RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.83□□□□□ -0.35
PDLIM3-209ENST00000514142 A0A0U1RQG5 324 aaPredicted RBP12.83□□□□□ -0.36
PDLIM3-209ENST00000514142 MYBBP1AQ9BQG0 1328 aaKnown RBP12.83□□□□□ -0.36
PDLIM3-209ENST00000514142 NPHP1O15259 732 aa12.83□□□□□ -0.36
PDLIM3-209ENST00000514142 PKNOX2Q96KN3 472 aa12.83□□□□□ -0.36
PDLIM3-209ENST00000514142 CHMP5Q9NZZ3 219 aa12.83□□□□□ -0.36
PDLIM3-209ENST00000514142 KIF16BQ96L93 1317 aa12.83□□□□□ -0.36
PDLIM3-209ENST00000514142 ANKRD45Q5TZF3 282 aa12.82□□□□□ -0.36
PDLIM3-209ENST00000514142 ISY1Q9ULR0 285 aaKnown RBP12.82□□□□□ -0.36
PDLIM3-209ENST00000514142 HDGFL2Q7Z4V5 671 aaPredicted RBP12.81□□□□□ -0.36
PDLIM3-209ENST00000514142 TPM3P06753 285 aa12.81□□□□□ -0.36
PDLIM3-209ENST00000514142 NCBP3Q53F19 620 aaKnown RBP12.81□□□□□ -0.36
PDLIM3-209ENST00000514142 CARMIL1Q5VZK9 1371 aa12.81□□□□□ -0.36
PDLIM3-209ENST00000514142 GOLGA6L19H0YKK7 550 aa12.81□□□□□ -0.36
PDLIM3-209ENST00000514142 STK31Q9BXU1 1019 aa12.81□□□□□ -0.36
PDLIM3-209ENST00000514142 BAZ1AQ9NRL2 1556 aaPredicted RBP12.81□□□□□ -0.36
PDLIM3-209ENST00000514142 KIF15Q9NS87 1388 aa12.8□□□□□ -0.36
PDLIM3-209ENST00000514142 R3HCC1Q9Y3T6 440 aaKnown RBP12.8□□□□□ -0.36
PDLIM3-209ENST00000514142 NUP155O75694 1391 aa12.8□□□□□ -0.36
PDLIM3-209ENST00000514142 BECN2A8MW95 431 aa12.8□□□□□ -0.36
PDLIM3-209ENST00000514142 SF3A1Q15459 793 aaKnown RBP12.8□□□□□ -0.36
PDLIM3-209ENST00000514142 PDE4CQ08493 712 aa12.8□□□□□ -0.36
PDLIM3-209ENST00000514142 SETQ01105 290 aaPredicted RBP12.79□□□□□ -0.36
PDLIM3-209ENST00000514142 CCDC34Q96HJ3 373 aa12.79□□□□□ -0.36
PDLIM3-209ENST00000514142 FMN1Q68DA7 1419 aa12.79□□□□□ -0.36
PDLIM3-209ENST00000514142 ERCC6Q03468 1493 aa12.79□□□□□ -0.36
PDLIM3-209ENST00000514142 PHLDB1Q86UU1 1377 aa12.78□□□□□ -0.36
PDLIM3-209ENST00000514142 MROH2BQ7Z745 1585 aa12.78□□□□□ -0.36
PDLIM3-209ENST00000514142 CGNL1Q0VF96 1302 aa12.78□□□□□ -0.36
PDLIM3-209ENST00000514142 RILPL2Q969X0 211 aa12.78□□□□□ -0.36
PDLIM3-209ENST00000514142 ST20-MTHFSA0A0A6YYL1 179 aa12.78□□□□□ -0.36
PDLIM3-209ENST00000514142 GPATCH3Q96I76 525 aa12.78□□□□□ -0.36
PDLIM3-209ENST00000514142 KANK1Q14678 1352 aa12.78□□□□□ -0.36
PDLIM3-209ENST00000514142 PAK3O75914 559 aaPredicted RBP12.77□□□□□ -0.36
PDLIM3-209ENST00000514142 PRKCSHP14314 528 aaPredicted RBP12.77□□□□□ -0.36
PDLIM3-209ENST00000514142 ELL2O00472 640 aaPredicted RBP12.77□□□□□ -0.37
PDLIM3-209ENST00000514142 ATP6V1DQ9Y5K8 247 aa12.77□□□□□ -0.37
PDLIM3-209ENST00000514142 PANK3Q9H999 370 aa12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 ZKSCAN2Q63HK3 967 aa12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 CHMP3Q9Y3E7 222 aa12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 MRE11P49959 708 aa12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 TRHP20396 242 aaPredicted RBP12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 GPS2Q13227 327 aa12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 H3BQV1 296 aa12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 IFFO2Q5TF58 517 aa12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 RASSF8Q8NHQ8 419 aa12.76□□□□□ -0.37
PDLIM3-209ENST00000514142 BCL11BQ9C0K0 894 aaPredicted RBP12.75□□□□□ -0.37
PDLIM3-209ENST00000514142 E9PSI1 815 aa12.75□□□□□ -0.37
PDLIM3-209ENST00000514142 FRAT2O75474 233 aaPredicted RBP12.75□□□□□ -0.37
PDLIM3-209ENST00000514142 GORABQ5T7V8 394 aa12.75□□□□□ -0.37
PDLIM3-209ENST00000514142 MCTP1Q6DN14 999 aa12.74□□□□□ -0.37
PDLIM3-209ENST00000514142 PES1O00541 588 aaKnown RBP12.74□□□□□ -0.37
PDLIM3-209ENST00000514142 CCDC88BA6NC98 1476 aa12.74□□□□□ -0.37
PDLIM3-209ENST00000514142 CUX2O14529 1486 aa12.74□□□□□ -0.37
PDLIM3-209ENST00000514142 TEX35Q5T0J7 233 aa12.74□□□□□ -0.37
PDLIM3-209ENST00000514142 APAF1O14727 1248 aa12.73□□□□□ -0.37
PDLIM3-209ENST00000514142 ZNF330Q9Y3S2 320 aaPredicted RBP12.73□□□□□ -0.37
PDLIM3-209ENST00000514142 SPAG9O60271 1321 aaKnown RBP12.73□□□□□ -0.37
PDLIM3-209ENST00000514142 NASPP49321 788 aaPredicted RBP12.73□□□□□ -0.37
PDLIM3-209ENST00000514142 MLECQ14165 292 aa12.73□□□□□ -0.37
PDLIM3-209ENST00000514142 KIF3AQ9Y496 699 aa12.73□□□□□ -0.37
PDLIM3-209ENST00000514142 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 RBM10P98175 930 aaKnown RBP12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 HOMER1Q86YM7 354 aa12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 FAM184AQ8NB25 1140 aa12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 EIF4G1Q04637 1599 aaKnown RBP12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 ABCC8Q09428 1581 aa12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 PATL2C9JE40 543 aaKnown RBP12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 GGT6Q6P531 493 aa12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 C22orf23Q9BZE7 217 aa12.72□□□□□ -0.37
PDLIM3-209ENST00000514142 MAP7D2Q96T17 732 aa12.71□□□□□ -0.37
PDLIM3-209ENST00000514142 TRAK2O60296 914 aa12.71□□□□□ -0.38
PDLIM3-209ENST00000514142 RNF214Q8ND24 703 aa12.71□□□□□ -0.38
PDLIM3-209ENST00000514142 IFT57Q9NWB7 429 aa12.71□□□□□ -0.38
PDLIM3-209ENST00000514142 TPD52L1Q16890 204 aaPredicted RBP12.7□□□□□ -0.38
PDLIM3-209ENST00000514142 REC8O95072 547 aa12.69□□□□□ -0.38
PDLIM3-209ENST00000514142 EIF3AQ14152 1382 aaKnown RBP12.69□□□□□ -0.38
PDLIM3-209ENST00000514142 TPM2P07951 284 aa12.69□□□□□ -0.38
PDLIM3-209ENST00000514142 NUCB2P80303 420 aa12.69□□□□□ -0.38
PDLIM3-209ENST00000514142 TOMM22Q9NS69 142 aa12.69□□□□□ -0.38
PDLIM3-209ENST00000514142 MTERF4Q7Z6M4 381 aaKnown RBP12.69□□□□□ -0.38
PDLIM3-209ENST00000514142 TSR1Q2NL82 804 aaKnown RBP12.68□□□□□ -0.38
PDLIM3-209ENST00000514142 ANKRD30AQ9BXX3 1397 aa12.68□□□□□ -0.38
PDLIM3-209ENST00000514142 LMOD3Q0VAK6 560 aa12.68□□□□□ -0.38
PDLIM3-209ENST00000514142 BICD2Q8TD16 824 aa12.68□□□□□ -0.38
PDLIM3-209ENST00000514142 TERF2IPQ9NYB0 399 aa12.68□□□□□ -0.38
PDLIM3-209ENST00000514142 HDAC5Q9UQL6 1122 aa12.68□□□□□ -0.38
PDLIM3-209ENST00000514142 DDX19BQ9UMR2 479 aa12.67□□□□□ -0.38
PDLIM3-209ENST00000514142 DIAPH3Q9NSV4 1193 aa12.67□□□□□ -0.38
PDLIM3-209ENST00000514142 CCDC39Q9UFE4 941 aa12.67□□□□□ -0.38
PDLIM3-209ENST00000514142 DZIP1LQ8IYY4 767 aaKnown RBP12.67□□□□□ -0.38
PDLIM3-209ENST00000514142 LNPKQ9C0E8 428 aa12.67□□□□□ -0.38
PDLIM3-209ENST00000514142 FBXW7Q969H0 707 aa12.66□□□□□ -0.38
PDLIM3-209ENST00000514142 CCDC9Q9Y3X0 531 aaKnown RBP12.66□□□□□ -0.38
PDLIM3-209ENST00000514142 VPS37CA5D8V6 355 aaPredicted RBP12.66□□□□□ -0.38
PDLIM3-209ENST00000514142 TPM1P09493 284 aa12.66□□□□□ -0.38
PDLIM3-209ENST00000514142 TAF7LQ5H9L4 462 aa12.66□□□□□ -0.38
PDLIM3-209ENST00000514142 CHMP4AQ9BY43 222 aa12.66□□□□□ -0.38
PDLIM3-209ENST00000514142 CCDC70Q6NSX1 233 aa12.65□□□□□ -0.38
PDLIM3-209ENST00000514142 ANO2Q9NQ90 1003 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms