RNA–Protein interactions for RNA: ENST00000517138.1

SCARNA1-201, small Cajal body-specific RNA 1, humanhuman

BASIC

Gene SCARNA1, Length 166 nt, Biotype scaRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA1-201ENST00000517138 LSM11P83369 360 aaKnown RBP eCLIP13.49□□□□□ -0.25
SCARNA1-201ENST00000517138 TSR1Q2NL82 804 aaKnown RBP13.48□□□□□ -0.25
SCARNA1-201ENST00000517138 COL9A1P20849 921 aa13.47□□□□□ -0.25
SCARNA1-201ENST00000517138 EN1Q05925 392 aaPredicted RBP13.47□□□□□ -0.25
SCARNA1-201ENST00000517138 ANKRD13DQ6ZTN6 518 aa13.47□□□□□ -0.25
SCARNA1-201ENST00000517138 FBXW7Q969H0 707 aa13.47□□□□□ -0.25
SCARNA1-201ENST00000517138 C6orf132Q5T0Z8 1188 aa13.46□□□□□ -0.25
SCARNA1-201ENST00000517138 PTPREP23469 700 aa13.45□□□□□ -0.26
SCARNA1-201ENST00000517138 TESPA1A2RU30 521 aaPredicted RBP13.44□□□□□ -0.26
SCARNA1-201ENST00000517138 MAP3K7O43318 606 aa13.44□□□□□ -0.26
SCARNA1-201ENST00000517138 CDHR5Q9HBB8 845 aa13.43□□□□□ -0.26
SCARNA1-201ENST00000517138 SPNS2Q8IVW8 549 aa13.42□□□□□ -0.26
SCARNA1-201ENST00000517138 ZBED2Q9BTP6 218 aa13.39□□□□□ -0.27
SCARNA1-201ENST00000517138 PROX2Q3B8N5 592 aa13.38□□□□□ -0.27
SCARNA1-201ENST00000517138 ADGRD1Q6QNK2 874 aa13.38□□□□□ -0.27
SCARNA1-201ENST00000517138 PPP1R3GB7ZBB8 358 aa13.37□□□□□ -0.27
SCARNA1-201ENST00000517138 KCNH8Q96L42 1107 aa13.36□□□□□ -0.27
SCARNA1-201ENST00000517138 VPS9D1Q9Y2B5 631 aa13.36□□□□□ -0.27
SCARNA1-201ENST00000517138 RBM26Q5T8P6 1007 aaKnown RBP13.35□□□□□ -0.27
SCARNA1-201ENST00000517138 NPDC1Q9NQX5 325 aaPredicted RBP13.33□□□□□ -0.28
SCARNA1-201ENST00000517138 PLSCR2Q9NRY7 297 aa13.33□□□□□ -0.28
SCARNA1-201ENST00000517138 TK2O00142 265 aa13.32□□□□□ -0.28
SCARNA1-201ENST00000517138 HRO43593 1189 aa13.32□□□□□ -0.28
SCARNA1-201ENST00000517138 SLC4A5Q9BY07 1137 aa13.3□□□□□ -0.28
SCARNA1-201ENST00000517138 FAM198AQ9UFP1 575 aa13.29□□□□□ -0.28
SCARNA1-201ENST00000517138 MMRN1Q13201 1228 aa13.28□□□□□ -0.28
SCARNA1-201ENST00000517138 NUTM2FA1L443 756 aa13.27□□□□□ -0.29
SCARNA1-201ENST00000517138 TSKSQ9UJT2 592 aa13.27□□□□□ -0.29
SCARNA1-201ENST00000517138 BHMG1C9JSJ3 638 aaPredicted RBP13.26□□□□□ -0.29
SCARNA1-201ENST00000517138 C3orf80F5H4A9 247 aa13.26□□□□□ -0.29
SCARNA1-201ENST00000517138 CDCA7LQ96GN5 454 aa13.25□□□□□ -0.29
SCARNA1-201ENST00000517138 TRIM6-TRIM34B2RNG4 842 aa13.24□□□□□ -0.29
SCARNA1-201ENST00000517138 PTGDRQ13258 359 aa13.24□□□□□ -0.29
SCARNA1-201ENST00000517138 SMYD5Q6GMV2 418 aa13.24□□□□□ -0.29
SCARNA1-201ENST00000517138 KIAA1468Q9P260 1216 aa13.24□□□□□ -0.29
SCARNA1-201ENST00000517138 PRSS12P56730 875 aa13.23□□□□□ -0.29
SCARNA1-201ENST00000517138 MYT1LQ9UL68 1186 aa13.22□□□□□ -0.29
SCARNA1-201ENST00000517138 GPR37O15354 613 aa13.21□□□□□ -0.29
SCARNA1-201ENST00000517138 RABGEF1Q9UJ41 708 aa13.21□□□□□ -0.29
SCARNA1-201ENST00000517138 PADI6Q6TGC4 694 aa13.2□□□□□ -0.3
SCARNA1-201ENST00000517138 SEPT9Q9UHD8 586 aaPredicted RBP13.2□□□□□ -0.3
SCARNA1-201ENST00000517138 CERKQ8TCT0 537 aa13.19□□□□□ -0.3
SCARNA1-201ENST00000517138 SMAPO00193 183 aa13.18□□□□□ -0.3
SCARNA1-201ENST00000517138 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.18□□□□□ -0.3
SCARNA1-201ENST00000517138 TTC13Q8NBP0 860 aa13.17□□□□□ -0.3
SCARNA1-201ENST00000517138 ONECUT3O60422 494 aaPredicted RBP13.16□□□□□ -0.3
SCARNA1-201ENST00000517138 FECHP22830 423 aa13.16□□□□□ -0.3
SCARNA1-201ENST00000517138 RNF166Q96A37 237 aaPredicted RBP13.16□□□□□ -0.3
SCARNA1-201ENST00000517138 FCHSD2O94868 740 aa13.14□□□□□ -0.31
SCARNA1-201ENST00000517138 FAM161AQ3B820 660 aa13.14□□□□□ -0.31
SCARNA1-201ENST00000517138 GPIHBP1Q8IV16 184 aa13.14□□□□□ -0.31
SCARNA1-201ENST00000517138 MRPL50Q8N5N7 158 aaKnown RBP13.14□□□□□ -0.31
SCARNA1-201ENST00000517138 STAC3Q96MF2 364 aa13.13□□□□□ -0.31
SCARNA1-201ENST00000517138 LMOD2Q6P5Q4 547 aa13.12□□□□□ -0.31
SCARNA1-201ENST00000517138 PACS2Q86VP3 889 aa13.12□□□□□ -0.31
SCARNA1-201ENST00000517138 NBPF3Q9H094 633 aa13.12□□□□□ -0.31
SCARNA1-201ENST00000517138 RBM27Q9P2N5 1060 aaKnown RBP13.12□□□□□ -0.31
SCARNA1-201ENST00000517138 NUDT18Q6ZVK8 323 aa13.11□□□□□ -0.31
SCARNA1-201ENST00000517138 TATDN2Q93075 761 aa13.11□□□□□ -0.31
SCARNA1-201ENST00000517138 KCTD12Q96CX2 325 aaKnown RBP13.11□□□□□ -0.31
SCARNA1-201ENST00000517138 PNMA3Q9UL41 463 aa13.11□□□□□ -0.31
SCARNA1-201ENST00000517138 TULP1O00294 542 aaPredicted RBP13.08□□□□□ -0.32
SCARNA1-201ENST00000517138 HIC1Q14526 733 aa13.08□□□□□ -0.32
SCARNA1-201ENST00000517138 GNPATO15228 680 aa13.07□□□□□ -0.32
SCARNA1-201ENST00000517138 ZFRQ96KR1 1074 aaKnown RBP13.06□□□□□ -0.32
SCARNA1-201ENST00000517138 NBPF26B4DH59 902 aa13.05□□□□□ -0.32
SCARNA1-201ENST00000517138 FAM98CQ17RN3 349 aaKnown RBP13.05□□□□□ -0.32
SCARNA1-201ENST00000517138 LAPTM4BQ86VI4 370 aa13.05□□□□□ -0.32
SCARNA1-201ENST00000517138 ADGRG1Q9Y653 693 aa13.05□□□□□ -0.32
SCARNA1-201ENST00000517138 GOLGA8CPA6NN73 597 aa13.04□□□□□ -0.32
SCARNA1-201ENST00000517138 WNT2BQ93097 391 aa13.04□□□□□ -0.32
SCARNA1-201ENST00000517138 EYA1Q99502 592 aa13.04□□□□□ -0.32
SCARNA1-201ENST00000517138 BCANQ96GW7 911 aa13.03□□□□□ -0.32
SCARNA1-201ENST00000517138 BCAMP50895 628 aa13.02□□□□□ -0.33
SCARNA1-201ENST00000517138 THSD4Q6ZMP0 1018 aa13.01□□□□□ -0.33
SCARNA1-201ENST00000517138 PTPN5P54829 565 aa12.99□□□□□ -0.33
SCARNA1-201ENST00000517138 SAMD7Q7Z3H4 446 aa12.99□□□□□ -0.33
SCARNA1-201ENST00000517138 ZC3H15Q8WU90 426 aaKnown RBP12.99□□□□□ -0.33
SCARNA1-201ENST00000517138 ANKK1Q8NFD2 765 aa12.98□□□□□ -0.33
SCARNA1-201ENST00000517138 SOWAHBA6NEL2 793 aa12.96□□□□□ -0.33
SCARNA1-201ENST00000517138 NLRP7Q8WX94 980 aa12.96□□□□□ -0.33
SCARNA1-201ENST00000517138 PXYLP1Q8TE99 480 aa12.95□□□□□ -0.34
SCARNA1-201ENST00000517138 PHOX2BQ99453 314 aa12.95□□□□□ -0.34
SCARNA1-201ENST00000517138 SWT1Q5T5J6 900 aaKnown RBP12.94□□□□□ -0.34
SCARNA1-201ENST00000517138 RBM46Q8TBY0 533 aaKnown RBP12.94□□□□□ -0.34
SCARNA1-201ENST00000517138 RCCD1A6NED2 376 aa12.93□□□□□ -0.34
SCARNA1-201ENST00000517138 METTL3Q86U44 580 aaKnown RBP12.93□□□□□ -0.34
SCARNA1-201ENST00000517138 LRCH3Q96II8 777 aa12.92□□□□□ -0.34
SCARNA1-201ENST00000517138 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.92□□□□□ -0.34
SCARNA1-201ENST00000517138 ZMYND10O75800 440 aa12.91□□□□□ -0.34
SCARNA1-201ENST00000517138 MAP2K5Q13163 448 aa12.91□□□□□ -0.34
SCARNA1-201ENST00000517138 WBP1LQ9NX94 342 aa12.9□□□□□ -0.34
SCARNA1-201ENST00000517138 HCSTQ9UBK5 93 aa12.9□□□□□ -0.34
SCARNA1-201ENST00000517138 IRF6O14896 467 aa12.89□□□□□ -0.35
SCARNA1-201ENST00000517138 OATP04181 439 aa12.89□□□□□ -0.35
SCARNA1-201ENST00000517138 DNAJB2P25686 324 aa12.89□□□□□ -0.35
SCARNA1-201ENST00000517138 HPS5Q9UPZ3 1129 aa12.89□□□□□ -0.35
SCARNA1-201ENST00000517138 BARGINQ6ZT62 677 aa12.88□□□□□ -0.35
SCARNA1-201ENST00000517138 TMEM134Q9H6X4 195 aa12.88□□□□□ -0.35
SCARNA1-201ENST00000517138 RNF40O75150 1001 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms