RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 FBXO31Q5XUX0 539 aaPredicted RBP21.2■□□□□ 0.98
TCOF1-215ENST00000515516 PKD2Q13563 968 aa21.19■□□□□ 0.98
TCOF1-215ENST00000515516 RRP7BPQ9NSQ0 103 aa21.19■□□□□ 0.98
TCOF1-215ENST00000515516 TNRQ92752 1358 aa21.19■□□□□ 0.98
TCOF1-215ENST00000515516 FGD6Q6ZV73 1430 aa21.19■□□□□ 0.98
TCOF1-215ENST00000515516 NCKAP5LQ9HCH0 1330 aa21.18■□□□□ 0.98
TCOF1-215ENST00000515516 CAMSAP1Q5T5Y3 1602 aa21.18■□□□□ 0.98
TCOF1-215ENST00000515516 STRCQ7RTU9 1775 aa21.18■□□□□ 0.98
TCOF1-215ENST00000515516 ABCC5O15440 1437 aa21.17■□□□□ 0.98
TCOF1-215ENST00000515516 PTPN23Q9H3S7 1636 aa21.16■□□□□ 0.98
TCOF1-215ENST00000515516 PZPP20742 1482 aa21.16■□□□□ 0.98
TCOF1-215ENST00000515516 KIF15Q9NS87 1388 aa21.16■□□□□ 0.98
TCOF1-215ENST00000515516 DUOX2Q9NRD8 1548 aa21.14■□□□□ 0.98
TCOF1-215ENST00000515516 CHIC2Q9UKJ5 165 aa21.14■□□□□ 0.97
TCOF1-215ENST00000515516 MYO3AQ8NEV4 1616 aa21.14■□□□□ 0.97
TCOF1-215ENST00000515516 CEP170BQ9Y4F5 1589 aaPredicted RBP21.14■□□□□ 0.97
TCOF1-215ENST00000515516 A2ML1A8K2U0 1454 aa21.13■□□□□ 0.97
TCOF1-215ENST00000515516 SHANK2Q9UPX8 1470 aa21.13■□□□□ 0.97
TCOF1-215ENST00000515516 DAPK1P53355 1430 aa21.13■□□□□ 0.97
TCOF1-215ENST00000515516 FAM50AQ14320 339 aaKnown RBP21.13■□□□□ 0.97
TCOF1-215ENST00000515516 TCOF1Q13428 1488 aaKnown RBP21.13■□□□□ 0.97
TCOF1-215ENST00000515516 PLA2R1Q13018 1463 aa21.12■□□□□ 0.97
TCOF1-215ENST00000515516 ANKRD30AQ9BXX3 1397 aa21.11■□□□□ 0.97
TCOF1-215ENST00000515516 THEMISQ8N1K5 641 aaPredicted RBP21.1■□□□□ 0.97
TCOF1-215ENST00000515516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.1■□□□□ 0.973e-8■■■■□ 20.9
TCOF1-215ENST00000515516 EIF2AK4Q9P2K8 1649 aaKnown RBP21.09■□□□□ 0.97
TCOF1-215ENST00000515516 ERBINQ96RT1 1412 aa21.09■□□□□ 0.97
TCOF1-215ENST00000515516 ZNF142P52746 1687 aaPredicted RBP21.09■□□□□ 0.97
TCOF1-215ENST00000515516 RNF17Q9BXT8 1623 aaKnown RBP21.08■□□□□ 0.97
TCOF1-215ENST00000515516 ABCC3O15438 1527 aa21.08■□□□□ 0.96
TCOF1-215ENST00000515516 KANK1Q14678 1352 aa21.07■□□□□ 0.96
TCOF1-215ENST00000515516 NLRP1Q9C000 1473 aa21.07■□□□□ 0.96
TCOF1-215ENST00000515516 ANKLE2Q86XL3 938 aa21.06■□□□□ 0.96
TCOF1-215ENST00000515516 DNMT1P26358 1616 aaKnown RBP21.05■□□□□ 0.96
TCOF1-215ENST00000515516 ZC3H13Q5T200 1668 aaKnown RBP21.02■□□□□ 0.96
TCOF1-215ENST00000515516 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.02■□□□□ 0.96
TCOF1-215ENST00000515516 CROCC2H7BZ55 1655 aa21.02■□□□□ 0.95
TCOF1-215ENST00000515516 ZNF335Q9H4Z2 1342 aaPredicted RBP21.02■□□□□ 0.95
TCOF1-215ENST00000515516 UGGT1Q9NYU2 1555 aa21■□□□□ 0.95
TCOF1-215ENST00000515516 ERVK-7P63135 1459 aa21■□□□□ 0.95
TCOF1-215ENST00000515516 MROH1Q8NDA8 1641 aa20.99■□□□□ 0.95
TCOF1-215ENST00000515516 LTBP4Q8N2S1 1624 aa20.98■□□□□ 0.95
TCOF1-215ENST00000515516 SPATA31D1Q6ZQQ2 1576 aa20.97■□□□□ 0.95
TCOF1-215ENST00000515516 ARHGAP31Q2M1Z3 1444 aa20.96■□□□□ 0.95
TCOF1-215ENST00000515516 PRDM15P57071 1507 aaPredicted RBP20.96■□□□□ 0.95
TCOF1-215ENST00000515516 ADGRL2O95490 1459 aa20.95■□□□□ 0.94
TCOF1-215ENST00000515516 PPARGC1BQ86YN6 1023 aaKnown RBP20.95■□□□□ 0.94
TCOF1-215ENST00000515516 IQSEC2Q5JU85 1478 aa20.94■□□□□ 0.94
TCOF1-215ENST00000515516 STAG3Q9UJ98 1225 aa20.94■□□□□ 0.94
TCOF1-215ENST00000515516 ANKRD50Q9ULJ7 1429 aa20.92■□□□□ 0.94
TCOF1-215ENST00000515516 NPHP4O75161 1426 aaPredicted RBP20.91■□□□□ 0.94
TCOF1-215ENST00000515516 CEP152O94986 1710 aa20.91■□□□□ 0.94
TCOF1-215ENST00000515516 ITGAEP38570 1179 aa20.9■□□□□ 0.94
TCOF1-215ENST00000515516 UBAP1LF5GYI3 381 aa20.89■□□□□ 0.93
TCOF1-215ENST00000515516 EID1Q9Y6B2 187 aa20.89■□□□□ 0.93
TCOF1-215ENST00000515516 DEPDC5O75140 1603 aa20.88■□□□□ 0.93
TCOF1-215ENST00000515516 LMTK2Q8IWU2 1503 aa20.88■□□□□ 0.93
TCOF1-215ENST00000515516 TXNDC2Q86VQ3 553 aa20.87■□□□□ 0.93
TCOF1-215ENST00000515516 NEURL4Q96JN8 1562 aa20.87■□□□□ 0.93
TCOF1-215ENST00000515516 MED14O60244 1454 aa20.87■□□□□ 0.93
TCOF1-215ENST00000515516 ROCK1Q13464 1354 aa20.85■□□□□ 0.93
TCOF1-215ENST00000515516 POLR1AO95602 1720 aaPredicted RBP20.84■□□□□ 0.93
TCOF1-215ENST00000515516 IDI1Q13907 227 aa20.84■□□□□ 0.93
TCOF1-215ENST00000515516 SLC52A1Q9NWF4 448 aa20.83■□□□□ 0.93
TCOF1-215ENST00000515516 VWDEQ8N2E2 1590 aa20.83■□□□□ 0.92
TCOF1-215ENST00000515516 CPS1P31327 1500 aa20.83■□□□□ 0.92
TCOF1-215ENST00000515516 SCAF11Q99590 1463 aaKnown RBP20.81■□□□□ 0.92
TCOF1-215ENST00000515516 LTKP29376 864 aa20.81■□□□□ 0.92
TCOF1-215ENST00000515516 TOM1O60784 492 aa20.8■□□□□ 0.92
TCOF1-215ENST00000515516 TMEM2Q9UHN6 1383 aa20.79■□□□□ 0.92
TCOF1-215ENST00000515516 EFCAB6Q5THR3 1501 aa20.78■□□□□ 0.92
TCOF1-215ENST00000515516 CFAP65Q6ZU64 1925 aaKnown RBP20.78■□□□□ 0.92
TCOF1-215ENST00000515516 UBR1Q8IWV7 1749 aa20.78■□□□□ 0.92
TCOF1-215ENST00000515516 SLIT1O75093 1534 aa20.78■□□□□ 0.92
TCOF1-215ENST00000515516 NOS1P29475 1434 aa20.78■□□□□ 0.92
TCOF1-215ENST00000515516 SCAF1Q9H7N4 1312 aaKnown RBP20.78■□□□□ 0.92
TCOF1-215ENST00000515516 RPRD2Q5VT52 1461 aaKnown RBP20.77■□□□□ 0.92
TCOF1-215ENST00000515516 ARHGAP23Q9P227 1491 aa20.77■□□□□ 0.92
TCOF1-215ENST00000515516 IQGAP1P46940 1657 aa20.77■□□□□ 0.91
TCOF1-215ENST00000515516 NUP155O75694 1391 aa20.74■□□□□ 0.91
TCOF1-215ENST00000515516 HDGFP51858 240 aaKnown RBP20.74■□□□□ 0.91
TCOF1-215ENST00000515516 PIP4K2BP78356 416 aa20.74■□□□□ 0.91
TCOF1-215ENST00000515516 BCANQ96GW7 911 aa20.74■□□□□ 0.91
TCOF1-215ENST00000515516 PIK3C2BO00750 1634 aa20.74■□□□□ 0.91
TCOF1-215ENST00000515516 SYNMO15061 1565 aa20.72■□□□□ 0.91
TCOF1-215ENST00000515516 CHGAP10645 457 aaKnown RBP20.71■□□□□ 0.91
TCOF1-215ENST00000515516 UNC13BO14795 1591 aa20.69■□□□□ 0.9
TCOF1-215ENST00000515516 PPP1R15AO75807 674 aaPredicted RBP20.69■□□□□ 0.9
TCOF1-215ENST00000515516 RRBP1Q9P2E9 1410 aaKnown RBP20.69■□□□□ 0.9
TCOF1-215ENST00000515516 TET3O43151 1660 aa20.68■□□□□ 0.9
TCOF1-215ENST00000515516 DISP3Q9P2K9 1392 aa20.68■□□□□ 0.9
TCOF1-215ENST00000515516 ADGRB3O60242 1522 aa20.68■□□□□ 0.9
TCOF1-215ENST00000515516 SLC26A8Q96RN1 970 aa20.67■□□□□ 0.9
TCOF1-215ENST00000515516 KDM5AP29375 1690 aaKnown RBP20.67■□□□□ 0.9
TCOF1-215ENST00000515516 LRRC7Q96NW7 1537 aa20.65■□□□□ 0.9
TCOF1-215ENST00000515516 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.65■□□□□ 0.9
TCOF1-215ENST00000515516 KCNA6P17658 529 aa20.64■□□□□ 0.89
TCOF1-215ENST00000515516 HSPA1LP34931 641 aa20.62■□□□□ 0.89
TCOF1-215ENST00000515516 RIMS2Q9UQ26 1411 aa20.61■□□□□ 0.89
TCOF1-215ENST00000515516 GCC2Q8IWJ2 1684 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms