RNA–Protein interactions for RNA: ENST00000521646.1

CSMD1-210, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 5

Gene CSMD1, Length 1,003 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-210ENST00000521646 SYCP2Q9BX26 1530 aa18.24■□□□□ 0.51
CSMD1-210ENST00000521646 GPATCH8Q9UKJ3 1502 aaKnown RBP18.24■□□□□ 0.51
CSMD1-210ENST00000521646 FYCO1Q9BQS8 1478 aa18.24■□□□□ 0.51
CSMD1-210ENST00000521646 UHRF1BP1Q6BDS2 1440 aa18.22■□□□□ 0.51
CSMD1-210ENST00000521646 MYT1LQ9UL68 1186 aa18.2■□□□□ 0.5
CSMD1-210ENST00000521646 SETD1BQ9UPS6 1966 aaKnown RBP18.2■□□□□ 0.5
CSMD1-210ENST00000521646 HNRNPMP52272 730 aaKnown RBP eCLIP18.18■□□□□ 0.5
CSMD1-210ENST00000521646 PLXNC1O60486 1568 aa18.17■□□□□ 0.5
CSMD1-210ENST00000521646 INO80Q9ULG1 1556 aaPredicted RBP18.17■□□□□ 0.5
CSMD1-210ENST00000521646 LTBP4Q8N2S1 1624 aa18.17■□□□□ 0.5
CSMD1-210ENST00000521646 PRKAR2AP13861 404 aaKnown RBP18.17■□□□□ 0.5
CSMD1-210ENST00000521646 ZNF777Q9ULD5 760 aaPredicted RBP18.17■□□□□ 0.5
CSMD1-210ENST00000521646 SUPT6HQ7KZ85 1726 aaKnown RBP18.17■□□□□ 0.5
CSMD1-210ENST00000521646 STAG3Q9UJ98 1225 aa18.16■□□□□ 0.5
CSMD1-210ENST00000521646 NCOA1Q15788 1441 aa18.15■□□□□ 0.5
CSMD1-210ENST00000521646 ATP7AQ04656 1500 aa18.14■□□□□ 0.49
CSMD1-210ENST00000521646 ZNF644Q9H582 1327 aaPredicted RBP18.14■□□□□ 0.49
CSMD1-210ENST00000521646 PTPRTO14522 1441 aa18.13■□□□□ 0.49
CSMD1-210ENST00000521646 TIAM1Q13009 1591 aa18.13■□□□□ 0.49
CSMD1-210ENST00000521646 MROH2AA6NES4 1674 aa18.12■□□□□ 0.49
CSMD1-210ENST00000521646 CLTCQ00610 1675 aaKnown RBP18.12■□□□□ 0.49
CSMD1-210ENST00000521646 CAMSAP1Q5T5Y3 1602 aa18.1■□□□□ 0.49
CSMD1-210ENST00000521646 KIAA1107Q9UPP5 1409 aa18.1■□□□□ 0.49
CSMD1-210ENST00000521646 ZMYM3Q14202 1370 aa18.1■□□□□ 0.49
CSMD1-210ENST00000521646 SPAG9O60271 1321 aaKnown RBP18.1■□□□□ 0.49
CSMD1-210ENST00000521646 MBD5Q9P267 1494 aa18.09■□□□□ 0.49
CSMD1-210ENST00000521646 A2MP01023 1474 aa18.08■□□□□ 0.49
CSMD1-210ENST00000521646 CNTLNQ9NXG0 1405 aa18.08■□□□□ 0.49
CSMD1-210ENST00000521646 FKBP8Q14318 412 aa18.08■□□□□ 0.48
CSMD1-210ENST00000521646 CHADLQ6NUI6 762 aa18.08■□□□□ 0.48
CSMD1-210ENST00000521646 ILDR2Q71H61 639 aa18.08■□□□□ 0.48
CSMD1-210ENST00000521646 MYO3AQ8NEV4 1616 aa18.08■□□□□ 0.48
CSMD1-210ENST00000521646 PTPRKQ15262 1439 aa18.07■□□□□ 0.48
CSMD1-210ENST00000521646 NPATQ14207 1427 aa18.06■□□□□ 0.48
CSMD1-210ENST00000521646 CFDP1Q9UEE9 299 aaPredicted RBP18.06■□□□□ 0.48
CSMD1-210ENST00000521646 CCNB3Q8WWL7 1395 aa18.05■□□□□ 0.48
CSMD1-210ENST00000521646 ZNF142P52746 1687 aaPredicted RBP18.05■□□□□ 0.48
CSMD1-210ENST00000521646 NCKAP5LQ9HCH0 1330 aa18.04■□□□□ 0.48
CSMD1-210ENST00000521646 ADGBQ8N7X0 1667 aa18.03■□□□□ 0.48
CSMD1-210ENST00000521646 HAX1O00165 279 aa18.03■□□□□ 0.48
CSMD1-210ENST00000521646 MTUS2Q5JR59 1369 aa18.02■□□□□ 0.47
CSMD1-210ENST00000521646 PLEKHH2Q8IVE3 1493 aa18.01■□□□□ 0.47
CSMD1-210ENST00000521646 CEP170BQ9Y4F5 1589 aaPredicted RBP18.01■□□□□ 0.47
CSMD1-210ENST00000521646 ESF1Q9H501 851 aaKnown RBP18.01■□□□□ 0.47
CSMD1-210ENST00000521646 TCOF1Q13428 1488 aaKnown RBP18.01■□□□□ 0.47
CSMD1-210ENST00000521646 ZNF335Q9H4Z2 1342 aaPredicted RBP18■□□□□ 0.47
CSMD1-210ENST00000521646 EHBP1L1Q8N3D4 1523 aa18■□□□□ 0.47
CSMD1-210ENST00000521646 GGT6Q6P531 493 aa17.99■□□□□ 0.47
CSMD1-210ENST00000521646 PROM2Q8N271 834 aa17.99■□□□□ 0.47
CSMD1-210ENST00000521646 CEP162Q5TB80 1403 aa17.98■□□□□ 0.47
CSMD1-210ENST00000521646 PLA2R1Q13018 1463 aa17.95■□□□□ 0.46
CSMD1-210ENST00000521646 DNMT1P26358 1616 aaKnown RBP17.95■□□□□ 0.46
CSMD1-210ENST00000521646 DISP3Q9P2K9 1392 aa17.95■□□□□ 0.46
CSMD1-210ENST00000521646 NCOA2Q15596 1464 aa17.95■□□□□ 0.46
CSMD1-210ENST00000521646 FBXO31Q5XUX0 539 aaPredicted RBP17.94■□□□□ 0.46
CSMD1-210ENST00000521646 NEURL4Q96JN8 1562 aa17.94■□□□□ 0.46
CSMD1-210ENST00000521646 CAMSAP2Q08AD1 1489 aa17.94■□□□□ 0.46
CSMD1-210ENST00000521646 IQSEC2Q5JU85 1478 aa17.94■□□□□ 0.46
CSMD1-210ENST00000521646 RTEL1-TNFRSF6BF6WH68 1400 aa17.93■□□□□ 0.46
CSMD1-210ENST00000521646 DHX29Q7Z478 1369 aaKnown RBP17.92■□□□□ 0.46
CSMD1-210ENST00000521646 SPATA31D1Q6ZQQ2 1576 aa17.92■□□□□ 0.46
CSMD1-210ENST00000521646 A2ML1A8K2U0 1454 aa17.91■□□□□ 0.46
CSMD1-210ENST00000521646 CCDC141Q6ZP82 1450 aa17.89■□□□□ 0.45
CSMD1-210ENST00000521646 PZPP20742 1482 aa17.87■□□□□ 0.45
CSMD1-210ENST00000521646 KDM5DQ9BY66 1539 aa17.87■□□□□ 0.45
CSMD1-210ENST00000521646 KIF3BO15066 747 aa17.86■□□□□ 0.45
CSMD1-210ENST00000521646 PKD2Q13563 968 aa17.86■□□□□ 0.45
CSMD1-210ENST00000521646 ALKQ9UM73 1620 aa17.85■□□□□ 0.45
CSMD1-210ENST00000521646 POLR1AO95602 1720 aaPredicted RBP17.84■□□□□ 0.45
CSMD1-210ENST00000521646 ARHGEF5Q12774 1597 aa17.84■□□□□ 0.45
CSMD1-210ENST00000521646 TNRQ92752 1358 aa17.84■□□□□ 0.45
CSMD1-210ENST00000521646 CREBZFQ9NS37 354 aa17.84■□□□□ 0.45
CSMD1-210ENST00000521646 FARP1Q9Y4F1 1045 aaPredicted RBP17.84■□□□□ 0.45
CSMD1-210ENST00000521646 MROH1Q8NDA8 1641 aa17.83■□□□□ 0.45
CSMD1-210ENST00000521646 LOC105371045A0A1W2PR82 267 aa17.82■□□□□ 0.44
CSMD1-210ENST00000521646 KANK4Q5T7N3 995 aaPredicted RBP17.82■□□□□ 0.44
CSMD1-210ENST00000521646 VWDEQ8N2E2 1590 aa17.82■□□□□ 0.44
CSMD1-210ENST00000521646 UBAP1LF5GYI3 381 aa17.81■□□□□ 0.44
CSMD1-210ENST00000521646 LRRC9Q6ZRR7 1453 aa17.81■□□□□ 0.44
CSMD1-210ENST00000521646 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.8■□□□□ 0.44
CSMD1-210ENST00000521646 RNF17Q9BXT8 1623 aaKnown RBP17.8■□□□□ 0.44
CSMD1-210ENST00000521646 SOCS7O14512 581 aa17.8■□□□□ 0.44
CSMD1-210ENST00000521646 STRCP1A6NGW2 1772 aa17.8■□□□□ 0.44
CSMD1-210ENST00000521646 MIA2Q96PC5 1412 aa17.79■□□□□ 0.44
CSMD1-210ENST00000521646 ABCC3O15438 1527 aa17.78■□□□□ 0.44
CSMD1-210ENST00000521646 MAST1Q9Y2H9 1570 aa17.78■□□□□ 0.44
CSMD1-210ENST00000521646 FAM135AQ9P2D6 1515 aa17.77■□□□□ 0.44
CSMD1-210ENST00000521646 VPS8Q8N3P4 1428 aa17.77■□□□□ 0.44
CSMD1-210ENST00000521646 SHANK2Q9UPX8 1470 aa17.76■□□□□ 0.43
CSMD1-210ENST00000521646 WASHC2CQ9Y4E1 1318 aa17.76■□□□□ 0.43
CSMD1-210ENST00000521646 EVX2Q03828 476 aa17.75■□□□□ 0.43
CSMD1-210ENST00000521646 CEP152O94986 1710 aa17.75■□□□□ 0.43
CSMD1-210ENST00000521646 UGGT1Q9NYU2 1555 aa17.74■□□□□ 0.43
CSMD1-210ENST00000521646 SP7Q8TDD2 431 aaPredicted RBP17.74■□□□□ 0.43
CSMD1-210ENST00000521646 MED14O60244 1454 aa17.74■□□□□ 0.43
CSMD1-210ENST00000521646 DEPDC5O75140 1603 aa17.73■□□□□ 0.43
CSMD1-210ENST00000521646 C19orf67A6NJJ6 358 aa17.73■□□□□ 0.43
CSMD1-210ENST00000521646 HSPA1LP34931 641 aa17.73■□□□□ 0.43
CSMD1-210ENST00000521646 NLRP1Q9C000 1473 aa17.73■□□□□ 0.43
CSMD1-210ENST00000521646 ERVK-7P63135 1459 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms