RNA–Protein interactions for RNA: ENST00000520520.1

CTNNA1-223, Transcript of catenin alpha 1, human

TSL 3

Gene CTNNA1, Length 484 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNNA1-223	ENST00000520520	CNTLN	Q9NXG0	1405 aa		12.64	□□□□□ -0.39
CTNNA1-223	ENST00000520520	CAMSAP1	Q5T5Y3	1602 aa		12.64	□□□□□ -0.39
CTNNA1-223	ENST00000520520	CFDP1	Q9UEE9	299 aa	Predicted RBP	12.64	□□□□□ -0.39
CTNNA1-223	ENST00000520520	PTPRT	O14522	1441 aa		12.63	□□□□□ -0.39
CTNNA1-223	ENST00000520520	GPATCH8	Q9UKJ3	1502 aa	Known RBP	12.63	□□□□□ -0.39
CTNNA1-223	ENST00000520520	ZMYM3	Q14202	1370 aa		12.63	□□□□□ -0.39
CTNNA1-223	ENST00000520520	CCNB3	Q8WWL7	1395 aa		12.63	□□□□□ -0.39
CTNNA1-223	ENST00000520520	NCOA1	Q15788	1441 aa		12.62	□□□□□ -0.39
CTNNA1-223	ENST00000520520	ATP7A	Q04656	1500 aa		12.62	□□□□□ -0.39
CTNNA1-223	ENST00000520520	MTUS2	Q5JR59	1369 aa		12.62	□□□□□ -0.39
CTNNA1-223	ENST00000520520	MROH2A	A6NES4	1674 aa		12.61	□□□□□ -0.39
CTNNA1-223	ENST00000520520	SPATA31D1	Q6ZQQ2	1576 aa		12.6	□□□□□ -0.39
CTNNA1-223	ENST00000520520	LTBP4	Q8N2S1	1624 aa		12.6	□□□□□ -0.39
CTNNA1-223	ENST00000520520	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	12.6	□□□□□ -0.39
CTNNA1-223	ENST00000520520	ZNF644	Q9H582	1327 aa	Predicted RBP	12.6	□□□□□ -0.39
CTNNA1-223	ENST00000520520	A2M	P01023	1474 aa		12.59	□□□□□ -0.39
CTNNA1-223	ENST00000520520	MYO3A	Q8NEV4	1616 aa		12.59	□□□□□ -0.39
CTNNA1-223	ENST00000520520	NEUROD1	Q13562	356 aa		12.59	□□□□□ -0.39
CTNNA1-223	ENST00000520520	INO80	Q9ULG1	1556 aa	Predicted RBP	12.59	□□□□□ -0.39
CTNNA1-223	ENST00000520520	NPAT	Q14207	1427 aa		12.58	□□□□□ -0.4
CTNNA1-223	ENST00000520520	RRBP1	Q9P2E9	1410 aa	Known RBP	12.57	□□□□□ -0.4
CTNNA1-223	ENST00000520520	UBAP1L	F5GYI3	381 aa		12.57	□□□□□ -0.4
CTNNA1-223	ENST00000520520	PLEKHH2	Q8IVE3	1493 aa		12.57	□□□□□ -0.4
CTNNA1-223	ENST00000520520	MAP3K1	Q13233	1512 aa		12.57	□□□□□ -0.4
CTNNA1-223	ENST00000520520	PLXNC1	O60486	1568 aa		12.56	□□□□□ -0.4
CTNNA1-223	ENST00000520520	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	12.56	□□□□□ -0.4
CTNNA1-223	ENST00000520520	KIAA1107	Q9UPP5	1409 aa		12.55	□□□□□ -0.4
CTNNA1-223	ENST00000520520	MYT1	Q01538	1121 aa		12.55	□□□□□ -0.4
CTNNA1-223	ENST00000520520	TIAM1	Q13009	1591 aa		12.55	□□□□□ -0.4
CTNNA1-223	ENST00000520520	ADGB	Q8N7X0	1667 aa		12.54	□□□□□ -0.4
CTNNA1-223	ENST00000520520	PTPRK	Q15262	1439 aa		12.54	□□□□□ -0.4
CTNNA1-223	ENST00000520520	SOCS7	O14512	581 aa		12.54	□□□□□ -0.4
CTNNA1-223	ENST00000520520	ZNF142	P52746	1687 aa	Predicted RBP	12.54	□□□□□ -0.4
CTNNA1-223	ENST00000520520	GTF3C3	Q9Y5Q9	886 aa		12.53	□□□□□ -0.4
CTNNA1-223	ENST00000520520	ATXN8OS	P0DMR3	200 aa		12.52	□□□□□ -0.41
CTNNA1-223	ENST00000520520	PKD2	Q13563	968 aa		12.52	□□□□□ -0.41
CTNNA1-223	ENST00000520520	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.52	□□□□□ -0.41
CTNNA1-223	ENST00000520520	EHBP1L1	Q8N3D4	1523 aa		12.52	□□□□□ -0.41
CTNNA1-223	ENST00000520520	KIF3B	O15066	747 aa		12.51	□□□□□ -0.41
CTNNA1-223	ENST00000520520	PIP4K2B	P78356	416 aa		12.51	□□□□□ -0.41
CTNNA1-223	ENST00000520520	FBXO31	Q5XUX0	539 aa	Predicted RBP	12.51	□□□□□ -0.41
CTNNA1-223	ENST00000520520	IQSEC2	Q5JU85	1478 aa		12.51	□□□□□ -0.41
CTNNA1-223	ENST00000520520	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.5	□□□□□ -0.41
CTNNA1-223	ENST00000520520	PLA2R1	Q13018	1463 aa		12.49	□□□□□ -0.41
CTNNA1-223	ENST00000520520	DHX57	Q6P158	1386 aa	Known RBP	12.49	□□□□□ -0.41
CTNNA1-223	ENST00000520520	DNMT1	P26358	1616 aa	Known RBP	12.48	□□□□□ -0.41
CTNNA1-223	ENST00000520520	A2ML1	A8K2U0	1454 aa		12.48	□□□□□ -0.41
CTNNA1-223	ENST00000520520	TCOF1	Q13428	1488 aa	Known RBP	12.48	□□□□□ -0.41
CTNNA1-223	ENST00000520520	MBD5	Q9P267	1494 aa		12.48	□□□□□ -0.41
CTNNA1-223	ENST00000520520	CAMSAP2	Q08AD1	1489 aa		12.47	□□□□□ -0.41
CTNNA1-223	ENST00000520520	DHX29	Q7Z478	1369 aa	Known RBP	12.47	□□□□□ -0.41
CTNNA1-223	ENST00000520520	TNR	Q92752	1358 aa		12.47	□□□□□ -0.41
CTNNA1-223	ENST00000520520	WASHC2C	Q9Y4E1	1318 aa		12.47	□□□□□ -0.41
CTNNA1-223	ENST00000520520	C1QBP	Q07021	282 aa	Known RBP	12.47	□□□□□ -0.41
CTNNA1-223	ENST00000520520	CCDC141	Q6ZP82	1450 aa		12.46	□□□□□ -0.41
CTNNA1-223	ENST00000520520	POLR1A	O95602	1720 aa	Predicted RBP	12.46	□□□□□ -0.41
CTNNA1-223	ENST00000520520	NCOA2	Q15596	1464 aa		12.46	□□□□□ -0.42
CTNNA1-223	ENST00000520520	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	12.45	□□□□□ -0.42
CTNNA1-223	ENST00000520520	KDM5D	Q9BY66	1539 aa		12.45	□□□□□ -0.42
CTNNA1-223	ENST00000520520	RTEL1-TNFRSF6B	F6WH68	1400 aa		12.45	□□□□□ -0.42
CTNNA1-223	ENST00000520520	HSPA1L	P34931	641 aa		12.43	□□□□□ -0.42
CTNNA1-223	ENST00000520520	NEURL4	Q96JN8	1562 aa		12.43	□□□□□ -0.42
CTNNA1-223	ENST00000520520	PZP	P20742	1482 aa		12.42	□□□□□ -0.42
CTNNA1-223	ENST00000520520	TSPY4	P0CV99	314 aa		12.42	□□□□□ -0.42
CTNNA1-223	ENST00000520520	TSPY10	P0CW01	314 aa		12.42	□□□□□ -0.42
CTNNA1-223	ENST00000520520	ANKLE2	Q86XL3	938 aa		12.41	□□□□□ -0.42
CTNNA1-223	ENST00000520520	SHANK2	Q9UPX8	1470 aa		12.4	□□□□□ -0.42
CTNNA1-223	ENST00000520520	UGGT1	Q9NYU2	1555 aa		12.4	□□□□□ -0.42
CTNNA1-223	ENST00000520520	TOM1	O60784	492 aa		12.4	□□□□□ -0.42
CTNNA1-223	ENST00000520520	MIA2	Q96PC5	1412 aa		12.39	□□□□□ -0.43
CTNNA1-223	ENST00000520520	FAM135A	Q9P2D6	1515 aa		12.39	□□□□□ -0.43
CTNNA1-223	ENST00000520520	MIER1	Q8N108	512 aa		12.39	□□□□□ -0.43
CTNNA1-223	ENST00000520520	THEMIS	Q8N1K5	641 aa	Predicted RBP	12.39	□□□□□ -0.43
CTNNA1-223	ENST00000520520	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.39	□□□□□ -0.43
CTNNA1-223	ENST00000520520	NPHP4	O75161	1426 aa	Predicted RBP	12.38	□□□□□ -0.43
CTNNA1-223	ENST00000520520	CPS1	P31327	1500 aa		12.38	□□□□□ -0.43
CTNNA1-223	ENST00000520520	YTHDC1	Q96MU7	727 aa	Known RBP	12.38	□□□□□ -0.43
CTNNA1-223	ENST00000520520	RSPH4A	Q5TD94	716 aa		12.37	□□□□□ -0.43
CTNNA1-223	ENST00000520520	LRRC9	Q6ZRR7	1453 aa		12.37	□□□□□ -0.43
CTNNA1-223	ENST00000520520	MED1	Q15648	1581 aa	Predicted RBP	12.37	□□□□□ -0.43
CTNNA1-223	ENST00000520520	CFAP65	Q6ZU64	1925 aa	Known RBP	12.37	□□□□□ -0.43
CTNNA1-223	ENST00000520520	ARHGEF5	Q12774	1597 aa		12.36	□□□□□ -0.43
CTNNA1-223	ENST00000520520	VWDE	Q8N2E2	1590 aa		12.36	□□□□□ -0.43
CTNNA1-223	ENST00000520520	NLRP1	Q9C000	1473 aa		12.36	□□□□□ -0.43
CTNNA1-223	ENST00000520520	CEP152	O94986	1710 aa		12.36	□□□□□ -0.43
CTNNA1-223	ENST00000520520	IQGAP1	P46940	1657 aa		12.35	□□□□□ -0.43
CTNNA1-223	ENST00000520520	ABCC3	O15438	1527 aa		12.34	□□□□□ -0.43
CTNNA1-223	ENST00000520520	KANK4	Q5T7N3	995 aa	Predicted RBP	12.34	□□□□□ -0.43
CTNNA1-223	ENST00000520520	SETD5	Q9C0A6	1442 aa		12.33	□□□□□ -0.44
CTNNA1-223	ENST00000520520	RNF17	Q9BXT8	1623 aa	Known RBP	12.33	□□□□□ -0.44
CTNNA1-223	ENST00000520520	ZC3H13	Q5T200	1668 aa	Known RBP	12.32	□□□□□ -0.44
CTNNA1-223	ENST00000520520	STRCP1	A6NGW2	1772 aa		12.32	□□□□□ -0.44
CTNNA1-223	ENST00000520520	DEPDC5	O75140	1603 aa		12.32	□□□□□ -0.44
CTNNA1-223	ENST00000520520	ERVK-7	P63135	1459 aa		12.32	□□□□□ -0.44
CTNNA1-223	ENST00000520520	RAB3GAP2	Q9H2M9	1393 aa		12.3	□□□□□ -0.44
CTNNA1-223	ENST00000520520	MED14	O60244	1454 aa		12.3	□□□□□ -0.44
CTNNA1-223	ENST00000520520	RRP7BP	Q9NSQ0	103 aa		12.3	□□□□□ -0.44
CTNNA1-223	ENST00000520520	TIMELESS	Q9UNS1	1208 aa		12.3	□□□□□ -0.44
CTNNA1-223	ENST00000520520	MAST1	Q9Y2H9	1570 aa		12.3	□□□□□ -0.44
CTNNA1-223	ENST00000520520	MROH1	Q8NDA8	1641 aa		12.29	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 447 ms