RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 SETD1BQ9UPS6 1966 aaKnown RBP17.71■□□□□ 0.43
VCAN-212ENST00000515397 MAST1Q9Y2H9 1570 aa17.71■□□□□ 0.43
VCAN-212ENST00000515397 PTPRKQ15262 1439 aa17.71■□□□□ 0.43
VCAN-212ENST00000515397 PREX1Q8TCU6 1659 aa17.69■□□□□ 0.42
VCAN-212ENST00000515397 ANKRD30AQ9BXX3 1397 aa17.66■□□□□ 0.42
VCAN-212ENST00000515397 NPATQ14207 1427 aa17.66■□□□□ 0.42
VCAN-212ENST00000515397 DNMT1P26358 1616 aaKnown RBP17.66■□□□□ 0.42
VCAN-212ENST00000515397 MROH2AA6NES4 1674 aa17.66■□□□□ 0.42
VCAN-212ENST00000515397 DUOX2Q9NRD8 1548 aa17.66■□□□□ 0.42
VCAN-212ENST00000515397 NCKAP5LQ9HCH0 1330 aa17.66■□□□□ 0.42
VCAN-212ENST00000515397 SHANK2Q9UPX8 1470 aa17.65■□□□□ 0.42
VCAN-212ENST00000515397 NCOA1Q15788 1441 aa17.64■□□□□ 0.42
VCAN-212ENST00000515397 KDM5DQ9BY66 1539 aa17.63■□□□□ 0.41
VCAN-212ENST00000515397 TNRQ92752 1358 aa17.63■□□□□ 0.41
VCAN-212ENST00000515397 CROCC2H7BZ55 1655 aa17.62■□□□□ 0.41
VCAN-212ENST00000515397 FBXO41Q8TF61 875 aa17.6■□□□□ 0.41
VCAN-212ENST00000515397 ABCC3O15438 1527 aa17.6■□□□□ 0.41
VCAN-212ENST00000515397 PZPP20742 1482 aa17.59■□□□□ 0.41
VCAN-212ENST00000515397 ERBINQ96RT1 1412 aa17.59■□□□□ 0.41
VCAN-212ENST00000515397 DMRT2Q9Y5R5 561 aa17.59■□□□□ 0.41
VCAN-212ENST00000515397 STRCQ7RTU9 1775 aa17.58■□□□□ 0.41
VCAN-212ENST00000515397 MROH1Q8NDA8 1641 aa17.58■□□□□ 0.41
VCAN-212ENST00000515397 RNF17Q9BXT8 1623 aaKnown RBP17.58■□□□□ 0.41
VCAN-212ENST00000515397 CAMSAP1Q5T5Y3 1602 aa17.57■□□□□ 0.4
VCAN-212ENST00000515397 EIF2AK4Q9P2K8 1649 aaKnown RBP17.56■□□□□ 0.4
VCAN-212ENST00000515397 CFAP65Q6ZU64 1925 aaKnown RBP17.56■□□□□ 0.4
VCAN-212ENST00000515397 ADGRL2O95490 1459 aa17.56■□□□□ 0.4
VCAN-212ENST00000515397 MYO3AQ8NEV4 1616 aa17.55■□□□□ 0.4
VCAN-212ENST00000515397 ANKRD50Q9ULJ7 1429 aa17.55■□□□□ 0.4
VCAN-212ENST00000515397 KANK1Q14678 1352 aa17.54■□□□□ 0.4
VCAN-212ENST00000515397 CEP170BQ9Y4F5 1589 aaPredicted RBP17.53■□□□□ 0.4
VCAN-212ENST00000515397 CEP152O94986 1710 aa17.53■□□□□ 0.4
VCAN-212ENST00000515397 A2ML1A8K2U0 1454 aa17.53■□□□□ 0.4
VCAN-212ENST00000515397 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.53■□□□□ 0.4
VCAN-212ENST00000515397 CERKQ8TCT0 537 aa17.52■□□□□ 0.4
VCAN-212ENST00000515397 THEMISQ8N1K5 641 aaPredicted RBP17.51■□□□□ 0.39
VCAN-212ENST00000515397 FAM135AQ9P2D6 1515 aa17.51■□□□□ 0.39
VCAN-212ENST00000515397 ERVK-7P63135 1459 aa17.5■□□□□ 0.39
VCAN-212ENST00000515397 PKD2Q13563 968 aa17.5■□□□□ 0.39
VCAN-212ENST00000515397 PTPRTO14522 1441 aa17.49■□□□□ 0.39
VCAN-212ENST00000515397 PRDM15P57071 1507 aaPredicted RBP17.49■□□□□ 0.39
VCAN-212ENST00000515397 ANKLE2Q86XL3 938 aa17.47■□□□□ 0.39
VCAN-212ENST00000515397 ROCK1Q13464 1354 aa17.47■□□□□ 0.39
VCAN-212ENST00000515397 ZNF335Q9H4Z2 1342 aaPredicted RBP17.47■□□□□ 0.39
VCAN-212ENST00000515397 ZNF142P52746 1687 aaPredicted RBP17.46■□□□□ 0.39
VCAN-212ENST00000515397 ZC3H13Q5T200 1668 aaKnown RBP17.46■□□□□ 0.39
VCAN-212ENST00000515397 IDI1Q13907 227 aa17.46■□□□□ 0.39
VCAN-212ENST00000515397 RRBP1Q9P2E9 1410 aaKnown RBP17.46■□□□□ 0.39
VCAN-212ENST00000515397 SPATA31D1Q6ZQQ2 1576 aa17.45■□□□□ 0.38
VCAN-212ENST00000515397 NLRP1Q9C000 1473 aa17.45■□□□□ 0.38
VCAN-212ENST00000515397 DEPDC5O75140 1603 aa17.45■□□□□ 0.38
VCAN-212ENST00000515397 ARHGAP31Q2M1Z3 1444 aa17.45■□□□□ 0.38
VCAN-212ENST00000515397 UGGT1Q9NYU2 1555 aa17.45■□□□□ 0.38
VCAN-212ENST00000515397 PLA2R1Q13018 1463 aa17.44■□□□□ 0.38
VCAN-212ENST00000515397 STAG3Q9UJ98 1225 aa17.44■□□□□ 0.38
VCAN-212ENST00000515397 SENP3Q9H4L4 574 aaPredicted RBP17.43■□□□□ 0.38
VCAN-212ENST00000515397 VWDEQ8N2E2 1590 aa17.43■□□□□ 0.38
VCAN-212ENST00000515397 NUP155O75694 1391 aa17.42■□□□□ 0.38
VCAN-212ENST00000515397 LTKP29376 864 aa17.41■□□□□ 0.38
VCAN-212ENST00000515397 LMTK2Q8IWU2 1503 aa17.41■□□□□ 0.38
VCAN-212ENST00000515397 TXNDC2Q86VQ3 553 aa17.39■□□□□ 0.37
VCAN-212ENST00000515397 CHGAP10645 457 aaKnown RBP17.37■□□□□ 0.37
VCAN-212ENST00000515397 EFCAB6Q5THR3 1501 aa17.37■□□□□ 0.37
VCAN-212ENST00000515397 TRIM52Q96A61 297 aa17.36■□□□□ 0.37
VCAN-212ENST00000515397 NPHP4O75161 1426 aaPredicted RBP17.36■□□□□ 0.37
VCAN-212ENST00000515397 NOS1P29475 1434 aa17.36■□□□□ 0.37
VCAN-212ENST00000515397 NEURL4Q96JN8 1562 aa17.36■□□□□ 0.37
VCAN-212ENST00000515397 LTBP4Q8N2S1 1624 aa17.36■□□□□ 0.37
VCAN-212ENST00000515397 NAIPQ13075 1403 aa17.35■□□□□ 0.37
VCAN-212ENST00000515397 SYNMO15061 1565 aa17.35■□□□□ 0.37
VCAN-212ENST00000515397 SLC52A1Q9NWF4 448 aa17.34■□□□□ 0.37
VCAN-212ENST00000515397 EID1Q9Y6B2 187 aa17.34■□□□□ 0.37
VCAN-212ENST00000515397 PIK3C2BO00750 1634 aa17.33■□□□□ 0.37
VCAN-212ENST00000515397 UBR1Q8IWV7 1749 aa17.33■□□□□ 0.36
VCAN-212ENST00000515397 UNC13BO14795 1591 aa17.32■□□□□ 0.36
VCAN-212ENST00000515397 NUTM2DQ5VT03 806 aaPredicted RBP17.32■□□□□ 0.36
VCAN-212ENST00000515397 TMEM2Q9UHN6 1383 aa17.31■□□□□ 0.36
VCAN-212ENST00000515397 BCANQ96GW7 911 aa17.3■□□□□ 0.36
VCAN-212ENST00000515397 MED14O60244 1454 aa17.3■□□□□ 0.36
VCAN-212ENST00000515397 POLR1AO95602 1720 aaPredicted RBP17.3■□□□□ 0.36
VCAN-212ENST00000515397 TET3O43151 1660 aa17.29■□□□□ 0.36
VCAN-212ENST00000515397 SLC26A8Q96RN1 970 aa17.29■□□□□ 0.36
VCAN-212ENST00000515397 SCAF11Q99590 1463 aaKnown RBP17.29■□□□□ 0.36
VCAN-212ENST00000515397 UBAP1LF5GYI3 381 aa17.28■□□□□ 0.36
VCAN-212ENST00000515397 RPRD2Q5VT52 1461 aaKnown RBP17.28■□□□□ 0.36
VCAN-212ENST00000515397 ARHGAP23Q9P227 1491 aa17.28■□□□□ 0.36
VCAN-212ENST00000515397 E9PCH4 1651 aa17.27■□□□□ 0.36
VCAN-212ENST00000515397 IQGAP3Q86VI3 1631 aa17.27■□□□□ 0.36
VCAN-212ENST00000515397 FOXD1Q16676 465 aa17.26■□□□□ 0.35
VCAN-212ENST00000515397 HFM1A2PYH4 1435 aa17.26■□□□□ 0.35
VCAN-212ENST00000515397 SLIT1O75093 1534 aa17.26■□□□□ 0.35
VCAN-212ENST00000515397 GCC2Q8IWJ2 1684 aa17.24■□□□□ 0.35
VCAN-212ENST00000515397 PPP1R15AO75807 674 aaPredicted RBP17.24■□□□□ 0.35
VCAN-212ENST00000515397 SLC4A1APQ9BWU0 796 aaKnown RBP17.24■□□□□ 0.35
VCAN-212ENST00000515397 IQGAP1P46940 1657 aa17.23■□□□□ 0.35
VCAN-212ENST00000515397 ADGRB3O60242 1522 aa17.22■□□□□ 0.35
VCAN-212ENST00000515397 RBM33Q96EV2 1170 aaKnown RBP17.22■□□□□ 0.35
VCAN-212ENST00000515397 RIMS2Q9UQ26 1411 aa17.21■□□□□ 0.35
VCAN-212ENST00000515397 PIP4K2BP78356 416 aa17.21■□□□□ 0.35
VCAN-212ENST00000515397 SCAF1Q9H7N4 1312 aaKnown RBP17.21■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms