RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 NLRP13Q86W25 1043 aa16.65■□□□□ 0.26
TCOF1-213ENST00000514442 MRC2Q9UBG0 1479 aa16.65■□□□□ 0.26
TCOF1-213ENST00000514442 KIF15Q9NS87 1388 aa16.65■□□□□ 0.26
TCOF1-213ENST00000514442 TPRNQ4KMQ1 711 aa16.64■□□□□ 0.25
TCOF1-213ENST00000514442 DNTTIP2Q5QJE6 756 aaKnown RBP16.64■□□□□ 0.25
TCOF1-213ENST00000514442 SLKQ9H2G2 1235 aaPredicted RBP16.64■□□□□ 0.25
TCOF1-213ENST00000514442 GZF1Q9H116 711 aaPredicted RBP16.64■□□□□ 0.25
TCOF1-213ENST00000514442 TERF2IPQ9NYB0 399 aa16.64■□□□□ 0.25
TCOF1-213ENST00000514442 PRXQ9BXM0 1461 aa16.63■□□□□ 0.25
TCOF1-213ENST00000514442 EID1Q9Y6B2 187 aa16.63■□□□□ 0.25
TCOF1-213ENST00000514442 PTMAP06454 111 aaKnown RBP16.63■□□□□ 0.25
TCOF1-213ENST00000514442 BICRAQ9NZM4 1560 aa16.63■□□□□ 0.25
TCOF1-213ENST00000514442 CDK11BP21127 795 aaKnown RBP16.63■□□□□ 0.25
TCOF1-213ENST00000514442 DNAJC5BQ9UF47 199 aa16.62■□□□□ 0.25
TCOF1-213ENST00000514442 CHMP4BQ9H444 224 aaKnown RBP16.61■□□□□ 0.25
TCOF1-213ENST00000514442 PRKRIP1Q9H875 184 aaPredicted RBP16.61■□□□□ 0.25
TCOF1-213ENST00000514442 FYCO1Q9BQS8 1478 aa16.61■□□□□ 0.25
TCOF1-213ENST00000514442 APBB1O00213 710 aa16.6■□□□□ 0.25
TCOF1-213ENST00000514442 PODXL2Q9NZ53 605 aa16.6■□□□□ 0.25
TCOF1-213ENST00000514442 PRG4Q92954 1404 aaPredicted RBP16.6■□□□□ 0.25
TCOF1-213ENST00000514442 NGDNQ8NEJ9 315 aaKnown RBP16.59■□□□□ 0.25
TCOF1-213ENST00000514442 EXOC6Q8TAG9 804 aa16.59■□□□□ 0.25
TCOF1-213ENST00000514442 RRP7AQ9Y3A4 280 aaKnown RBP16.59■□□□□ 0.25
TCOF1-213ENST00000514442 UACAQ9BZF9 1416 aa16.58■□□□□ 0.25
TCOF1-213ENST00000514442 FAM69CQ0P6D2 419 aa16.58■□□□□ 0.25
TCOF1-213ENST00000514442 RRP1P56182 461 aaKnown RBP16.58■□□□□ 0.24
TCOF1-213ENST00000514442 MYBBP1AQ9BQG0 1328 aaKnown RBP16.58■□□□□ 0.24
TCOF1-213ENST00000514442 ANKRD50Q9ULJ7 1429 aa16.57■□□□□ 0.24
TCOF1-213ENST00000514442 CSB-PGBD3P0DP91 1061 aa16.57■□□□□ 0.24
TCOF1-213ENST00000514442 HSCBQ8IWL3 235 aa16.57■□□□□ 0.24
TCOF1-213ENST00000514442 SPRYD3Q8NCJ5 442 aa16.57■□□□□ 0.24
TCOF1-213ENST00000514442 ITPRIPQ8IWB1 547 aa16.57■□□□□ 0.24
TCOF1-213ENST00000514442 MINK1Q8N4C8 1332 aaPredicted RBP16.57■□□□□ 0.24
TCOF1-213ENST00000514442 GOLGA2Q08379 1002 aa16.57■□□□□ 0.24
TCOF1-213ENST00000514442 AFAP1Q8N556 730 aa16.57■□□□□ 0.24
TCOF1-213ENST00000514442 FAM161AQ3B820 660 aa16.56■□□□□ 0.24
TCOF1-213ENST00000514442 IFT140Q96RY7 1462 aa16.56■□□□□ 0.24
TCOF1-213ENST00000514442 VGFO15240 615 aaPredicted RBP16.56■□□□□ 0.24
TCOF1-213ENST00000514442 SNAPC4Q5SXM2 1469 aa16.56■□□□□ 0.24
TCOF1-213ENST00000514442 TAOK2Q9UL54 1235 aa16.55■□□□□ 0.24
TCOF1-213ENST00000514442 CLUAP1Q96AJ1 413 aa16.55■□□□□ 0.24
TCOF1-213ENST00000514442 NPHP1O15259 732 aa16.55■□□□□ 0.24
TCOF1-213ENST00000514442 LTV1Q96GA3 475 aaPredicted RBP16.55■□□□□ 0.24
TCOF1-213ENST00000514442 HSP90AB1P08238 724 aaKnown RBP16.54■□□□□ 0.24
TCOF1-213ENST00000514442 PTMSP20962 102 aa16.54■□□□□ 0.24
TCOF1-213ENST00000514442 PDE3BQ13370 1112 aa16.54■□□□□ 0.24
TCOF1-213ENST00000514442 ARHGAP5Q13017 1502 aa16.54■□□□□ 0.24
TCOF1-213ENST00000514442 IPO8O15397 1037 aaKnown RBP16.53■□□□□ 0.24
TCOF1-213ENST00000514442 DNMBPQ6XZF7 1577 aa16.53■□□□□ 0.24
TCOF1-213ENST00000514442 SMC4Q9NTJ3 1288 aa16.52■□□□□ 0.24
TCOF1-213ENST00000514442 RRBP1Q9P2E9 1410 aaKnown RBP16.52■□□□□ 0.24
TCOF1-213ENST00000514442 SYNJ2O15056 1496 aa16.51■□□□□ 0.23
TCOF1-213ENST00000514442 ARID3AQ99856 593 aa16.51■□□□□ 0.23
TCOF1-213ENST00000514442 CALD1Q05682 793 aaKnown RBP16.5■□□□□ 0.23
TCOF1-213ENST00000514442 AMPHP49418 695 aa16.5■□□□□ 0.23
TCOF1-213ENST00000514442 EFCAB5A4FU69 1503 aa16.5■□□□□ 0.23
TCOF1-213ENST00000514442 GBP4Q96PP9 640 aa16.5■□□□□ 0.23
TCOF1-213ENST00000514442 ZNF330Q9Y3S2 320 aaPredicted RBP16.5■□□□□ 0.23
TCOF1-213ENST00000514442 EVC2Q86UK5 1308 aa16.5■□□□□ 0.23
TCOF1-213ENST00000514442 CENPQQ7L2Z9 268 aaPredicted RBP16.49■□□□□ 0.23
TCOF1-213ENST00000514442 KCNJ4P48050 445 aa16.49■□□□□ 0.23
TCOF1-213ENST00000514442 RRP9O43818 475 aaKnown RBP16.49■□□□□ 0.23
TCOF1-213ENST00000514442 KIF7Q2M1P5 1343 aa16.49■□□□□ 0.23
TCOF1-213ENST00000514442 CENPJQ9HC77 1338 aaPredicted RBP16.47■□□□□ 0.23
TCOF1-213ENST00000514442 CNTLNQ9NXG0 1405 aa16.46■□□□□ 0.23
TCOF1-213ENST00000514442 CGNL1Q0VF96 1302 aa16.46■□□□□ 0.23
TCOF1-213ENST00000514442 PLIN1O60240 522 aa16.46■□□□□ 0.23
TCOF1-213ENST00000514442 BCL2L13Q9BXK5 485 aa16.46■□□□□ 0.23
TCOF1-213ENST00000514442 CCDC7Q96M83 1385 aa16.45■□□□□ 0.22
TCOF1-213ENST00000514442 TIAM1Q13009 1591 aa16.45■□□□□ 0.22
TCOF1-213ENST00000514442 BACH2Q9BYV9 841 aa16.45■□□□□ 0.22
TCOF1-213ENST00000514442 EHBP1L1Q8N3D4 1523 aa16.45■□□□□ 0.22
TCOF1-213ENST00000514442 RWDD1Q9H446 243 aaPredicted RBP16.45■□□□□ 0.22
TCOF1-213ENST00000514442 FGD1P98174 961 aa16.45■□□□□ 0.22
TCOF1-213ENST00000514442 TMEM132EQ6IEE7 984 aa16.44■□□□□ 0.22
TCOF1-213ENST00000514442 NAP1L2Q9ULW6 460 aaPredicted RBP16.44■□□□□ 0.22
TCOF1-213ENST00000514442 DDX11L8A8MPP1 907 aa16.44■□□□□ 0.22
TCOF1-213ENST00000514442 ELL2O00472 640 aaPredicted RBP16.44■□□□□ 0.22
TCOF1-213ENST00000514442 FRAT2O75474 233 aaPredicted RBP16.44■□□□□ 0.22
TCOF1-213ENST00000514442 A0A0U1RQG5 324 aaPredicted RBP16.43■□□□□ 0.22
TCOF1-213ENST00000514442 SLC4A10Q6U841 1118 aa16.43■□□□□ 0.22
TCOF1-213ENST00000514442 STK31Q9BXU1 1019 aa16.43■□□□□ 0.22
TCOF1-213ENST00000514442 CDK13Q14004 1512 aaKnown RBP16.43■□□□□ 0.22
TCOF1-213ENST00000514442 TPM2P07951 284 aa16.42■□□□□ 0.22
TCOF1-213ENST00000514442 COG3Q96JB2 828 aa16.42■□□□□ 0.22
TCOF1-213ENST00000514442 CRBNQ96SW2 442 aa16.42■□□□□ 0.22
TCOF1-213ENST00000514442 APAF1O14727 1248 aa16.42■□□□□ 0.22
TCOF1-213ENST00000514442 ABCA10Q8WWZ4 1543 aa16.41■□□□□ 0.22
TCOF1-213ENST00000514442 WASHC2AQ641Q2 1341 aa16.41■□□□□ 0.22
TCOF1-213ENST00000514442 TROQ12816 1431 aaPredicted RBP16.41■□□□□ 0.22
TCOF1-213ENST00000514442 C9orf84Q5VXU9 1444 aa16.41■□□□□ 0.22
TCOF1-213ENST00000514442 CHAF1AQ13111 956 aaPredicted RBP16.4■□□□□ 0.22
TCOF1-213ENST00000514442 AKNAQ7Z591 1439 aa16.4■□□□□ 0.22
TCOF1-213ENST00000514442 HECW1Q76N89 1606 aa16.4■□□□□ 0.22
TCOF1-213ENST00000514442 C11orf95C9JLR9 678 aaPredicted RBP16.4■□□□□ 0.22
TCOF1-213ENST00000514442 SMG6Q86US8 1419 aaKnown RBP16.39■□□□□ 0.22
TCOF1-213ENST00000514442 WDR97A6NE52 1622 aa16.39■□□□□ 0.21
TCOF1-213ENST00000514442 CFAP70Q5T0N1 1121 aa16.38■□□□□ 0.21
TCOF1-213ENST00000514442 AMER1Q5JTC6 1135 aaPredicted RBP16.38■□□□□ 0.21
TCOF1-213ENST00000514442 ZMYND15Q9H091 742 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms