQ15262 1439 aa26.65■■□□□ 1.86
CCNC-213ENST00000523541 DUOX2Q9NRD8 1548 aa26.64■■□□□ 1.85
CCNC-213ENST00000523541 KDM5DQ9BY66 1539 aa26.62■■□□□ 1.85
CCNC-213ENST00000523541 FBXO41Q8TF61 875 aa26.62■■□□□ 1.85
CCNC-213ENST00000523541 STRCQ7RTU9 1775 aa26.61■■□□□ 1.85
CCNC-213ENST00000523541 DNMT1P26358 1616 aaKnown RBP26.61■■□□□ 1.85
CCNC-213ENST00000523541 KIF15Q9NS87 1388 aa26.6■■□□□ 1.85
CCNC-213ENST00000523541 MYO3AQ8NEV4 1616 aa26.6■■□□□ 1.85
CCNC-213ENST00000523541 EIF2AK4Q9P2K8 1649 aaKnown RBP26.6■■□□□ 1.85
CCNC-213ENST00000523541 ANKRD30AQ9BXX3 1397 aa26.59■■□□□ 1.85
CCNC-213ENST00000523541 RRP7BPQ9NSQ0 103 aa26.59■■□□□ 1.85
CCNC-213ENST00000523541 ERBINQ96RT1 1412 aa26.58■■□□□ 1.85
CCNC-213ENST00000523541 FAM50AQ14320 339 aaKnown RBP26.57■■□□□ 1.84
CCNC-213ENST00000523541 CAMSAP1Q5T5Y3 1602 aa26.57■■□□□ 1.84
CCNC-213ENST00000523541 RNF17Q9BXT8 1623 aaKnown RBP26.56■■□□□ 1.84
CCNC-213ENST00000523541 PZPP20742 1482 aa26.55■■□□□ 1.84
CCNC-213ENST00000523541 CEP170BQ9Y4F5 1589 aaPredicted RBP26.55■■□□□ 1.84
CCNC-213ENST00000523541 CROCC2H7BZ55 1655 aa26.55■■□□□ 1.84
CCNC-213ENST00000523541 NCOA1Q15788 1441 aa26.55■■□□□ 1.84
CCNC-213ENST00000523541 FBXO31Q5XUX0 539 aaPredicted RBP26.53■■□□□ 1.84
CCNC-213ENST00000523541 CERKQ8TCT0 537 aa26.53■■□□□ 1.84
CCNC-213ENST00000523541 ZNF142P52746 1687 aaPredicted RBP26.52■■□□□ 1.84
CCNC-213ENST00000523541 TNRQ92752 1358 aa26.52■■□□□ 1.84
CCNC-213ENST00000523541 CHIC2Q9UKJ5 165 aa26.52■■□□□ 1.84
CCNC-213ENST00000523541 PTPRTO14522 1441 aa26.51■■□□□ 1.83
CCNC-213ENST00000523541 ADGRL2O95490 1459 aa26.49■■□□□ 1.83
CCNC-213ENST00000523541 NCKAP5LQ9HCH0 1330 aa26.49■■□□□ 1.83
CCNC-213ENST00000523541 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.48■■□□□ 1.83
CCNC-213ENST00000523541 ZC3H13Q5T200 1668 aaKnown RBP26.47■■□□□ 1.83
CCNC-213ENST00000523541 PKD2Q13563 968 aa26.47■■□□□ 1.83
CCNC-213ENST00000523541 ABCC3O15438 1527 aa26.47■■□□□ 1.83
CCNC-213ENST00000523541 A2ML1A8K2U0 1454 aa26.47■■□□□ 1.83
CCNC-213ENST00000523541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.46■■□□□ 1.83
CCNC-213ENST00000523541 KANK1Q14678 1352 aa26.46■■□□□ 1.83
CCNC-213ENST00000523541 PLA2R1Q13018 1463 aa26.45■■□□□ 1.82
CCNC-213ENST00000523541 ARHGAP31Q2M1Z3 1444 aa26.43■■□□□ 1.82
CCNC-213ENST00000523541 MROH1Q8NDA8 1641 aa26.43■■□□□ 1.82
CCNC-213ENST00000523541 NLRP1Q9C000 1473 aa26.42■■□□□ 1.82
CCNC-213ENST00000523541 CEP152O94986 1710 aa26.42■■□□□ 1.82
CCNC-213ENST00000523541 PRDM15P57071 1507 aaPredicted RBP26.41■■□□□ 1.82
CCNC-213ENST00000523541 THEMISQ8N1K5 641 aaPredicted RBP26.41■■□□□ 1.82
CCNC-213ENST00000523541 ROCK1Q13464 1354 aa26.4■■□□□ 1.82
CCNC-213ENST00000523541 PPARGC1BQ86YN6 1023 aaKnown RBP26.38■■□□□ 1.81
CCNC-213ENST00000523541 DEPDC5O75140 1603 aa26.37■■□□□ 1.81
CCNC-213ENST00000523541 ANKRD50Q9ULJ7 1429 aa26.37■■□□□ 1.81
CCNC-213ENST00000523541 SPATA31D1Q6ZQQ2 1576 aa26.36■■□□□ 1.81
CCNC-213ENST00000523541 UGGT1Q9NYU2 1555 aa26.34■■□□□ 1.81
CCNC-213ENST00000523541 ERVK-7P63135 1459 aa26.34■■□□□ 1.81
CCNC-213ENST00000523541 LMTK2Q8IWU2 1503 aa26.34■■□□□ 1.81
CCNC-213ENST00000523541 CFAP65Q6ZU64 1925 aaKnown RBP26.32■■□□□ 1.8
CCNC-213ENST00000523541 ANKLE2Q86XL3 938 aa26.31■■□□□ 1.8
CCNC-213ENST00000523541 VWDEQ8N2E2 1590 aa26.3■■□□□ 1.8
CCNC-213ENST00000523541 POLR1AO95602 1720 aaPredicted RBP26.29■■□□□ 1.8
CCNC-213ENST00000523541 ZNF335Q9H4Z2 1342 aaPredicted RBP26.29■■□□□ 1.8
CCNC-213ENST00000523541 ITGAEP38570 1179 aa26.28■■□□□ 1.8
CCNC-213ENST00000523541 RRBP1Q9P2E9 1410 aaKnown RBP26.27■■□□□ 1.8
CCNC-213ENST00000523541 LTBP4Q8N2S1 1624 aa26.27■■□□□ 1.8
CCNC-213ENST00000523541 STAG3Q9UJ98 1225 aa26.22■■□□□ 1.79
CCNC-213ENST00000523541 RPRD2Q5VT52 1461 aaKnown RBP26.21■■□□□ 1.79
CCNC-213ENST00000523541 SLC52A1Q9NWF4 448 aa26.2■■□□□ 1.78
CCNC-213ENST00000523541 NEURL4Q96JN8 1562 aa26.2■■□□□ 1.78
CCNC-213ENST00000523541 MED14O60244 1454 aa26.18■■□□□ 1.78
CCNC-213ENST00000523541 NPHP4O75161 1426 aaPredicted RBP26.18■■□□□ 1.78
CCNC-213ENST00000523541 NOS1P29475 1434 aa26.17■■□□□ 1.78
CCNC-213ENST00000523541 EFCAB6Q5THR3 1501 aa26.17■■□□□ 1.78
CCNC-213ENST00000523541 IQSEC2Q5JU85 1478 aa26.17■■□□□ 1.78
CCNC-213ENST00000523541 UBR1Q8IWV7 1749 aa26.16■■□□□ 1.78
CCNC-213ENST00000523541 IDI1Q13907 227 aa26.15■■□□□ 1.78
CCNC-213ENST00000523541 IQGAP1P46940 1657 aa26.12■■□□□ 1.77
CCNC-213ENST00000523541 UNC13BO14795 1591 aa26.12■■□□□ 1.77
CCNC-213ENST00000523541 EID1Q9Y6B2 187 aa26.12■■□□□ 1.77
CCNC-213ENST00000523541 PIK3C2BO00750 1634 aa26.11■■□□□ 1.77
CCNC-213ENST00000523541 UBAP1LF5GYI3 381 aa26.11■■□□□ 1.77
CCNC-213ENST00000523541 NUP155O75694 1391 aa26.1■■□□□ 1.77
CCNC-213ENST00000523541 TXNDC2Q86VQ3 553 aa26.1■■□□□ 1.77
CCNC-213ENST00000523541 ARHGAP23Q9P227 1491 aa26.1■■□□□ 1.77
CCNC-213ENST00000523541 SLIT1O75093 1534 aa26.09■■□□□ 1.77
CCNC-213ENST00000523541 TET3O43151 1660 aa26.09■■□□□ 1.77
CCNC-213ENST00000523541 SCAF11Q99590 1463 aaKnown RBP26.08■■□□□ 1.77
CCNC-213ENST00000523541 KDM5AP29375 1690 aaKnown RBP26.08■■□□□ 1.77
CCNC-213ENST00000523541 CPS1P31327 1500 aa26.07■■□□□ 1.76
CCNC-213ENST00000523541 TMEM2Q9UHN6 1383 aa26.07■■□□□ 1.76
CCNC-213ENST00000523541 SYNMO15061 1565 aa26.05■■□□□ 1.76
CCNC-213ENST00000523541 LTKP29376 864 aa26.04■■□□□ 1.76
CCNC-213ENST00000523541 SCAF1Q9H7N4 1312 aaKnown RBP26.04■■□□□ 1.76
CCNC-213ENST00000523541 IQGAP3Q86VI3 1631 aa26.03■■□□□ 1.76
CCNC-213ENST00000523541 HDGFP51858 240 aaKnown RBP26.03■■□□□ 1.76
CCNC-213ENST00000523541 GCC2Q8IWJ2 1684 aa26.03■■□□□ 1.76
CCNC-213ENST00000523541 NAIPQ13075 1403 aa26.02■■□□□ 1.76
CCNC-213ENST00000523541 HFM1A2PYH4 1435 aa25.99■■□□□ 1.75
CCNC-213ENST00000523541 BCANQ96GW7 911 aa25.99■■□□□ 1.75
CCNC-213ENST00000523541 ADGRB3O60242 1522 aa25.98■■□□□ 1.75
CCNC-213ENST00000523541 CHGAP10645 457 aaKnown RBP25.98■■□□□ 1.75
CCNC-213ENST00000523541 PIP4K2BP78356 416 aa25.96■■□□□ 1.75
CCNC-213ENST00000523541 TOM1O60784 492 aa25.95■■□□□ 1.74
CCNC-213ENST00000523541 ACIN1Q9UKV3 1341 aaKnown RBP25.93■■□□□ 1.74
CCNC-213ENST00000523541 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.93■■□□□ 1.74
CCNC-213ENST00000523541 E9PCH4 1651 aa25.93■■□□□ 1.74
CCNC-213ENST00000523541 PPP1R15AO75807 674 aaPredicted RBP25.92■■□□□ 1.74
CCNC-213ENST00000523541 SENP3Q9H4L4 574 aaPredicted RBP25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms