RNA–Protein interactions for RNA: ENST00000515710.1

TRIO-223, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 3

Gene TRIO, Length 1,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-223	ENST00000515710	HECW2	Q9P2P5	1572 aa		28.81	■■■□□ 2.2
TRIO-223	ENST00000515710	L3MBTL2	Q969R5	705 aa		28.8	■■■□□ 2.2
TRIO-223	ENST00000515710	TEX14	Q8IWB6	1497 aa		28.79	■■■□□ 2.2
TRIO-223	ENST00000515710	DEPDC5	O75140	1603 aa		28.79	■■■□□ 2.2
TRIO-223	ENST00000515710	A2M	P01023	1474 aa		28.78	■■■□□ 2.2
TRIO-223	ENST00000515710	DIEXF	Q68CQ4	756 aa	Known RBP	28.77	■■■□□ 2.2
TRIO-223	ENST00000515710	RAPGEF3	O95398	923 aa		28.77	■■■□□ 2.2
TRIO-223	ENST00000515710	KIF3B	O15066	747 aa		28.75	■■■□□ 2.19
TRIO-223	ENST00000515710	KANK1	Q14678	1352 aa		28.75	■■■□□ 2.19
TRIO-223	ENST00000515710	RICTOR	Q6R327	1708 aa		28.74	■■■□□ 2.19
TRIO-223	ENST00000515710	PPRC1	Q5VV67	1664 aa	Known RBP	28.72	■■■□□ 2.19
TRIO-223	ENST00000515710	VWDE	Q8N2E2	1590 aa		28.7	■■■□□ 2.18
TRIO-223	ENST00000515710	ATP10A	O60312	1499 aa		28.69	■■■□□ 2.18
TRIO-223	ENST00000515710	PRDM15	P57071	1507 aa	Predicted RBP	28.68	■■■□□ 2.18
TRIO-223	ENST00000515710	ABCA6	Q8N139	1617 aa		28.67	■■■□□ 2.18
TRIO-223	ENST00000515710	KIF13A	Q9H1H9	1805 aa		28.67	■■■□□ 2.18
TRIO-223	ENST00000515710	TSPOAP1	O95153	1857 aa		28.66	■■■□□ 2.18
TRIO-223	ENST00000515710	FRMPD1	Q5SYB0	1578 aa		28.65	■■■□□ 2.18
TRIO-223	ENST00000515710	CCDC144A	A2RUR9	1427 aa		28.65	■■■□□ 2.18
TRIO-223	ENST00000515710	PLA2R1	Q13018	1463 aa		28.65	■■■□□ 2.18
TRIO-223	ENST00000515710	MROH1	Q8NDA8	1641 aa		28.64	■■■□□ 2.18
TRIO-223	ENST00000515710	ZMYM4	Q5VZL5	1548 aa		28.63	■■■□□ 2.17
TRIO-223	ENST00000515710	TET3	O43151	1660 aa		28.63	■■■□□ 2.17
TRIO-223	ENST00000515710	RNF17	Q9BXT8	1623 aa	Known RBP	28.63	■■■□□ 2.17
TRIO-223	ENST00000515710	BCORL1	Q5H9F3	1711 aa		28.63	■■■□□ 2.17
TRIO-223	ENST00000515710	DIP2C	Q9Y2E4	1556 aa		28.63	■■■□□ 2.17
TRIO-223	ENST00000515710		E9PCH4	1651 aa		28.59	■■■□□ 2.17
TRIO-223	ENST00000515710	LMTK2	Q8IWU2	1503 aa		28.58	■■■□□ 2.17
TRIO-223	ENST00000515710	NBPF8	Q3BBV2	869 aa		28.57	■■■□□ 2.16
TRIO-223	ENST00000515710	PTPRT	O14522	1441 aa		28.55	■■■□□ 2.16
TRIO-223	ENST00000515710	YEATS2	Q9ULM3	1422 aa		28.55	■■■□□ 2.16
TRIO-223	ENST00000515710	PELP1	Q8IZL8	1130 aa	Known RBP	28.53	■■■□□ 2.16
TRIO-223	ENST00000515710	UHRF1BP1	Q6BDS2	1440 aa		28.52	■■■□□ 2.16
TRIO-223	ENST00000515710	TRPM2	O94759	1503 aa		28.51	■■■□□ 2.15
TRIO-223	ENST00000515710	GGT6	Q6P531	493 aa		28.51	■■■□□ 2.15
TRIO-223	ENST00000515710	EFCAB6	Q5THR3	1501 aa		28.49	■■■□□ 2.15
TRIO-223	ENST00000515710	SPHKAP	Q2M3C7	1700 aa		28.48	■■■□□ 2.15
TRIO-223	ENST00000515710	EIF4G2	P78344	907 aa	Known RBP eCLIP	28.46	■■■□□ 2.15
TRIO-223	ENST00000515710	DCAF11	Q8TEB1	546 aa		28.46	■■■□□ 2.15
TRIO-223	ENST00000515710	RERE	Q9P2R6	1566 aa		28.44	■■■□□ 2.14
TRIO-223	ENST00000515710	CEP152	O94986	1710 aa		28.44	■■■□□ 2.14
TRIO-223	ENST00000515710	WASHC2C	Q9Y4E1	1318 aa		28.43	■■■□□ 2.14
TRIO-223	ENST00000515710	COL17A1	Q9UMD9	1497 aa	Predicted RBP	28.42	■■■□□ 2.14
TRIO-223	ENST00000515710	HSPA5	P11021	654 aa	Known RBP	28.41	■■■□□ 2.14
TRIO-223	ENST00000515710	ABCC3	O15438	1527 aa		28.41	■■■□□ 2.14
TRIO-223	ENST00000515710	RGL3	Q3MIN7	710 aa		28.41	■■■□□ 2.14
TRIO-223	ENST00000515710	HIRIP3	Q9BW71	556 aa	Predicted RBP	28.41	■■■□□ 2.14
TRIO-223	ENST00000515710	KDM2A	Q9Y2K7	1162 aa		28.4	■■■□□ 2.14
TRIO-223	ENST00000515710	SPATA31E1	Q6ZUB1	1445 aa		28.39	■■■□□ 2.14
TRIO-223	ENST00000515710	ZNF326	Q5BKZ1	582 aa	Known RBP	28.39	■■■□□ 2.13
TRIO-223	ENST00000515710	AGL	P35573	1532 aa		28.37	■■■□□ 2.13
TRIO-223	ENST00000515710	RALGAPB	Q86X10	1494 aa		28.37	■■■□□ 2.13
TRIO-223	ENST00000515710	CLTCL1	P53675	1640 aa		28.37	■■■□□ 2.13
TRIO-223	ENST00000515710	ZC3H13	Q5T200	1668 aa	Known RBP	28.36	■■■□□ 2.13
TRIO-223	ENST00000515710	STAC3	Q96MF2	364 aa		28.35	■■■□□ 2.13
TRIO-223	ENST00000515710	NEURL4	Q96JN8	1562 aa		28.35	■■■□□ 2.13
TRIO-223	ENST00000515710	NPAT	Q14207	1427 aa		28.35	■■■□□ 2.13
TRIO-223	ENST00000515710	DNAJC5	Q9H3Z4	198 aa		28.33	■■■□□ 2.13
TRIO-223	ENST00000515710	PPP6R1	Q9UPN7	881 aa		28.33	■■■□□ 2.13
TRIO-223	ENST00000515710	ARHGAP31	Q2M1Z3	1444 aa		28.33	■■■□□ 2.13
TRIO-223	ENST00000515710	PRAG1	Q86YV5	1406 aa		28.33	■■■□□ 2.13
TRIO-223	ENST00000515710	CAMSAP1	Q5T5Y3	1602 aa		28.32	■■■□□ 2.12
TRIO-223	ENST00000515710	CNTLN	Q9NXG0	1405 aa		28.31	■■■□□ 2.12
TRIO-223	ENST00000515710	ARHGEF40	Q8TER5	1519 aa		28.31	■■■□□ 2.12
TRIO-223	ENST00000515710	MIER1	Q8N108	512 aa		28.28	■■■□□ 2.12
TRIO-223	ENST00000515710	DDX10	Q13206	875 aa	Known RBP	28.26	■■■□□ 2.11
TRIO-223	ENST00000515710	NOS1	P29475	1434 aa		28.25	■■■□□ 2.11
TRIO-223	ENST00000515710	CARD11	Q9BXL7	1154 aa		28.25	■■■□□ 2.11
TRIO-223	ENST00000515710	TRH	P20396	242 aa	Predicted RBP	28.24	■■■□□ 2.11
TRIO-223	ENST00000515710	TRPM1	Q7Z4N2	1603 aa		28.23	■■■□□ 2.11
TRIO-223	ENST00000515710	USP47	Q96K76	1375 aa		28.23	■■■□□ 2.11
TRIO-223	ENST00000515710	KIF1B	O60333	1816 aa		28.22	■■■□□ 2.11
TRIO-223	ENST00000515710	UGGT1	Q9NYU2	1555 aa		28.22	■■■□□ 2.11
TRIO-223	ENST00000515710	ROCK2	O75116	1388 aa	Known RBP	28.21	■■■□□ 2.11
TRIO-223	ENST00000515710	GPRASP1	Q5JY77	1395 aa		28.19	■■■□□ 2.1
TRIO-223	ENST00000515710	WASHC2A	Q641Q2	1341 aa		28.17	■■■□□ 2.1
TRIO-223	ENST00000515710	SIGLEC1	Q9BZZ2	1709 aa		28.16	■■■□□ 2.1
TRIO-223	ENST00000515710	LAMC1	P11047	1609 aa		28.15	■■■□□ 2.1
TRIO-223	ENST00000515710	ADGRB3	O60242	1522 aa		28.15	■■■□□ 2.1
TRIO-223	ENST00000515710	MADD	Q8WXG6	1647 aa		28.14	■■■□□ 2.09
TRIO-223	ENST00000515710	MYOM2	P54296	1465 aa		28.13	■■■□□ 2.09
TRIO-223	ENST00000515710	SLC52A1	Q9NWF4	448 aa		28.12	■■■□□ 2.09
TRIO-223	ENST00000515710	SYNM	O15061	1565 aa		28.12	■■■□□ 2.09
TRIO-223	ENST00000515710	CFAP65	Q6ZU64	1925 aa	Known RBP	28.12	■■■□□ 2.09
TRIO-223	ENST00000515710	PIK3C2B	O00750	1634 aa		28.12	■■■□□ 2.09
TRIO-223	ENST00000515710	CCDC7	Q96M83	1385 aa		28.12	■■■□□ 2.09
TRIO-223	ENST00000515710	NBPF1	Q3BBV0	1214 aa		28.12	■■■□□ 2.09
TRIO-223	ENST00000515710	RPGRIP1L	Q68CZ1	1315 aa		28.1	■■■□□ 2.09
TRIO-223	ENST00000515710	C11orf95	C9JLR9	678 aa	Predicted RBP	28.1	■■■□□ 2.09
TRIO-223	ENST00000515710	CHGA	P10645	457 aa	Known RBP	28.1	■■■□□ 2.09
TRIO-223	ENST00000515710	MROH2A	A6NES4	1674 aa		28.09	■■■□□ 2.09
TRIO-223	ENST00000515710	PREX1	Q8TCU6	1659 aa		28.09	■■■□□ 2.09
TRIO-223	ENST00000515710	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.08	■■■□□ 2.09
TRIO-223	ENST00000515710	POLR1A	O95602	1720 aa	Predicted RBP	28.07	■■■□□ 2.08
TRIO-223	ENST00000515710	MLEC	Q14165	292 aa		28.07	■■■□□ 2.08
TRIO-223	ENST00000515710	IFT172	Q9UG01	1749 aa		28.07	■■■□□ 2.08
TRIO-223	ENST00000515710	CLTC	Q00610	1675 aa	Known RBP	28.06	■■■□□ 2.08
TRIO-223	ENST00000515710	ST20-MTHFS	A0A0A6YYL1	179 aa		28.04	■■■□□ 2.08
TRIO-223	ENST00000515710	KIF7	Q2M1P5	1343 aa		28.04	■■■□□ 2.08
TRIO-223	ENST00000515710	ERVK-7	P63135	1459 aa		28.04	■■■□□ 2.08

Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms